View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2585_low_25 (Length: 396)

Name: NF2585_low_25
Description: NF2585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2585_low_25
NF2585_low_25
[»] chr3 (10 HSPs)
chr3 (259-331)||(36234079-36234151)
chr3 (61-121)||(29360925-29360985)
chr3 (61-121)||(3090741-3090802)
chr3 (60-120)||(12139697-12139757)
chr3 (207-255)||(12139563-12139611)
chr3 (204-255)||(3090608-3090659)
chr3 (206-255)||(48443668-48443717)
chr3 (146-175)||(3090687-3090716)
chr3 (146-175)||(29361010-29361039)
chr3 (195-256)||(29361059-29361120)
[»] chr6 (5 HSPs)
chr6 (59-121)||(5358839-5358901)
chr6 (195-256)||(5358704-5358765)
chr6 (61-121)||(8251307-8251365)
chr6 (74-120)||(2800011-2800057)
chr6 (198-254)||(8251174-8251230)
[»] chr4 (2 HSPs)
chr4 (61-121)||(9597878-9597938)
chr4 (206-255)||(9598024-9598073)
[»] chr8 (5 HSPs)
chr8 (59-119)||(20521498-20521558)
chr8 (8-60)||(22632239-22632291)
chr8 (206-254)||(6181418-6181466)
chr8 (59-120)||(5729923-5729984)
chr8 (290-340)||(22633021-22633072)
[»] chr1 (5 HSPs)
chr1 (205-255)||(46668805-46668855)
chr1 (197-255)||(52111350-52111408)
chr1 (60-121)||(52111484-52111545)
chr1 (77-121)||(25724283-25724327)
chr1 (59-119)||(51051472-51051532)
[»] scaffold0504 (2 HSPs)
scaffold0504 (61-120)||(6808-6867)
scaffold0504 (146-174)||(6893-6921)
[»] chr7 (2 HSPs)
chr7 (59-121)||(33222532-33222592)
chr7 (73-121)||(35034872-35034920)
[»] chr5 (4 HSPs)
chr5 (206-254)||(10243074-10243122)
chr5 (206-255)||(36438090-36438139)
chr5 (66-121)||(31386134-31386189)
chr5 (61-120)||(36437947-36438006)
[»] chr2 (2 HSPs)
chr2 (206-256)||(14724379-14724429)
chr2 (146-174)||(45444104-45444132)
[»] scaffold0154 (1 HSPs)
scaffold0154 (61-115)||(10921-10975)


Alignment Details
Target: chr3 (Bit Score: 65; Significance: 2e-28; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 259 - 331
Target Start/End: Original strand, 36234079 - 36234151
Alignment:
Q  259 tttgtaaattaaaattaggttttgcattagggaaagagggaggtgtactagaagtttctaaaatgattaaaaa 331  Q
    ||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  36234079 tttgtaaattaaaatgaggttttgcattagtgaaagagggaggtgtactagaagtttctaaaatgattaaaaa 36234151  T

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Target: chr3; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 61 - 121
Target Start/End: Original strand, 29360925 - 29360985
Alignment:
Q  61 gagaaagtcttgtataggcacaagcatttagacacaaaatttaggcgcacacacataaatc 121  Q
    ||||||||||| |||||||||||||||||||||||||||| ||||| ||||||||||||||    
T  29360925 gagaaagtcttatataggcacaagcatttagacacaaaatgtaggcacacacacataaatc 29360985  T

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Target: chr3; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 61 - 121
Target Start/End: Complemental strand, 3090802 - 3090741
Alignment:
Q  61 gagaaagtcttgtataggcacaagcatttagacacaaaatttag--gcgcacacacataaatc 121  Q
    ||||||||||||||||| ||||||||||||||||||||||||||  |||||||||||||||||    
T  3090802 gagaaagtcttgtatag-cacaagcatttagacacaaaatttaggcgcgcacacacataaatc 3090741  T

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Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 60 - 120
Target Start/End: Complemental strand, 12139757 - 12139697
Alignment:
Q  60 agagaaagtcttgtataggcacaagcatttagacacaaaatttaggcgcacacacataaat 120  Q
    |||||||||||||| ||||||||| |||| ||||||||| ||||||| |||||||||||||    
T  12139757 agagaaagtcttgtgtaggcacaatcattaagacacaaattttaggcacacacacataaat 12139697  T

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Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 207 - 255
Target Start/End: Complemental strand, 12139611 - 12139563
Alignment:
Q  207 gtgtgcctaaatgtgtggtgttggtcttgtgaccaagtaagagtttctc 255  Q
    |||||||||||||||  ||||||||| ||||||||||||||||||||||    
T  12139611 gtgtgcctaaatgtgatgtgttggtcatgtgaccaagtaagagtttctc 12139563  T

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Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 204 - 255
Target Start/End: Complemental strand, 3090659 - 3090608
Alignment:
Q  204 tatgtgtgcctaaatgtgtggtgttggtcttgtgaccaagtaagagtttctc 255  Q
    |||||||| |||||| || ||||||||||||||||||| |||||||||||||    
T  3090659 tatgtgtgtctaaatatgaggtgttggtcttgtgaccatgtaagagtttctc 3090608  T

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Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 206 - 255
Target Start/End: Original strand, 48443668 - 48443717
Alignment:
Q  206 tgtgtgcctaaatgtgtggtgttggtcttgtgaccaagtaagagtttctc 255  Q
    |||||| ||||||||| ||||||||||||||||| ||| |||||||||||    
T  48443668 tgtgtgtctaaatgtgaggtgttggtcttgtgactaagcaagagtttctc 48443717  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 146 - 175
Target Start/End: Complemental strand, 3090716 - 3090687
Alignment:
Q  146 tagtcacatcaatcaatatcactttaatca 175  Q
    ||||||||||||||||||||||||||||||    
T  3090716 tagtcacatcaatcaatatcactttaatca 3090687  T

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Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 146 - 175
Target Start/End: Original strand, 29361010 - 29361039
Alignment:
Q  146 tagtcacatcaatcaatatcactttaatca 175  Q
    ||||||||||||||||||||||||||||||    
T  29361010 tagtcacatcaatcaatatcactttaatca 29361039  T

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Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 256
Target Start/End: Original strand, 29361059 - 29361120
Alignment:
Q  195 agcttcttgtatgtgtgcctaaatgtgtggtgttggtcttgtgaccaagtaagagtttctct 256  Q
    |||||||||| | |||| |||||| || | || || ||||||||||||||||||||||||||    
T  29361059 agcttcttgtgtatgtgtctaaatatgagatgatgatcttgtgaccaagtaagagtttctct 29361120  T

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Target: chr6 (Bit Score: 55; Significance: 2e-22; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 59 - 121
Target Start/End: Complemental strand, 5358901 - 5358839
Alignment:
Q  59 tagagaaagtcttgtataggcacaagcatttagacacaaaatttaggcgcacacacataaatc 121  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||    
T  5358901 tagagaaagtcttgtataagcacaagcatttagacacaaaatttaggcacacacacataaatc 5358839  T

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Target: chr6; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 195 - 256
Target Start/End: Complemental strand, 5358765 - 5358704
Alignment:
Q  195 agcttcttgtatgtgtgcctaaatgtgtggtgttggtcttgtgaccaagtaagagtttctct 256  Q
    ||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  5358765 agcttattgtatgtgtgcctaaatgtgaggtgttggtcttgtgaccaagtaagagtttctct 5358704  T

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Target: chr6; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 61 - 121
Target Start/End: Complemental strand, 8251365 - 8251307
Alignment:
Q  61 gagaaagtcttgtataggcacaagcatttagacacaaaatttaggcgcacacacataaatc 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||    
T  8251365 gagaaagtcttgtataggcacaagcatttagacacaaaatttag--gcacacacataaatc 8251307  T

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Target: chr6; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 74 - 120
Target Start/End: Original strand, 2800011 - 2800057
Alignment:
Q  74 ataggcacaagcatttagacacaaaatttaggcgcacacacataaat 120  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  2800011 ataggcacaagcatttagacacaaaatttaggcgcacacacataaat 2800057  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 198 - 254
Target Start/End: Complemental strand, 8251230 - 8251174
Alignment:
Q  198 ttcttgtatgtgtgcctaaatgtgtggtgttggtcttgtgaccaagtaagagtttct 254  Q
    ||||||| ||| || |||||| |  |||||||||||||||||||||||| |||||||    
T  8251230 ttcttgtgtgtatgtctaaatataaggtgttggtcttgtgaccaagtaaaagtttct 8251174  T

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Target: chr4 (Bit Score: 49; Significance: 6e-19; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 61 - 121
Target Start/End: Original strand, 9597878 - 9597938
Alignment:
Q  61 gagaaagtcttgtataggcacaagcatttagacacaaaatttaggcgcacacacataaatc 121  Q
    ||||||||||||||||||||||||||| ||| |||||||||||||| ||||||||||||||    
T  9597878 gagaaagtcttgtataggcacaagcatataggcacaaaatttaggcacacacacataaatc 9597938  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 206 - 255
Target Start/End: Original strand, 9598024 - 9598073
Alignment:
Q  206 tgtgtgcctaaatgtgtggtgttggtcttgtgaccaagtaagagtttctc 255  Q
    |||||||||||||||| ||||||||||||||||| ||| |||||||||||    
T  9598024 tgtgtgcctaaatgtgaggtgttggtcttgtgactaagcaagagtttctc 9598073  T

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Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 59 - 119
Target Start/End: Original strand, 20521498 - 20521558
Alignment:
Q  59 tagagaaagtcttgtataggcacaagcatttagacacaaaatttaggcgcacacacataaa 119  Q
    ||||||||||||||  ||||||||||||||| ||||||||||||||||| |||||||||||    
T  20521498 tagagaaagtcttgcgtaggcacaagcatttggacacaaaatttaggcgtacacacataaa 20521558  T

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Target: chr8; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 8 - 60
Target Start/End: Original strand, 22632239 - 22632291
Alignment:
Q  8 gtcgaagaatataacagggaaaataaatgacttaacgctgaattttgtttgta 60  Q
    ||||||||| ||||||||||||||||||||||||| |||||||||||||||||    
T  22632239 gtcgaagaaaataacagggaaaataaatgacttaaagctgaattttgtttgta 22632291  T

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Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 206 - 254
Target Start/End: Original strand, 6181418 - 6181466
Alignment:
Q  206 tgtgtgcctaaatgtgtggtgttggtcttgtgaccaagtaagagtttct 254  Q
    |||||||||||||||| ||||||||||||||||| ||||||||||||||    
T  6181418 tgtgtgcctaaatgtgaggtgttggtcttgtgactaagtaagagtttct 6181466  T

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Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 59 - 120
Target Start/End: Complemental strand, 5729984 - 5729923
Alignment:
Q  59 tagagaaagtcttgtataggcacaagcatttagacacaaaatttaggcgcacacacataaat 120  Q
    |||||||||| |||| ||||||||| ||| |||  |||||||||||||||||||||||||||    
T  5729984 tagagaaagtattgtgtaggcacaaacatctaggtacaaaatttaggcgcacacacataaat 5729923  T

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Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 290 - 340
Target Start/End: Original strand, 22633021 - 22633072
Alignment:
Q  290 gaaagagggaggtgtactagaagtttctaaaatgatt-aaaaactaatttga 340  Q
    ||||||||||||| ||||| ||||||||||||||||| ||||||||||||||    
T  22633021 gaaagagggaggtatactataagtttctaaaatgattaaaaaactaatttga 22633072  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 205 - 255
Target Start/End: Complemental strand, 46668855 - 46668805
Alignment:
Q  205 atgtgtgcctaaatgtgtggtgttggtcttgtgaccaagtaagagtttctc 255  Q
    ||||||||||||||||| || ||||||||||||||||||||||||||||||    
T  46668855 atgtgtgcctaaatgtgaggcgttggtcttgtgaccaagtaagagtttctc 46668805  T

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Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 197 - 255
Target Start/End: Complemental strand, 52111408 - 52111350
Alignment:
Q  197 cttcttgtatgtgtgcctaaatgtgtggtgttggtcttgtgaccaagtaagagtttctc 255  Q
    |||||||| |||||| ||||||||| |||||||||||||||| ||||||||||||||||    
T  52111408 cttcttgtgtgtgtgtctaaatgtgaggtgttggtcttgtgatcaagtaagagtttctc 52111350  T

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Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 60 - 121
Target Start/End: Complemental strand, 52111545 - 52111484
Alignment:
Q  60 agagaaagtcttgtataggcacaagcatttagacacaaaatttaggcgcacacacataaatc 121  Q
    ||||||||||||||||||||||||  |||||||||||||||||| || ||||||| ||||||    
T  52111545 agagaaagtcttgtataggcacaaatatttagacacaaaatttaagcacacacacgtaaatc 52111484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 77 - 121
Target Start/End: Complemental strand, 25724327 - 25724283
Alignment:
Q  77 ggcacaagcatttagacacaaaatttaggcgcacacacataaatc 121  Q
    ||||||||||||||| |||||||||||| | ||||||||||||||    
T  25724327 ggcacaagcatttagtcacaaaatttagacacacacacataaatc 25724283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 59 - 119
Target Start/End: Original strand, 51051472 - 51051532
Alignment:
Q  59 tagagaaagtcttgtataggcacaagcatttagacacaaaatttaggcgcacacacataaa 119  Q
    |||||||| ||||| || | ||||||| |||||||| |  |||||||||||||||||||||    
T  51051472 tagagaaaatcttgcatggtcacaagcttttagacatattatttaggcgcacacacataaa 51051532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0504 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: scaffold0504
Description:

Target: scaffold0504; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 61 - 120
Target Start/End: Original strand, 6808 - 6867
Alignment:
Q  61 gagaaagtcttgtataggcacaagcatttagacacaaaatttaggcgcacacacataaat 120  Q
    |||| ||||||  |||| ||||||||||||| ||||||||||||||||||||||||||||    
T  6808 gagatagtcttacatagacacaagcatttaggcacaaaatttaggcgcacacacataaat 6867  T

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Target: scaffold0504; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 146 - 174
Target Start/End: Original strand, 6893 - 6921
Alignment:
Q  146 tagtcacatcaatcaatatcactttaatc 174  Q
    |||||||||||||||||||||||||||||    
T  6893 tagtcacatcaatcaatatcactttaatc 6921  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 59 - 121
Target Start/End: Original strand, 33222532 - 33222592
Alignment:
Q  59 tagagaaagtcttgtataggcacaagcatttagacacaaaatttaggcgcacacacataaatc 121  Q
    |||| |||||||||||||||||||||||| ||||||||||||||||   ||||||||||||||    
T  33222532 tagaaaaagtcttgtataggcacaagcatatagacacaaaatttag--acacacacataaatc 33222592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 73 - 121
Target Start/End: Complemental strand, 35034920 - 35034872
Alignment:
Q  73 tataggcacaagcatttagacacaaaatttaggcgcacacacataaatc 121  Q
    ||||| |||||||| |||||| ||||||||||||||||| |||||||||    
T  35034920 tatagacacaagcaattagacgcaaaatttaggcgcacatacataaatc 35034872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000009; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 206 - 254
Target Start/End: Complemental strand, 10243122 - 10243074
Alignment:
Q  206 tgtgtgcctaaatgtgtggtgttggtcttgtgaccaagtaagagtttct 254  Q
    |||||| ||||||||| |||||||||| |||||||||||||||||||||    
T  10243122 tgtgtgtctaaatgtgaggtgttggtcctgtgaccaagtaagagtttct 10243074  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 206 - 255
Target Start/End: Original strand, 36438090 - 36438139
Alignment:
Q  206 tgtgtgcctaaatgtgtggtgttggtcttgtgaccaagtaagagtttctc 255  Q
    |||||||||||||||| | |||||||||||||| ||||| ||||||||||    
T  36438090 tgtgtgcctaaatgtgagatgttggtcttgtgatcaagttagagtttctc 36438139  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 66 - 121
Target Start/End: Original strand, 31386134 - 31386189
Alignment:
Q  66 agtcttgtataggcacaagcatttagacacaaaatttaggcgcacacacataaatc 121  Q
    |||||||| ||| ||||||||||||||||||||||||| || |||| | |||||||    
T  31386134 agtcttgtgtagacacaagcatttagacacaaaatttaagcacacaaatataaatc 31386189  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 61 - 120
Target Start/End: Original strand, 36437947 - 36438006
Alignment:
Q  61 gagaaagtcttgtataggcacaagcatttagacacaaaatttaggcgcacacacataaat 120  Q
    ||||||||| ||| |||||| || |||||||||||||| ||||||| || ||||||||||    
T  36437947 gagaaagtcgtgtgtaggcataatcatttagacacaaagtttaggcacatacacataaat 36438006  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 206 - 256
Target Start/End: Original strand, 14724379 - 14724429
Alignment:
Q  206 tgtgtgcctaaatgtgtggtgttggtcttgtgaccaagtaagagtttctct 256  Q
    |||||||||||||||| |||||||||| |||||| | ||||||||||||||    
T  14724379 tgtgtgcctaaatgtgaggtgttggtcctgtgactaggtaagagtttctct 14724429  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 146 - 174
Target Start/End: Original strand, 45444104 - 45444132
Alignment:
Q  146 tagtcacatcaatcaatatcactttaatc 174  Q
    |||||||||||||||||||||||||||||    
T  45444104 tagtcacatcaatcaatatcactttaatc 45444132  T

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Target: scaffold0154 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 61 - 115
Target Start/End: Original strand, 10921 - 10975
Alignment:
Q  61 gagaaagtcttgtataggcacaagcatttagacacaaaatttaggcgcacacaca 115  Q
    |||| ||||||  |||| |||||||||||||||||||||||||| | ||||||||    
T  10921 gagatagtcttacatagacacaagcatttagacacaaaatttagacacacacaca 10975  T

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