View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2585_low_32 (Length: 347)

Name: NF2585_low_32
Description: NF2585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2585_low_32
NF2585_low_32
[»] chr3 (3 HSPs)
chr3 (20-328)||(3610671-3610984)
chr3 (52-85)||(11610590-11610623)
chr3 (53-85)||(41961584-41961616)
[»] chr8 (3 HSPs)
chr8 (20-85)||(25566879-25566944)
chr8 (51-85)||(15816063-15816097)
chr8 (52-85)||(39820509-39820542)
[»] chr1 (4 HSPs)
chr1 (46-85)||(398738-398777)
chr1 (51-85)||(16812636-16812670)
chr1 (53-85)||(18556390-18556422)
chr1 (51-87)||(26830667-26830703)
[»] chr2 (2 HSPs)
chr2 (51-86)||(23058388-23058423)
chr2 (51-85)||(11223798-11223832)
[»] scaffold0003 (1 HSPs)
scaffold0003 (51-85)||(241685-241719)
[»] chr7 (3 HSPs)
chr7 (51-85)||(598288-598322)
chr7 (52-85)||(29812603-29812636)
chr7 (51-83)||(18215144-18215176)
[»] chr6 (2 HSPs)
chr6 (51-85)||(7378059-7378093)
chr6 (51-85)||(9025450-9025484)
[»] chr5 (1 HSPs)
chr5 (51-85)||(43564961-43564995)
[»] chr4 (3 HSPs)
chr4 (52-85)||(11596302-11596335)
chr4 (41-85)||(18844428-18844470)
chr4 (51-83)||(8423665-8423697)


Alignment Details
Target: chr3 (Bit Score: 253; Significance: 1e-140; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 20 - 328
Target Start/End: Original strand, 3610671 - 3610984
Alignment:
Q  20 gtaattacaactgtcgttgtc-gtatcggtgtccg----ggacacgcctaatctgagaagtgtccgtgcttaatattagcagttagttaattttgttagg 114  Q
    |||||||| | |||||||||| ||||||||||| |    |||||||||||||||||| |||||| |||||||||||||| ||||||||||||||||||||    
T  3610671 gtaattaccagtgtcgttgtccgtatcggtgtcggacacggacacgcctaatctgagtagtgtctgtgcttaatattagtagttagttaattttgttagg 3610770  T
Q  115 aggagaaatcgaactctcaacctccttcttaatacttattcagcgtctcaactcatatcaccgattcactgaactacaaattgttttaactttattagtt 214  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||    
T  3610771 aggagaaatcgaactctcaacctccttcttaatacttattcagcgtctcaactcatatcatcgattgactgaactacaaattgttttaactttattagtt 3610870  T
Q  215 ctaagtaggtttgtataatatcttcatgtaaataaatcaaaacctcaagtatctgtgtataagaaaatgtgtttactttaaattttaaaattatatacca 314  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  3610871 ctaagtaggtttgtataatatcttcatgtaaataaatcaaaacctcaagtatctgtatataagaaaatgtgtttactttaaattttaaaattatatacca 3610970  T
Q  315 catttgcattgttt 328  Q
    ||||||||||||||    
T  3610971 catttgcattgttt 3610984  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 85
Target Start/End: Original strand, 11610590 - 11610623
Alignment:
Q  52 cgggacacgcctaatctgagaagtgtccgtgctt 85  Q
    |||||||||||||||||||| |||||||||||||    
T  11610590 cgggacacgcctaatctgaggagtgtccgtgctt 11610623  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 53 - 85
Target Start/End: Complemental strand, 41961616 - 41961584
Alignment:
Q  53 gggacacgcctaatctgagaagtgtccgtgctt 85  Q
    ||||||||||||||| |||||||||||||||||    
T  41961616 gggacacgcctaatccgagaagtgtccgtgctt 41961584  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 20 - 85
Target Start/End: Original strand, 25566879 - 25566944
Alignment:
Q  20 gtaattacaactgtcgttgtcgtatcggtgtccgggacacgcctaatctgagaagtgtccgtgctt 85  Q
    |||||||||| ||||| |||||| | |||||||||||||||||||||| ||| |||||| ||||||    
T  25566879 gtaattacaagtgtcggtgtcgtgttggtgtccgggacacgcctaatccgaggagtgtctgtgctt 25566944  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 51 - 85
Target Start/End: Complemental strand, 15816097 - 15816063
Alignment:
Q  51 ccgggacacgcctaatctgagaagtgtccgtgctt 85  Q
    ||||||||||||||||| |||||||||||||||||    
T  15816097 ccgggacacgcctaatccgagaagtgtccgtgctt 15816063  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 85
Target Start/End: Original strand, 39820509 - 39820542
Alignment:
Q  52 cgggacacgcctaatctgagaagtgtccgtgctt 85  Q
    |||||||||||||||| |||||||||||||||||    
T  39820509 cgggacacgcctaatccgagaagtgtccgtgctt 39820542  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 46 - 85
Target Start/End: Complemental strand, 398777 - 398738
Alignment:
Q  46 ggtgtccgggacacgcctaatctgagaagtgtccgtgctt 85  Q
    ||||||||||||||||||||||| ||||||||||||||||    
T  398777 ggtgtccgggacacgcctaatctaagaagtgtccgtgctt 398738  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 51 - 85
Target Start/End: Original strand, 16812636 - 16812670
Alignment:
Q  51 ccgggacacgcctaatctgagaagtgtccgtgctt 85  Q
    ||||||||||||||||||||| |||||||||||||    
T  16812636 ccgggacacgcctaatctgaggagtgtccgtgctt 16812670  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 53 - 85
Target Start/End: Complemental strand, 18556422 - 18556390
Alignment:
Q  53 gggacacgcctaatctgagaagtgtccgtgctt 85  Q
    ||||||||||||||| |||||||||||||||||    
T  18556422 gggacacgcctaatccgagaagtgtccgtgctt 18556390  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 51 - 87
Target Start/End: Original strand, 26830667 - 26830703
Alignment:
Q  51 ccgggacacgcctaatctgagaagtgtccgtgcttaa 87  Q
    ||||||||||||||||| ||| |||||||||||||||    
T  26830667 ccgggacacgcctaatcagaggagtgtccgtgcttaa 26830703  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 51 - 86
Target Start/End: Complemental strand, 23058423 - 23058388
Alignment:
Q  51 ccgggacacgcctaatctgagaagtgtccgtgctta 86  Q
    ||||||||||||||||| ||||||||||||||||||    
T  23058423 ccgggacacgcctaatccgagaagtgtccgtgctta 23058388  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 51 - 85
Target Start/End: Complemental strand, 11223832 - 11223798
Alignment:
Q  51 ccgggacacgcctaatctgagaagtgtccgtgctt 85  Q
    ||||||||||||||||||||| |||||||||||||    
T  11223832 ccgggacacgcctaatctgaggagtgtccgtgctt 11223798  T

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Target: scaffold0003 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 51 - 85
Target Start/End: Original strand, 241685 - 241719
Alignment:
Q  51 ccgggacacgcctaatctgagaagtgtccgtgctt 85  Q
    ||||||||||||||||| |||||||||||||||||    
T  241685 ccgggacacgcctaatccgagaagtgtccgtgctt 241719  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 51 - 85
Target Start/End: Original strand, 598288 - 598322
Alignment:
Q  51 ccgggacacgcctaatctgagaagtgtccgtgctt 85  Q
    ||||||||||||||||| |||||||||||||||||    
T  598288 ccgggacacgcctaatccgagaagtgtccgtgctt 598322  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 85
Target Start/End: Complemental strand, 29812636 - 29812603
Alignment:
Q  52 cgggacacgcctaatctgagaagtgtccgtgctt 85  Q
    |||||||||||||||| |||||||||||||||||    
T  29812636 cgggacacgcctaatccgagaagtgtccgtgctt 29812603  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 51 - 83
Target Start/End: Complemental strand, 18215176 - 18215144
Alignment:
Q  51 ccgggacacgcctaatctgagaagtgtccgtgc 83  Q
    ||||||||||||||||||||| |||||||||||    
T  18215176 ccgggacacgcctaatctgaggagtgtccgtgc 18215144  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 51 - 85
Target Start/End: Original strand, 7378059 - 7378093
Alignment:
Q  51 ccgggacacgcctaatctgagaagtgtccgtgctt 85  Q
    |||||||||| ||||||||||||||||||||||||    
T  7378059 ccgggacacggctaatctgagaagtgtccgtgctt 7378093  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 51 - 85
Target Start/End: Complemental strand, 9025484 - 9025450
Alignment:
Q  51 ccgggacacgcctaatctgagaagtgtccgtgctt 85  Q
    ||||||||||||||||| |||||||||||||||||    
T  9025484 ccgggacacgcctaatccgagaagtgtccgtgctt 9025450  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 51 - 85
Target Start/End: Original strand, 43564961 - 43564995
Alignment:
Q  51 ccgggacacgcctaatctgagaagtgtccgtgctt 85  Q
    ||||||||||||||||| |||||||||||||||||    
T  43564961 ccgggacacgcctaatccgagaagtgtccgtgctt 43564995  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 85
Target Start/End: Complemental strand, 11596335 - 11596302
Alignment:
Q  52 cgggacacgcctaatctgagaagtgtccgtgctt 85  Q
    |||||||||||||||||||| |||||||||||||    
T  11596335 cgggacacgcctaatctgaggagtgtccgtgctt 11596302  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 85
Target Start/End: Complemental strand, 18844470 - 18844428
Alignment:
Q  41 gtatcggtgtccgggacacgcctaatctgagaagtgtccgtgctt 85  Q
    |||||||||||  |||||||||||||| |||||||||||||||||    
T  18844470 gtatcggtgtc--ggacacgcctaatccgagaagtgtccgtgctt 18844428  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 51 - 83
Target Start/End: Complemental strand, 8423697 - 8423665
Alignment:
Q  51 ccgggacacgcctaatctgagaagtgtccgtgc 83  Q
    ||||||||||||||||| |||||||||||||||    
T  8423697 ccgggacacgcctaatcggagaagtgtccgtgc 8423665  T

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