View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2585_low_35 (Length: 338)
Name: NF2585_low_35
Description: NF2585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2585_low_35 |
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Alignment Details
Target: chr2 (Bit Score: 105; Significance: 2e-52; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 18 - 199
Target Start/End: Complemental strand, 1929812 - 1929637
Alignment:
| Q |
18 |
agccacaattgccaacaattccaaacttaggtgttccaatccctaatgtaccaactttgcctcaagtaccaactgtacctcaaattcctcagattcctcc |
117 |
Q |
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| T |
1929812 |
agccacaattgccaacaattccaaacttaggtgtt---------------ccaactttgcctcaagtaccaactgtacctcaaattcctcagattcctac |
1929728 |
T |
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| Q |
118 |
tgttcctggtgtgccacaaattcctcagatt---------cctggtgtgcctaaaccataagtacctaaagttcatgagttctagtaatct |
199 |
Q |
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| T |
1929727 |
tgttcctggtgtgccacaaattcctcagattcctggtgtgcctggtgtgcctaaaccataagtacctaaagttcatgagttctagtaatct |
1929637 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 267 - 323
Target Start/End: Complemental strand, 1929573 - 1929517
Alignment:
| Q |
267 |
catttgtacttcatgactatgtaccatattgaagcatatgttgggttcaatttttat |
323 |
Q |
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| T |
1929573 |
catttgtactttatgactatgtaccaaattgaagcatatgttgggttcaatttttat |
1929517 |
T |
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