View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2585_low_4 (Length: 592)
Name: NF2585_low_4
Description: NF2585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2585_low_4 |
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| [»] scaffold0050 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 515; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 515; E-Value: 0
Query Start/End: Original strand, 1 - 576
Target Start/End: Complemental strand, 29020130 - 29019551
Alignment:
| Q |
1 |
tacgaggataggtaagtacgtcatagtttgattttcctgtcttttcacaatatttgttccattcagattgttagacgaacttcaactcattacacattta |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||| | |
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| T |
29020130 |
tacgaggataggtaagtacgtcatagtttgattttcctgtctttttacaatatttgttccattcagattgttagacggacttcaactcattacacattca |
29020031 |
T |
|
| Q |
101 |
actaatgttgacttgggcataacggctataaattttaagatataagtattccaatcactttatttgtatcacttttgtagatattgtgtcgttttatgct |
200 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | |
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| T |
29020030 |
actaatgttgacttgggcataacggctataaattctaagatataagtattccaatcactttatttgtatcacttttgtagatattgtgtcgctttatgtt |
29019931 |
T |
|
| Q |
201 |
attaacttaactgttatgagtttgtttccaactacatcctttttctggtttagccttgtattgttttcgatgtaatatacctatttgaataaattaatat |
300 |
Q |
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||||||||||||||| ||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| ||||| |
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| T |
29019930 |
attaacttaactgttgtgagtttgttttcaactacatcctttttctcgtttagccttgtattgttttcgatgtaatatacatatttgaataaatgaatat |
29019831 |
T |
|
| Q |
301 |
cttactttcagccaaaataattttctgctcattgtttacaacaatggctac----aatataccctttcataccttgtttgtaatcataaataagaagaaa |
396 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
29019830 |
cttactttcagccaaaataattttctgctcattgtttacaacaatggctacaattaatataccctttcataccttgtttgtaatcataaataaggagaaa |
29019731 |
T |
|
| Q |
397 |
acatagtacatggaagtgtatcacttggtgacttaaccatggactcaaccataaactccctccatataccacccattggacatgccaagttttcagaaca |
496 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29019730 |
acatagtacatggaagtgtatcacttggtgacttaaccatggactcaaccataaactccctccatataccacccattggacatgccaagttttcagaaca |
29019631 |
T |
|
| Q |
497 |
aacctcaactgctcctgcaggtatggttgcttcaaatctcatgagctttgcatattcagtcaatagatgtaacatataat |
576 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29019630 |
aacctcaactgctcctgcaggtatggttgcttcaaatctcatgagctttgcatattcagtcaatagatgtaacatataat |
29019551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 384 - 576
Target Start/End: Complemental strand, 29041436 - 29041244
Alignment:
| Q |
384 |
aaataagaagaaaacatagtacatggaagtgtatcacttggtgacttaaccatggactcaaccataaactccctccatataccacccattggacatgcca |
483 |
Q |
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||||||| ||||||||| | ||||||| |||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| |||||||| |
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| T |
29041436 |
aaataaggagaaaacattgcacatggaggtgtgtcacttggtgacttaaccatggactcaaccataaattccctccatataccatccattgaacatgcca |
29041337 |
T |
|
| Q |
484 |
agttttcagaacaaacctcaactgctcctgcaggtatggttgcttcaaatctcatgagctttgcatattcagtcaatagatgtaacatataat |
576 |
Q |
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| T |
29041336 |
cattttcagtacaaacctcaatagcttctgcaggtatttttggttcaaatcttatgagatttgcatattcagtcaatagatgtaacatataat |
29041244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 167 - 227
Target Start/End: Complemental strand, 32988105 - 32988045
Alignment:
| Q |
167 |
tatcacttttgtagatattgtgtcgttttatgctattaacttaactgttatgagtttgttt |
227 |
Q |
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|||||| |||||||||||| | | |||||||||||||||||||| |||||| |||||||| |
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| T |
32988105 |
tatcacatttgtagatattttattgttttatgctattaacttaaatgttatttgtttgttt |
32988045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 256 - 300
Target Start/End: Complemental strand, 46367768 - 46367724
Alignment:
| Q |
256 |
ttgtattgttttcgatgtaatatacctatttgaataaattaatat |
300 |
Q |
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| T |
46367768 |
ttgtattgttttcgatgtaatttaccaatttgaataaatgaatat |
46367724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0050 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0050
Description:
Target: scaffold0050; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 174 - 226
Target Start/End: Complemental strand, 65972 - 65920
Alignment:
| Q |
174 |
tttgtagatattgtgtcgttttatgctattaacttaactgttatgagtttgtt |
226 |
Q |
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||||||| ||| ||||||| |||||||||||||| | ||||||||||||||| |
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| T |
65972 |
tttgtaggcattttgtcgttgtatgctattaacttgagtgttatgagtttgtt |
65920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 182 - 226
Target Start/End: Complemental strand, 4921692 - 4921648
Alignment:
| Q |
182 |
tattgtgtcgttttatgctattaacttaactgttatgagtttgtt |
226 |
Q |
| |
|
|||| |||||||||||||||||||| | | ||||||||||||||| |
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| T |
4921692 |
tattttgtcgttttatgctattaacatgaatgttatgagtttgtt |
4921648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 174 - 226
Target Start/End: Original strand, 41630660 - 41630712
Alignment:
| Q |
174 |
tttgtagatattgtgtcgttttatgctattaacttaactgttatgagtttgtt |
226 |
Q |
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|||||||| ||| ||||||| ||||||||||||||| |||| |||||||||| |
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| T |
41630660 |
tttgtagacattttgtcgttgtatgctattaacttaggtgttgtgagtttgtt |
41630712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 174 - 226
Target Start/End: Complemental strand, 28533885 - 28533833
Alignment:
| Q |
174 |
tttgtagatattgtgtcgttttatgctattaacttaactgttatgagtttgtt |
226 |
Q |
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||||||| |||| ||||||| |||||||||||||| | |||| |||||||||| |
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| T |
28533885 |
tttgtaggtattttgtcgttgtatgctattaacttgagtgttgtgagtttgtt |
28533833 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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