View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2585_low_47 (Length: 267)
Name: NF2585_low_47
Description: NF2585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2585_low_47 |
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Alignment Details
Target: chr4 (Bit Score: 179; Significance: 1e-96; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 74 - 252
Target Start/End: Original strand, 21080594 - 21080772
Alignment:
| Q |
74 |
acaaacaaatgcttaacaaacttcaacaaaatttctaactaactgagtttacttgttcaacaagtaactcccttaacttctaatcttgaactaactaact |
173 |
Q |
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| T |
21080594 |
acaaacaaatgcttaacaaacttcaacaaaatttctaactaactgagtttacttgttcaacaagtaactcccttaacttctaatcttgaactaactaact |
21080693 |
T |
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| Q |
174 |
aaccaactgaattataacaccctaacacacctcctaattcattagttagtgacttcaaccatgcctaacttgttcctca |
252 |
Q |
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| T |
21080694 |
aaccaactgaattataacaccctaacacacctcctaattcattagttagtgacttcaaccatgcctaacttgttcctca |
21080772 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 21070303 - 21070344
Alignment:
| Q |
19 |
taatatgtatggacttggcactcttaaagcagataatttcaa |
60 |
Q |
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| T |
21070303 |
taatatgtatggacttggcactcttaaagcagataatctcaa |
21070344 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 78 - 173
Target Start/End: Complemental strand, 20889807 - 20889712
Alignment:
| Q |
78 |
acaaatgcttaacaaacttcaacaaaatttctaactaactgagtttacttgttcaacaagtaactcccttaacttctaatcttgaactaactaact |
173 |
Q |
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| T |
20889807 |
acaaaagcttaacaaacttctaacaattttttaactaattgagtttacttgttcaacaagtaactcccttaactcctaattttaaactaactaact |
20889712 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 194 - 252
Target Start/End: Original strand, 28451018 - 28451077
Alignment:
| Q |
194 |
cctaacacacctcct-aattcattagttagtgacttcaaccatgcctaacttgttcctca |
252 |
Q |
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| T |
28451018 |
cctaatacacctccttaattcattagttagtgacttcaaccattcctagattgttcctca |
28451077 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 204 - 241
Target Start/End: Complemental strand, 20418125 - 20418088
Alignment:
| Q |
204 |
ctcctaattcattagttagtgacttcaaccatgcctaa |
241 |
Q |
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| T |
20418125 |
ctcctagttcattagttagtgacttcaaccatgcctaa |
20418088 |
T |
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