View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2585_low_5 (Length: 589)
Name: NF2585_low_5
Description: NF2585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2585_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 517; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 517; E-Value: 0
Query Start/End: Original strand, 12 - 572
Target Start/End: Original strand, 31829209 - 31829769
Alignment:
| Q |
12 |
atgaataattataggtatgtttgttacattttgcatagttgttataaaattttgattaattggtatcttattgaattctttgttatgtatacagaatctt |
111 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| |||||||||||||||||| |
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| T |
31829209 |
atgaatcattataggtatgtttgttacattttgcatagttgttataaaattttgattaattgttatcttattgagttctttcttatgtatacagaatctt |
31829308 |
T |
|
| Q |
112 |
ttcggcgacttggaatgtagctggacgatcgcctccgagttatttaaatctggaagattggcttcatacatctcctcctgctgatatttatgttctaggg |
211 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31829309 |
ttcggcgacttggaatgtagctggacgatctcctccgagttatttaaatctggaagattggcttcatacatctcctcctgctgatatttatgttctaggg |
31829408 |
T |
|
| Q |
212 |
taagtctctgattatgtaaattgtaatgcataacctcttctttagctatataatggtcataatctgaaataatttctttcatatttcactcaggtttcaa |
311 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31829409 |
taagtctctgattatgtaaattgtaatgtataacctcttctttagatatataatggtcataatctgaaataatttctttcatatttcactcaggtttcaa |
31829508 |
T |
|
| Q |
312 |
gaaattgtacctctcaatgctggaaatgttttggggacagaagacaatgctcctgctagaaaatggctagctcttattagaaagacattaaacagtcttc |
411 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
31829509 |
gaaattgtacctctcaatgctggaaatgttttggggacagaagacaatgctcctgctagaaaatggctagctcttattagaaagacactaaacagtcttc |
31829608 |
T |
|
| Q |
412 |
ccggaacaagcggtgaatgccacactaattcaccacttcctgatcctgttgtagagttagattctgattttgagggatcaatgaggcagaaagcaacctc |
511 |
Q |
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| T |
31829609 |
ccggaacaagtggtgaatgccacactaattcaccacttcctgatcctgttgttgagttagattctgattttgagggatcaatgaggcagaaggcaacctc |
31829708 |
T |
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| Q |
512 |
tttcttccatcgcaggtcgttccaatctttgagtcatagtatgagaatggacaatgacatg |
572 |
Q |
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| T |
31829709 |
tttcttccatcgcaggtcgttccaatctttgagtcatagtatgagaatggacaatgacatg |
31829769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 122 - 215
Target Start/End: Original strand, 46763545 - 46763638
Alignment:
| Q |
122 |
tggaatgtagctggacgatcgcctccgagttatttaaatctggaagattggcttcatacatctcctcctgctgatatttatgttctagggtaag |
215 |
Q |
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| T |
46763545 |
tggaatgtagctggaagatccccaccaagtaatttgagtgtagatgattggcttcattcctcacctccagctgacatttatgttcttgggtaag |
46763638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 115; Significance: 4e-58; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 299 - 573
Target Start/End: Complemental strand, 38123068 - 38122794
Alignment:
| Q |
299 |
actcaggtttcaagaaattgtacctctcaatgctggaaatgttttggggacagaagacaatgctcctgctagaaaatggctagctcttattagaaagaca |
398 |
Q |
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||||||||||||||||||||| |||||||| || | ||||||||||| ||||||||||||| |||||| | |||||||||||| ||||| || |||||| |
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| T |
38123068 |
actcaggtttcaagaaattgtgcctctcaacgccgttaatgttttgggaacagaagacaatggtcctgcaaaaaaatggctagcccttataaggaagaca |
38122969 |
T |
|
| Q |
399 |
ttaaacagtcttcccggaacaagcggtgaatgccacactaattcaccacttcctgatcctgttgtagagttagattctgattttgagggatcaatgaggc |
498 |
Q |
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| |||| ||||| |||||||| |||| || | ||||| ||| ||| | |||| |||| |||||||||||||| ||||||| |||||||||||||||| |
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| T |
38122968 |
ctgaacaaccttccgggaacaagtggtggatacaacactccttctccaatccctgctcctattgtagagttagatgctgatttcgagggatcaatgaggc |
38122869 |
T |
|
| Q |
499 |
agaaagcaacctctttcttccatcgcaggtcgttccaatctttgagtcatagtatgagaatggacaatgacatgt |
573 |
Q |
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| T |
38122868 |
agaaggcaacctctttcttccatcggaagtccttccaagccatgagtcgtagtatgagaatggataatgagatgt |
38122794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 143 - 214
Target Start/End: Complemental strand, 38123225 - 38123154
Alignment:
| Q |
143 |
cctccgagttatttaaatctggaagattggcttcatacatctcctcctgctgatatttatgttctagggtaa |
214 |
Q |
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| T |
38123225 |
cctccaagttatttaagtctggaagattggcttcacatttctccacatgctgatatctatgttcttgggtaa |
38123154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 327 - 415
Target Start/End: Original strand, 1084355 - 1084443
Alignment:
| Q |
327 |
aatgctggaaatgttttggggacagaagacaatgctcctgctagaaaatggctagctcttattagaaagacattaaacagtcttcccgg |
415 |
Q |
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|||||||| ||| | || ||| ||||||| |||| ||||| | ||||||||||||||| ||| |||| | ||||||||||||||||| |
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| T |
1084355 |
aatgctggtaatatcttaggggcagaagataatggccctgccaaaaaatggctagctctcattggaaatgctttaaacagtcttcccgg |
1084443 |
T |
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