View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2585_low_52 (Length: 249)
Name: NF2585_low_52
Description: NF2585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2585_low_52 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 186; Significance: 1e-101; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 4 - 245
Target Start/End: Original strand, 14182579 - 14182820
Alignment:
| Q |
4 |
ttcaagatttgttgttcgttgttcagtgatatatctgttcaacgaactcccacatgaagataggacagaatccatggagtttattatccgtaagcatgct |
103 |
Q |
| |
|
||||||| |||||||||| |||||||||||| |||||||||||||||||||||||||||||||||| ||||| |||||||||||| ||| |||||||||| |
|
|
| T |
14182579 |
ttcaagagttgttgttcgctgttcagtgatagatctgttcaacgaactcccacatgaagataggacggaatcaatggagtttattttccataagcatgct |
14182678 |
T |
|
| Q |
104 |
gatttgttgtatcgatttcctaacggattgattgaggtaggtgatgttggaatgtcagatgaagatgtttttacatcctctccactgacttcggcacttg |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
14182679 |
gatttgttgtatcgatttcctaacggattgatcgaggtaggtgatgttggaatgtcagatgatgatgtttttacatcctctctactgacttcggcacttg |
14182778 |
T |
|
| Q |
204 |
aagatgtttacgtgaggttattttctgttccctatgcttctc |
245 |
Q |
| |
|
||||||||||||||||||| ||||||| || ||||| ||||| |
|
|
| T |
14182779 |
aagatgtttacgtgaggttgttttctggtcgctatgtttctc |
14182820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 4 - 245
Target Start/End: Original strand, 14178729 - 14178970
Alignment:
| Q |
4 |
ttcaagatttgttgttcgttgttcagtgatatatctgttcaacgaactcccacatgaagataggacagaatccatggagtttattatccgtaagcatgct |
103 |
Q |
| |
|
||||||| |||||||||| |||||||||||| |||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| |||||||| | |
|
|
| T |
14178729 |
ttcaagagttgttgttcgatgttcagtgataaatctgttcaacgaactcccacatgaagataggacggaatcaatggagtttattatccataagcatgat |
14178828 |
T |
|
| Q |
104 |
gatttgttgtatcgatttcctaacggattgattgaggtaggtgatgttggaatgtcagatgaagatgtttttacatcctctccactgacttcggcacttg |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| ||||||||||||||| |||||||| |||||||| |
|
|
| T |
14178829 |
gatttgttgtatcgatttcctaacggattgatcgaggtaggtgatgttggaatgtcagatgacgatatttttacatcctctctactgactttggcacttg |
14178928 |
T |
|
| Q |
204 |
aagatgtttacgtgaggttattttctgttccctatgcttctc |
245 |
Q |
| |
|
||||||||||||||||||| |||||||||| ||||| ||||| |
|
|
| T |
14178929 |
aagatgtttacgtgaggttgttttctgttcgctatgtttctc |
14178970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 36 - 230
Target Start/End: Original strand, 14184998 - 14185192
Alignment:
| Q |
36 |
atctgttcaacgaactcccacatgaagataggacagaatccatggagtttattatccgtaagcatgctgatttgttgtatcgatttcctaacggattgat |
135 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14184998 |
atctgttcaacgaactcccacatgaagataggacggaatccatggagtttattttccgtaagcatgctgatttgttgtatcgatttcctaacggattgat |
14185097 |
T |
|
| Q |
136 |
tgaggtaggtgatgttggaatgtcagatgaagatgtttttacatcctctccactgacttcggcacttgaagatgtttacgtgaggttattttctg |
230 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||| | ||||||| |
|
|
| T |
14185098 |
cgaggtaggtgatgttggaatgtcagatgacgatgtttttacatcctctctactgacttcggcacttgaagatgtttacgtgaggctgttttctg |
14185192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University