View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2585_low_6 (Length: 588)

Name: NF2585_low_6
Description: NF2585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2585_low_6
NF2585_low_6
[»] chr3 (3 HSPs)
chr3 (7-356)||(20750082-20750434)
chr3 (417-573)||(20750515-20750671)
chr3 (310-356)||(38182618-38182664)
[»] scaffold1451 (2 HSPs)
scaffold1451 (116-348)||(1078-1316)
scaffold1451 (461-539)||(1428-1504)
[»] scaffold0526 (1 HSPs)
scaffold0526 (116-219)||(9931-10034)
[»] chr6 (1 HSPs)
chr6 (283-348)||(12519835-12519900)
[»] chr5 (2 HSPs)
chr5 (283-348)||(4052040-4052105)
chr5 (283-348)||(30314423-30314488)
[»] chr4 (1 HSPs)
chr4 (283-348)||(788108-788173)
[»] chr1 (1 HSPs)
chr1 (283-348)||(25073772-25073837)


Alignment Details
Target: chr3 (Bit Score: 255; Significance: 1e-141; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 255; E-Value: 1e-141
Query Start/End: Original strand, 7 - 356
Target Start/End: Original strand, 20750082 - 20750434
Alignment:
Q  7 tcgaagaaaatctctttgaattctcagaatcttcttctgtacctttattgacaacttcnnnnnnnnnnnnnnnnnnnnttagcatcaacgactgttacat 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||                    ||||||||||||||||||||||    
T  20750082 tcgaagaaaatctctttgaattctcagaatcttcttctgtacctttattgacagcttcaaaaaagaaagataaaaaaattagcatcaacgactgttacat 20750181  T
Q  107 gggttaaagcacaagaaagcatacaaagagcgaagccaaagtccttttgagcctaagagtctaaagtcaatttgaaggaaggaacctaacaattacacca 206  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  20750182 gggttaaagcacaagaaagcatacaaagagtgaagccaaagtccttttgagcctaagagtctaaagtcaatttgaaggaaggaaccaaacaattacacca 20750281  T
Q  207 acgaactaaacaacaaa---aacatgtcataaatcacctagatatggaagcttacaatccctagaaacaaagctcgatgaagatggtggcatgggctgca 303  Q
    |||||||||||||||||   ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20750282 acgaactaaacaacaaaaacaacatgtcataaatcacctagatctggaagcttacaatccctagaaacaaagctcgatgaagatggtggcatgggctgca 20750381  T
Q  304 aagatgaagatgtttcactttaaacccctaaagggttatgaagcaatttgaac 356  Q
     |||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  20750382 gagatgaagatgtttcactttaaacccctaatgggttatgaagcaatttgaac 20750434  T

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Target: chr3; HSP #2
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 417 - 573
Target Start/End: Original strand, 20750515 - 20750671
Alignment:
Q  417 tcagatgaacgagcattagcgtggcgagtaacccttaagtggataaagaataatgaacccagatgtgagaaataacacatctagaaatgcaacaaagaac 516  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  20750515 tcagatgaacgagcattagcgtggcgagtaacccttaagtggataaacaataatgaacccagatgtgagaaatagcacatctagaaatgcaacaaagaac 20750614  T
Q  517 ccagatgagatatacaccacaccatgaacaaattgaagaacactaacatggtttatg 573  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20750615 ccagatgagatatacaccacaccatgaacaaattgaagaacactaacatggtttatg 20750671  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 310 - 356
Target Start/End: Original strand, 38182618 - 38182664
Alignment:
Q  310 aagatgtttcactttaaacccctaaagggttatgaagcaatttgaac 356  Q
    ||||||||||||||||||||| ||| ||||||||||| |||| ||||    
T  38182618 aagatgtttcactttaaacccttaatgggttatgaagtaattcgaac 38182664  T

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Target: scaffold1451 (Bit Score: 72; Significance: 2e-32; HSPs: 2)
Name: scaffold1451
Description:

Target: scaffold1451; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 116 - 348
Target Start/End: Original strand, 1078 - 1316
Alignment:
Q  116 cacaagaaagcatacaaagagcgaagccaaagtccttttgagcctaagagtctaaagtcaatttgaaggaaggaacctaacaattacaccaacgaactaa 215  Q
    |||||||||||||| | || | |||||| |||| |||| ||||| |||||||||||| |||| ||||||||| |||| ||||||||||||||| ||||||    
T  1078 cacaagaaagcatatagagcgtgaagccgaagttctttcgagccaaagagtctaaagccaatatgaaggaagaaacccaacaattacaccaacaaactaa 1177  T
Q  216 acaacaaaaa------catgtcataaatcacctagatatggaagcttacaatccctagaaacaaagctcgatgaagatggtggcatgggctgcaaagatg 309  Q
    ||||||||||      ||  |||||||||  ||||||   ||||||||||||||| ||||| ||| | | ||||||||||| || | || |||| |||||    
T  1178 acaacaaaaacaacatcacatcataaatcgtctagatcgtgaagcttacaatcccaagaaaaaaatcccaatgaagatggtagcctaggttgcagagatg 1277  T
Q  310 aagatgtttcactttaaacccctaaagggttatgaagca 348  Q
    | |||| |||||||||||| |  || |||||||||||||    
T  1278 acgatgcttcactttaaacactaaatgggttatgaagca 1316  T

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Target: scaffold1451; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 461 - 539
Target Start/End: Original strand, 1428 - 1504
Alignment:
Q  461 aaagaataatgaacccagatgtgagaaataacacatctagaaatgcaacaaagaacccagatgagatatacaccacacc 539  Q
    |||||||| |||||| |||||||||||| |  ||  ||||||||||||||| ||||||| ||| || ||||||||||||    
T  1428 aaagaatagtgaaccgagatgtgagaaacacgac--ctagaaatgcaacaatgaacccaaatgcgagatacaccacacc 1504  T

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Target: scaffold0526 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0526
Description:

Target: scaffold0526; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 116 - 219
Target Start/End: Complemental strand, 10034 - 9931
Alignment:
Q  116 cacaagaaagcatacaaagagcgaagccaaagtccttttgagcctaagagtctaaagtcaatttgaaggaaggaacctaacaattacaccaacgaactaa 215  Q
    |||||||||||||||  || || ||||  || | |||||||| | || ||||||||| |||| |||||||||||||||||| |||||||| || ||||||    
T  10034 cacaagaaagcataccgagcgcaaagctgaaattcttttgagacaaaaagtctaaagccaatatgaaggaaggaacctaaccattacacccacaaactaa 9935  T
Q  216 acaa 219  Q
    ||||    
T  9934 acaa 9931  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 283 - 348
Target Start/End: Complemental strand, 12519900 - 12519835
Alignment:
Q  283 aagatggtggcatgggctgcaaagatgaagatgtttcactttaaacccctaaagggttatgaagca 348  Q
    |||||||||||||||||||||||||  | |||| ||||| |||||||| ||| || ||||||||||    
T  12519900 aagatggtggcatgggctgcaaagacaatgatgattcacattaaacccttaacggattatgaagca 12519835  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 283 - 348
Target Start/End: Complemental strand, 4052105 - 4052040
Alignment:
Q  283 aagatggtggcatgggctgcaaagatgaagatgtttcactttaaacccctaaagggttatgaagca 348  Q
    ||||||||||||||||||||| |||  | |||| ||||| |||||||| ||| || ||||||||||    
T  4052105 aagatggtggcatgggctgcagagacaatgatgattcacattaaacccttaacggattatgaagca 4052040  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 283 - 348
Target Start/End: Complemental strand, 30314488 - 30314423
Alignment:
Q  283 aagatggtggcatgggctgcaaagatgaagatgtttcactttaaacccctaaagggttatgaagca 348  Q
    ||||||||||||||||||||| |||  | |||| ||||| |||||||| ||| || ||||||||||    
T  30314488 aagatggtggcatgggctgcagagacaatgatgattcacattaaacccttaacggattatgaagca 30314423  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 283 - 348
Target Start/End: Complemental strand, 788173 - 788108
Alignment:
Q  283 aagatggtggcatgggctgcaaagatgaagatgtttcactttaaacccctaaagggttatgaagca 348  Q
    ||||||||||||||||||||| |||  | |||| ||||| |||||||| ||| || ||||||||||    
T  788173 aagatggtggcatgggctgcagagacaatgatgattcacattaaacccttaacggattatgaagca 788108  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 283 - 348
Target Start/End: Original strand, 25073772 - 25073837
Alignment:
Q  283 aagatggtggcatgggctgcaaagatgaagatgtttcactttaaacccctaaagggttatgaagca 348  Q
    ||||||||||||||||||||| |||  | |||| ||||| |||||||| ||| || ||||||||||    
T  25073772 aagatggtggcatgggctgcagagacaatgatgattcacattaaacccttaacggattatgaagca 25073837  T

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