View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2585_low_65 (Length: 204)
Name: NF2585_low_65
Description: NF2585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2585_low_65 |
 | |
|
| [»] chr6 (1 HSPs) |
| |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 156; Significance: 4e-83; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 156; E-Value: 4e-83
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 12188807 - 12189009
Alignment:
| Q |
1 |
cacccgcgagtacccgaacccgcccgtattggataagtaaaaacgacgtcgttttgaagagcgaggagaccactagccctaagatctgacccattcattt |
100 |
Q |
| |
|
|||| ||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| | ||||||||||| ||||| ||||| |||||||||||| |
|
|
| T |
12188807 |
cacctgcgggtacccgaacccgccagtattggataagtaaaaacgacgtcgttttgaagagtggggagaccactaacccta-gatctaacccattcattt |
12188905 |
T |
|
| Q |
101 |
catttctcctaaaaaattctctcactcacctcacaccctttcaccttcctcttcaaaccctagtgccgccgccgcatctaaccaccaccaccacaccatc |
200 |
Q |
| |
|
||||||| |||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12188906 |
catttcttctaaaaaattctctcattcacctcacactctttcaccttcctcttcaaaccctagtgccgccgccgcatctaaccaccaccaccacaccatc |
12189005 |
T |
|
| Q |
201 |
aaat |
204 |
Q |
| |
|
|||| |
|
|
| T |
12189006 |
aaat |
12189009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 104; Significance: 5e-52; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 4 - 204
Target Start/End: Original strand, 2430330 - 2430542
Alignment:
| Q |
4 |
ccgcgagtacccgaacccgcccgtattggataagtaaaaacgacgtcgtttt--------gaagagcgaggagac-cactagccctaagatctgacccat |
94 |
Q |
| |
|
||||| |||||||||||| |||||||||||| |||||||||||||||||||| |||||| | |||||| ||||| ||||| |||||||| ||| |
|
|
| T |
2430330 |
ccgcgggtacccgaacccacccgtattggattagtaaaaacgacgtcgttttagtatattgaagagtggggagactcactaacccta-gatctgactcat |
2430428 |
T |
|
| Q |
95 |
tcatttcatt----tctcctaaaaaattctctcactcacctcacaccctttcaccttcctcttcaaaccctagtgccgccgccgcatctaaccaccacca |
190 |
Q |
| |
|
|||||||||| ||| ||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
2430429 |
tcatttcattcatttcttctaaaaaattctctcactcgcctcacactctttcaccttcctcttcaaaccctagtgccgccgccgcctctaaccaccacca |
2430528 |
T |
|
| Q |
191 |
ccacaccatcaaat |
204 |
Q |
| |
|
|| ||||||||||| |
|
|
| T |
2430529 |
cctcaccatcaaat |
2430542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 49; Significance: 3e-19; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 100 - 192
Target Start/End: Complemental strand, 14087546 - 14087454
Alignment:
| Q |
100 |
tcatttctcctaaaaaattctctcactcacctcacaccctttcaccttcctcttcaaaccctagtgccgccgccgcatctaaccaccaccacc |
192 |
Q |
| |
|
|||||||| ||| ||| ||||||| ||| |||||||| |||||||||||||| ||||||||||||||||||||| ||| |||||||||||| |
|
|
| T |
14087546 |
tcatttcttctacaaatttctctccctcgcctcacactctttcaccttcctccacaaaccctagtgccgccgccgtttctcaccaccaccacc |
14087454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 132 - 175
Target Start/End: Complemental strand, 16309152 - 16309109
Alignment:
| Q |
132 |
cacaccctttcaccttcctcttcaaaccctagtgccgccgccgc |
175 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
16309152 |
cacactctttcaccttcctcttcaaaccctagtgccaccgccgc |
16309109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 132 - 171
Target Start/End: Complemental strand, 19976090 - 19976051
Alignment:
| Q |
132 |
cacaccctttcaccttcctcttcaaaccctagtgccgccg |
171 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
19976090 |
cacactctttcaccttcctcttcaaaccctagtgccgccg |
19976051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000004; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 132 - 167
Target Start/End: Complemental strand, 22902104 - 22902069
Alignment:
| Q |
132 |
cacaccctttcaccttcctcttcaaaccctagtgcc |
167 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||| |
|
|
| T |
22902104 |
cacactctttcaccttcctcttcaaaccctagtgcc |
22902069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 22902237 - 22902184
Alignment:
| Q |
1 |
cacccgcgagtacccgaacccgcccgtattggataagtaaaaacgacgtcgtttt |
55 |
Q |
| |
|
|||||||| |||||||||||||| |||||||||| || |||||||||||||||| |
|
|
| T |
22902237 |
cacccgcgggtacccgaacccgctcgtattggat-tgttaaaacgacgtcgtttt |
22902184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University