View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2585_low_9 (Length: 541)
Name: NF2585_low_9
Description: NF2585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2585_low_9 |
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| [»] scaffold0459 (1 HSPs) |
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| [»] scaffold0366 (1 HSPs) |
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Alignment Details
Target: scaffold0459 (Bit Score: 505; Significance: 0; HSPs: 1)
Name: scaffold0459
Description:
Target: scaffold0459; HSP #1
Raw Score: 505; E-Value: 0
Query Start/End: Original strand, 19 - 523
Target Start/End: Original strand, 5462 - 5966
Alignment:
| Q |
19 |
gaatggcaaagggaacaacattccagcaattggaatccatgtcactccaaaacaaaccaagaaatacacacattggaagagtgtaaacaatactatatgt |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5462 |
gaatggcaaagggaacaacattccagcaattggaatccatgtcactccaaaacaaaccaagaaatacacacattggaagagtgtaaacaatactatatgt |
5561 |
T |
|
| Q |
119 |
ttgaatggtactgactcaacaaaggaagcatgatcaccttccaacaacctgcaaggataggtttggctttagaaccagaaatcaatgacaaccgacactt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5562 |
ttgaatggtactgactcaacaaaggaagcatgatcaccttccaacaacctgcaaggataggtttggctttagaaccagaaatcaatgacaaccgacactt |
5661 |
T |
|
| Q |
219 |
cagaataaagatgtgtccggtatccgatgtgtgaatgtcgtgttcggtgtttgtgtctatttcaatgcttcatgtctattttgttaaaatggtgaaatca |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5662 |
cagaataaagatgtgtccggtatccgatgtgtgaatgtcgtgttcggtgtttgtgtctatttcaatgcttcatgtctattttgttaaaatggtgaaatca |
5761 |
T |
|
| Q |
319 |
aagtaactttcacttacttgtaccatctactaggtcttacaaaaagaagcaatatcctttcccaaaactgattccctggaagactatcaatagccatgta |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5762 |
aagtaactttcacttacttgtaccatctactaggtcttacaaaaagaagcaatatcctttcccaaaactgattccctggaagactatcaatagccatgta |
5861 |
T |
|
| Q |
419 |
agcaaagtatccccacaaaactgaagttggtatcatttttatggcaggcatagcaaacactgctactccaacaaagagtgattgtaaaaggttgctcact |
518 |
Q |
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| T |
5862 |
agcaaagtatccccacaaaactgaagttggtatcatttttatggcaggcatagcaaacactgctactccaacaaagagtgattgtaaaaggttgctcact |
5961 |
T |
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| Q |
519 |
ctttg |
523 |
Q |
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||||| |
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| T |
5962 |
ctttg |
5966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0366 (Bit Score: 505; Significance: 0; HSPs: 1)
Name: scaffold0366
Description:
Target: scaffold0366; HSP #1
Raw Score: 505; E-Value: 0
Query Start/End: Original strand, 19 - 523
Target Start/End: Original strand, 5462 - 5966
Alignment:
| Q |
19 |
gaatggcaaagggaacaacattccagcaattggaatccatgtcactccaaaacaaaccaagaaatacacacattggaagagtgtaaacaatactatatgt |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5462 |
gaatggcaaagggaacaacattccagcaattggaatccatgtcactccaaaacaaaccaagaaatacacacattggaagagtgtaaacaatactatatgt |
5561 |
T |
|
| Q |
119 |
ttgaatggtactgactcaacaaaggaagcatgatcaccttccaacaacctgcaaggataggtttggctttagaaccagaaatcaatgacaaccgacactt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5562 |
ttgaatggtactgactcaacaaaggaagcatgatcaccttccaacaacctgcaaggataggtttggctttagaaccagaaatcaatgacaaccgacactt |
5661 |
T |
|
| Q |
219 |
cagaataaagatgtgtccggtatccgatgtgtgaatgtcgtgttcggtgtttgtgtctatttcaatgcttcatgtctattttgttaaaatggtgaaatca |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5662 |
cagaataaagatgtgtccggtatccgatgtgtgaatgtcgtgttcggtgtttgtgtctatttcaatgcttcatgtctattttgttaaaatggtgaaatca |
5761 |
T |
|
| Q |
319 |
aagtaactttcacttacttgtaccatctactaggtcttacaaaaagaagcaatatcctttcccaaaactgattccctggaagactatcaatagccatgta |
418 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5762 |
aagtaactttcacttacttgtaccatctactaggtcttacaaaaagaagcaatatcctttcccaaaactgattccctggaagactatcaatagccatgta |
5861 |
T |
|
| Q |
419 |
agcaaagtatccccacaaaactgaagttggtatcatttttatggcaggcatagcaaacactgctactccaacaaagagtgattgtaaaaggttgctcact |
518 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5862 |
agcaaagtatccccacaaaactgaagttggtatcatttttatggcaggcatagcaaacactgctactccaacaaagagtgattgtaaaaggttgctcact |
5961 |
T |
|
| Q |
519 |
ctttg |
523 |
Q |
| |
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||||| |
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| T |
5962 |
ctttg |
5966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 357 - 457
Target Start/End: Original strand, 49706439 - 49706539
Alignment:
| Q |
357 |
acaaaaagaagcaatatcctttcccaaaactgattccctggaagactatcaatagccatgtaagcaaagtatccccacaaaactgaagttggtatcattt |
456 |
Q |
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||||| || ||||||||||||||||| ||||||||||| ||||||||||| || |||||||||||||| |||||||| ||||| || ||||||||| ||| |
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| T |
49706439 |
acaaagaggagcaatatcctttcccagaactgattccccggaagactatctattgccatgtaagcaaaatatccccataaaaccgaggttggtatccttt |
49706538 |
T |
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| Q |
457 |
t |
457 |
Q |
| |
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| |
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| T |
49706539 |
t |
49706539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 360 - 433
Target Start/End: Complemental strand, 2235423 - 2235350
Alignment:
| Q |
360 |
aaaagaagcaatatcctttcccaaaactgattccctggaagactatcaatagccatgtaagcaaagtatcccca |
433 |
Q |
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|||||||||||||||||||||||||| || |||||||| ||||||||||| ||||| |||||||| |||||||| |
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| T |
2235423 |
aaaagaagcaatatcctttcccaaaattggttccctgggagactatcaattgccatataagcaaaatatcccca |
2235350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 405 - 457
Target Start/End: Complemental strand, 12308833 - 12308781
Alignment:
| Q |
405 |
tcaatagccatgtaagcaaagtatccccacaaaactgaagttggtatcatttt |
457 |
Q |
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||||| |||||| ||||||||||||||||||| || || ||||| |||||||| |
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| T |
12308833 |
tcaatggccatgaaagcaaagtatccccacaatacagacgttggaatcatttt |
12308781 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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