View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2586_high_1 (Length: 607)

Name: NF2586_high_1
Description: NF2586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2586_high_1
NF2586_high_1
[»] chr8 (4 HSPs)
chr8 (368-597)||(35388018-35388247)
chr8 (118-271)||(35387686-35387839)
chr8 (176-256)||(38587837-38587917)
chr8 (368-428)||(35384172-35384232)
[»] chr4 (2 HSPs)
chr4 (176-277)||(30333137-30333238)
chr4 (176-271)||(33266565-33266660)
[»] chr1 (1 HSPs)
chr1 (169-271)||(7054626-7054727)
[»] chr7 (2 HSPs)
chr7 (170-268)||(39999023-39999121)
chr7 (172-271)||(32136083-32136182)
[»] chr2 (3 HSPs)
chr2 (170-256)||(41287932-41288018)
chr2 (171-255)||(4473594-4473678)
chr2 (176-271)||(31840273-31840368)
[»] chr5 (1 HSPs)
chr5 (188-271)||(13376794-13376879)
[»] chr3 (2 HSPs)
chr3 (169-224)||(10866906-10866961)
chr3 (231-271)||(30265717-30265757)


Alignment Details
Target: chr8 (Bit Score: 226; Significance: 1e-124; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 368 - 597
Target Start/End: Original strand, 35388018 - 35388247
Alignment:
Q  368 ggtactttaagttgtgtaattgcagatacacccttcacatttgaacatgcatttcttctcacgactaaccatacaaaaataattataatttttattttat 467  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35388018 ggtactttaagttgtgtaattgctgatacacccttcacatttgaacatgcatttcttctcacgactaaccatacaaaaataattataatttttattttat 35388117  T
Q  468 aatgccgatgattaacatacataaccaaaatgtatacatattcggagaaagtgaaaatcaataactcaaaatgtgatgcatgccttcgatctttcattca 567  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35388118 aatgccgatgattaacatacataaccaaaatgtatacatattcggagaaagtgaaaatcaataactcaaaatgtgatgcatgccttcgatctttcattca 35388217  T
Q  568 tgttggaagatttgttcattgtgacctatg 597  Q
    ||||||||||||||||||||||||||||||    
T  35388218 tgttggaagatttgttcattgtgacctatg 35388247  T

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Target: chr8; HSP #2
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 118 - 271
Target Start/End: Original strand, 35387686 - 35387839
Alignment:
Q  118 ttgggctgcacaattcggttgtactctatgactgatacctgtggctcatgccttagaacatctacaatgctagaacaaaatttatgttcttcaaacattt 217  Q
    ||||||||||||||||||||||||| | |||| ||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  35387686 ttgggctgcacaattcggttgtactatttgacagatacttgtggctcatgccttacaacatctacaatgctagaacaaaatttatgttcttcaaacattt 35387785  T
Q  218 tgttgggtccattattgccacatggggattcaagaacaatcatgtagttttact 271  Q
    |||||||||||| |||| ||| || |||||||||||||| ||||||||||||||    
T  35387786 tgttgggtccatcattgtcacgtgcggattcaagaacaaccatgtagttttact 35387839  T

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Target: chr8; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 176 - 256
Target Start/End: Complemental strand, 38587917 - 38587837
Alignment:
Q  176 catctacaatgctagaacaaaatttatgttcttcaaacattttgttgggtccattattgccacatggggattcaagaacaa 256  Q
    ||||||||||||||||| || ||||||||||||||| ||||||| ||||||||| |||||||| |||||||||||||||||    
T  38587917 catctacaatgctagaagaagatttatgttcttcaagcattttggtgggtccatcattgccacttggggattcaagaacaa 38587837  T

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Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 368 - 428
Target Start/End: Original strand, 35384172 - 35384232
Alignment:
Q  368 ggtactttaagttgtgtaattgcagatacacccttcacatttgaacatgcatttcttctca 428  Q
    ||||| |||| ||||||||||||| |||||||||| |||||| |||||||| |||||||||    
T  35384172 ggtacgttaaattgtgtaattgcatatacaccctttacattttaacatgcacttcttctca 35384232  T

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Target: chr4 (Bit Score: 62; Significance: 2e-26; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 176 - 277
Target Start/End: Complemental strand, 30333238 - 30333137
Alignment:
Q  176 catctacaatgctagaacaaaatttatgttcttcaaacattttgttgggtccattattgccacatggggattcaagaacaatcatgtagttttacttgaa 275  Q
    |||||| |||||||||| |||  ||||||||||||| ||||||| ||||||||| ||||||||||| |||||||||||||||||| |||||||||| |||    
T  30333238 catctaaaatgctagaaaaaagcttatgttcttcaagcattttggtgggtccatcattgccacatgaggattcaagaacaatcatatagttttactcgaa 30333139  T
Q  276 tg 277  Q
    ||    
T  30333138 tg 30333137  T

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Target: chr4; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 176 - 271
Target Start/End: Complemental strand, 33266660 - 33266565
Alignment:
Q  176 catctacaatgctagaacaaaatttatgttcttcaaacattttgttgggtccattattgccacatggggattcaagaacaatcatgtagttttact 271  Q
    ||||||||| |||||||||||||||||||| ||||| ||||||| ||||||||| |||| || ||||| | ||||||||||  |||||||||||||    
T  33266660 catctacaaagctagaacaaaatttatgtttttcaagcattttggtgggtccatcattgtcatatgggaagtcaagaacaaatatgtagttttact 33266565  T

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Target: chr1 (Bit Score: 59; Significance: 1e-24; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 169 - 271
Target Start/End: Complemental strand, 7054727 - 7054626
Alignment:
Q  169 cttagaacatctacaatgctagaacaaaatttatgttcttcaaacattttgttgggtccattattgccacatggggattcaagaacaatcatgtagtttt 268  Q
    |||||| |||||||||||||||||||| |||| |||||||||| ||||  || |||||||| ||||||||||| |||||||||||||| |||||||||||    
T  7054727 cttagagcatctacaatgctagaacaagatttgtgttcttcaagcattgggt-gggtccatcattgccacatgtggattcaagaacaaccatgtagtttt 7054629  T
Q  269 act 271  Q
    |||    
T  7054628 act 7054626  T

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Target: chr7 (Bit Score: 55; Significance: 3e-22; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 170 - 268
Target Start/End: Complemental strand, 39999121 - 39999023
Alignment:
Q  170 ttagaacatctacaatgctagaacaaaatttatgttcttcaaacattttgttgggtccattattgccacatggggattcaagaacaatcatgtagtttt 268  Q
    ||||| |||||||||||||||||||| |||| | |||||||| ||||||| ||||| ||| ||| |||||||| ||||||||||||||||| |||||||    
T  39999121 ttagagcatctacaatgctagaacaagatttgtattcttcaagcattttggtgggttcatcattaccacatggagattcaagaacaatcatatagtttt 39999023  T

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Target: chr7; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 172 - 271
Target Start/End: Complemental strand, 32136182 - 32136083
Alignment:
Q  172 agaacatctacaatgctagaacaaaatttatgttcttcaaacattttgttgggtccattattgccacatggggattcaagaacaatcatgtagttttact 271  Q
    ||||||||||||||   ||||||||||||||||||||||| ||||||| ||||||||  |||| || ||| |||||||||||||| |||||| |||||||    
T  32136182 agaacatctacaatatcagaacaaaatttatgttcttcaagcattttggtgggtccaccattgtcatatgaggattcaagaacaaccatgtaattttact 32136083  T

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Target: chr2 (Bit Score: 51; Significance: 6e-20; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 170 - 256
Target Start/End: Original strand, 41287932 - 41288018
Alignment:
Q  170 ttagaacatctacaatgctagaacaaaatttatgttcttcaaacattttgttgggtccattattgccacatggggattcaagaacaa 256  Q
    ||||| |||||||| ||||| ||||| ||||||||||||||| ||||||| ||||||||| ||||||||||| ||||| ||||||||    
T  41287932 ttagagcatctacactgctaaaacaagatttatgttcttcaagcattttggtgggtccatcattgccacatgaggatttaagaacaa 41288018  T

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Target: chr2; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 171 - 255
Target Start/End: Complemental strand, 4473678 - 4473594
Alignment:
Q  171 tagaacatctacaatgctagaacaaaatttatgttcttcaaacattttgttgggtccattattgccacatggggattcaagaaca 255  Q
    |||| |||||||||||||| || || |||||||||||| || ||||||| ||||||||| ||||||| |||||||||||||||||    
T  4473678 tagagcatctacaatgctaaaataagatttatgttctttaagcattttgatgggtccatcattgccatatggggattcaagaaca 4473594  T

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Target: chr2; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 176 - 271
Target Start/End: Original strand, 31840273 - 31840368
Alignment:
Q  176 catctacaatgctagaacaaaatttatgttcttcaaacattttgttgggtccattattgccacatggggattcaagaacaatcatgtagttttact 271  Q
    |||||||||||||||||||| |||||||| |||||||||||||  ||| ||||| ||||   ||||  ||||||||||||| ||||||||||||||    
T  31840273 catctacaatgctagaacaagatttatgtccttcaaacattttagtggatccatcattgatccatgaagattcaagaacaaccatgtagttttact 31840368  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 188 - 271
Target Start/End: Original strand, 13376794 - 13376879
Alignment:
Q  188 tagaacaaaatttatgttcttcaaacattttgttgggtccattattgccacatggg--gattcaagaacaatcatgtagttttact 271  Q
    |||||||||||||||||| |||||| |||||| ||||||||| |||| | ||||||   |||||||||||| ||||||||||||||    
T  13376794 tagaacaaaatttatgtttttcaaatattttggtgggtccatcattgtctcatgggatcattcaagaacaaccatgtagttttact 13376879  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000006; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 169 - 224
Target Start/End: Complemental strand, 10866961 - 10866906
Alignment:
Q  169 cttagaacatctacaatgctagaacaaaatttatgttcttcaaacattttgttggg 224  Q
    |||||| |||||||||||||||||||| |||||||||||| || ||||||| ||||    
T  10866961 cttagagcatctacaatgctagaacaatatttatgttcttgaagcattttggtggg 10866906  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 231 - 271
Target Start/End: Complemental strand, 30265757 - 30265717
Alignment:
Q  231 attgccacatggggattcaagaacaatcatgtagttttact 271  Q
    |||||||||||| ||||||||||||| ||||||||||||||    
T  30265757 attgccacatggcgattcaagaacaaccatgtagttttact 30265717  T

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