View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2586_high_12 (Length: 283)
Name: NF2586_high_12
Description: NF2586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2586_high_12 |
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Alignment Details
Target: chr1 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 23302215 - 23302000
Alignment:
| Q |
1 |
caatatccgcttctcatcttccttagaaattttgcggtaagatgcaaggaagtgcacttgatctgaaggtagtaaattatgattgtggctggatataaat |
100 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | ||||||||| |
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| T |
23302215 |
caatatccgcttctcttcttccttagaaattttgcggtaagatgcaaggaagtgcacttgatctgaaggtagtaaatcatgattgtggttagatataaat |
23302116 |
T |
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| Q |
101 |
tcaataacctgccactcttctggaaaaatctcaaaggatttcttcaatttgattgtcatgcttgccttgcatccacatctccaagattgtctatttcgtt |
200 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| |
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| T |
23302115 |
tcaataacctgccactcttctggaaaaatctctaaggatttcttcaatttgattgtcatgcttgccttgcatccacatctcgaagatggtctatttcgtt |
23302016 |
T |
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| Q |
201 |
gttctttagacggatc |
216 |
Q |
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|||||||||||||||| |
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| T |
23302015 |
gttctttagacggatc |
23302000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 16150096 - 16150311
Alignment:
| Q |
1 |
caatatccgcttctcatcttccttagaaattttgcggtaagatgcaaggaagtgcacttgatctgaaggtagtaaattatgattgtggctggatataaat |
100 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | ||||||||| |
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| T |
16150096 |
caatatccgcttctcttcttccttagaaattttgcggtaagatgcaaggaagtgcacttgatctgaaggtagtaaatcatgattgtggttagatataaat |
16150195 |
T |
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| Q |
101 |
tcaataacctgccactcttctggaaaaatctcaaaggatttcttcaatttgattgtcatgcttgccttgcatccacatctccaagattgtctatttcgtt |
200 |
Q |
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|||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| |
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| T |
16150196 |
tcaaaaacctgccactcttctggaaaaatctcgaaggatttcttcaatttgattgtcatgcttgccttgcatccacatctcgaagatggtctatttcgtt |
16150295 |
T |
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| Q |
201 |
gttctttagacggatc |
216 |
Q |
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|||||||||||||||| |
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| T |
16150296 |
gttctttagacggatc |
16150311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 274
Target Start/End: Original strand, 4652696 - 4652958
Alignment:
| Q |
1 |
caatatccgcttctcatcttccttagaaattttgcggtaagatgcaaggaagtgcacttgatctgaaggtagtaaattatgattgtggctggatataaat |
100 |
Q |
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|||||| |||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4652696 |
caatattcgcttcccgtcttccttagaaattttgcggtaagatgcaaggaagtgcacttgatctgaaggtagtaaattatgattgtggctggatataaat |
4652795 |
T |
|
| Q |
101 |
tcaataacctgccactcttctggaaaaatctcaaaggatttcttcaatttgattgtcatgcttgccttgcatccacatctccaagattgtctatttcgtt |
200 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
4652796 |
tcaatatcctgccactcttctggaaaaatctcaaaggatttcttcaatttgattgtcatgcttgccttgca--------tccaagattgtctatttcgtt |
4652887 |
T |
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| Q |
201 |
gttctttagacggatcataannnnnnnnnnnatcaaaaaatcctccatggtgacaaaacaaatctctcctatgc |
274 |
Q |
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|||||||||||||||||| | |||| ||||||||||| |||||||||||||||||||||||||| |
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| T |
4652888 |
gttctttagacggatcatga---ttttttttatcagaaaatcctccacggtgacaaaacaaatctctcctatgc |
4652958 |
T |
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