View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2586_high_14 (Length: 259)
Name: NF2586_high_14
Description: NF2586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2586_high_14 |
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Alignment Details
Target: chr6 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 17 - 254
Target Start/End: Complemental strand, 4652669 - 4652432
Alignment:
| Q |
17 |
caaacaaataatgggtgttatggagcttgagaaaaatgtaaaacatggagatcttcgatttcttcgaaaagatattcacaatttctttaataagattcat |
116 |
Q |
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| T |
4652669 |
caaacaaataatgcgtgttatggagcttgagaaaaacgtaaaacatggagatcttcgatttcttcgaaaagatattcataatttctttaataagattcat |
4652570 |
T |
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| Q |
117 |
caagataacatgaatggtgatgttaatgatcttttacgactttgtaagttttccaaggatgaaaactcatgcttccaatttgcattcactgttgataaag |
216 |
Q |
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| T |
4652569 |
caagataacatgaatggtgatgttaatgatcttttacaactttgtaagttttccaaggatgaaaactcatgcttccaatttgtatttactgttgataaag |
4652470 |
T |
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| Q |
217 |
aaaaaagactagaaaatatattttggtctccacatcat |
254 |
Q |
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| T |
4652469 |
aaaaaagactagaaaatatattttggtctccacatcat |
4652432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 21 - 254
Target Start/End: Complemental strand, 16150065 - 16149832
Alignment:
| Q |
21 |
caaataatgggtgttatggagcttgagaaaaatgtaaaacatggagatcttcgatttcttcgaaaagatattcacaatttctttaataagattcatcaag |
120 |
Q |
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| T |
16150065 |
caaataatgcgtgttatggagcttgagaaaaatgtaaaacatggagatcttcgatttcttgagaaagatattcataatttctttaataagattcatcaag |
16149966 |
T |
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| Q |
121 |
ataacatgaatggtgatgttaatgatcttttacgactttgtaagttttccaaggatgaaaactcatgcttccaatttgcattcactgttgataaagaaaa |
220 |
Q |
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| T |
16149965 |
ataacatgaatggtgatgctaatgatcttttacaactttgtaagttatccaaggaagaaaactcatgcttccaatttgaatttacggttgataaagaaaa |
16149866 |
T |
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| Q |
221 |
aagactagaaaatatattttggtctccacatcat |
254 |
Q |
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| T |
16149865 |
aagactagaaaatatattttggtctccacctcat |
16149832 |
T |
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