View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2586_high_16 (Length: 251)

Name: NF2586_high_16
Description: NF2586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2586_high_16
NF2586_high_16
[»] chr4 (3 HSPs)
chr4 (7-118)||(51389502-51389613)
chr4 (123-185)||(51389164-51389226)
chr4 (211-248)||(14593827-14593864)
[»] chr5 (4 HSPs)
chr5 (123-181)||(42831259-42831317)
chr5 (212-249)||(26660445-26660482)
chr5 (212-249)||(26932037-26932074)
chr5 (212-248)||(36548415-36548451)
[»] chr1 (4 HSPs)
chr1 (123-185)||(49275785-49275847)
chr1 (124-181)||(49276578-49276635)
chr1 (212-248)||(11097919-11097955)
chr1 (212-248)||(35846354-35846390)
[»] chr3 (3 HSPs)
chr3 (123-181)||(40024975-40025033)
chr3 (123-178)||(40025957-40026012)
chr3 (211-248)||(2482709-2482746)
[»] chr2 (2 HSPs)
chr2 (123-181)||(41405917-41405975)
chr2 (212-248)||(39449267-39449303)
[»] chr8 (2 HSPs)
chr8 (134-172)||(32175904-32175942)
chr8 (212-249)||(11223893-11223930)
[»] chr7 (1 HSPs)
chr7 (210-248)||(42663082-42663120)
[»] scaffold0005 (1 HSPs)
scaffold0005 (211-248)||(223514-223551)


Alignment Details
Target: chr4 (Bit Score: 104; Significance: 6e-52; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 7 - 118
Target Start/End: Complemental strand, 51389613 - 51389502
Alignment:
Q  7 gagagatgaaatagtgattcacgccttggccgttacgaaaggtatatcggtgtgggcttttgcggaaagaaagaaacttctcgatccttcttctattttc 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||    
T  51389613 gagagatgaaatagtgattcacgccttggccgttacgaaaggtatatcggtgtgggcttttgcggaaagcaagaaacttctcgatccttcttctgttttc 51389514  T
Q  107 tgctattttcac 118  Q
    ||||||||||||    
T  51389513 tgctattttcac 51389502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 123 - 185
Target Start/End: Complemental strand, 51389226 - 51389164
Alignment:
Q  123 caaaaataccatactttttagatttttctggtacgagacaactccaagttatggggtactttc 185  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||    
T  51389226 caaaaataccatactttttagatttttctggtacgagacaactcaaagttatggggtattttc 51389164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 211 - 248
Target Start/End: Original strand, 14593827 - 14593864
Alignment:
Q  211 tgagaaatgatatttgtgtatccattttgtgacaactt 248  Q
    ||||||||||||||||  ||||||||||||||||||||    
T  14593827 tgagaaatgatatttgaatatccattttgtgacaactt 14593864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 6e-18; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 123 - 181
Target Start/End: Original strand, 42831259 - 42831317
Alignment:
Q  123 caaaaataccatactttttagatttttctggtacgagacaactccaagttatggggtac 181  Q
    |||||||||||||||||||||||||||||||||| | ||||||||||||| ||||||||    
T  42831259 caaaaataccatactttttagatttttctggtaccaaacaactccaagttgtggggtac 42831317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 212 - 249
Target Start/End: Complemental strand, 26660482 - 26660445
Alignment:
Q  212 gagaaatgatatttgtgtatccattttgtgacaacttc 249  Q
    ||||||||||||||||  ||||||||||||||||||||    
T  26660482 gagaaatgatatttgtacatccattttgtgacaacttc 26660445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 212 - 249
Target Start/End: Complemental strand, 26932074 - 26932037
Alignment:
Q  212 gagaaatgatatttgtgtatccattttgtgacaacttc 249  Q
    ||||||||||||||||  ||||||||||||||||||||    
T  26932074 gagaaatgatatttgtacatccattttgtgacaacttc 26932037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 212 - 248
Target Start/End: Complemental strand, 36548451 - 36548415
Alignment:
Q  212 gagaaatgatatttgtgtatccattttgtgacaactt 248  Q
    |||||||||||||||| || |||||||||||||||||    
T  36548451 gagaaatgatatttgtataaccattttgtgacaactt 36548415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 6e-18; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 123 - 185
Target Start/End: Original strand, 49275785 - 49275847
Alignment:
Q  123 caaaaataccatactttttagatttttctggtacgagacaactccaagttatggggtactttc 185  Q
    ||||||||||||||||||||||||||||||| || | ||||||||||||| ||||||||||||    
T  49275785 caaaaataccatactttttagatttttctggcaccacacaactccaagttgtggggtactttc 49275847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 124 - 181
Target Start/End: Complemental strand, 49276635 - 49276578
Alignment:
Q  124 aaaaataccatactttttagatttttctggtacgagacaactccaagttatggggtac 181  Q
    ||||||||| |||||||||||||||||| |||| | ||||||||||||| ||||||||    
T  49276635 aaaaataccctactttttagatttttcttgtaccacacaactccaagttgtggggtac 49276578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 212 - 248
Target Start/End: Complemental strand, 11097955 - 11097919
Alignment:
Q  212 gagaaatgatatttgtgtatccattttgtgacaactt 248  Q
    ||||||||||||||||  |||||||||||||||||||    
T  11097955 gagaaatgatatttgtacatccattttgtgacaactt 11097919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 212 - 248
Target Start/End: Complemental strand, 35846390 - 35846354
Alignment:
Q  212 gagaaatgatatttgtgtatccattttgtgacaactt 248  Q
    |||||||||||||||| |||||| |||||||||||||    
T  35846390 gagaaatgatatttgtatatccactttgtgacaactt 35846354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 123 - 181
Target Start/End: Original strand, 40024975 - 40025033
Alignment:
Q  123 caaaaataccatactttttagatttttctggtacgagacaactccaagttatggggtac 181  Q
    |||||||||| ||||||| ||||||||||||||| | |||||||||||||  |||||||    
T  40024975 caaaaataccttacttttaagatttttctggtaccacacaactccaagttgcggggtac 40025033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 123 - 178
Target Start/End: Complemental strand, 40026012 - 40025957
Alignment:
Q  123 caaaaataccatactttttagatttttctggtacgagacaactccaagttatgggg 178  Q
    |||||||||| ||||||||||||||||||| ||  | ||||||||||||| |||||    
T  40026012 caaaaataccctactttttagatttttctgctaacacacaactccaagttgtgggg 40025957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 211 - 248
Target Start/End: Complemental strand, 2482746 - 2482709
Alignment:
Q  211 tgagaaatgatatttgtgtatccattttgtgacaactt 248  Q
    |||||||||||||||||  |||||||||||||||||||    
T  2482746 tgagaaatgatatttgtacatccattttgtgacaactt 2482709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 123 - 181
Target Start/End: Original strand, 41405917 - 41405975
Alignment:
Q  123 caaaaataccatactttttagatttttctggtacgagacaactccaagttatggggtac 181  Q
    |||||||||| ||||  ||||||||||||||||| | |||||| |||||||||||||||    
T  41405917 caaaaataccctactggttagatttttctggtaccacacaacttcaagttatggggtac 41405975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 212 - 248
Target Start/End: Original strand, 39449267 - 39449303
Alignment:
Q  212 gagaaatgatatttgtgtatccattttgtgacaactt 248  Q
    |||||||||||||||  ||||||||||||||||||||    
T  39449267 gagaaatgatatttgaatatccattttgtgacaactt 39449303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 172
Target Start/End: Original strand, 32175904 - 32175942
Alignment:
Q  134 tactttttagatttttctggtacgagacaactccaagtt 172  Q
    ||||||||||||||||||||||| | |||||||||||||    
T  32175904 tactttttagatttttctggtaccacacaactccaagtt 32175942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 212 - 249
Target Start/End: Complemental strand, 11223930 - 11223893
Alignment:
Q  212 gagaaatgatatttgtgtatccattttgtgacaacttc 249  Q
    ||||||||||||||||  ||||||||||||||||||||    
T  11223930 gagaaatgatatttgtacatccattttgtgacaacttc 11223893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 210 - 248
Target Start/End: Original strand, 42663082 - 42663120
Alignment:
Q  210 atgagaaatgatatttgtgtatccattttgtgacaactt 248  Q
    ||||||||||||||||||  |||||||||||||||||||    
T  42663082 atgagaaatgatatttgtacatccattttgtgacaactt 42663120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 211 - 248
Target Start/End: Complemental strand, 223551 - 223514
Alignment:
Q  211 tgagaaatgatatttgtgtatccattttgtgacaactt 248  Q
    ||||||||||||||||  ||||||||||||||||||||    
T  223551 tgagaaatgatatttgaatatccattttgtgacaactt 223514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University