View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2586_high_24 (Length: 236)

Name: NF2586_high_24
Description: NF2586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2586_high_24
NF2586_high_24
[»] chr3 (5 HSPs)
chr3 (16-236)||(487081-487301)
chr3 (40-225)||(573890-574074)
chr3 (43-225)||(554094-554277)
chr3 (178-231)||(487687-487740)
chr3 (178-231)||(574401-574454)
[»] chr1 (2 HSPs)
chr1 (201-236)||(33857324-33857359)
chr1 (201-236)||(33923564-33923599)
[»] chr4 (1 HSPs)
chr4 (200-236)||(55771092-55771128)


Alignment Details
Target: chr3 (Bit Score: 213; Significance: 1e-117; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 16 - 236
Target Start/End: Original strand, 487081 - 487301
Alignment:
Q  16 gttgaaactaggccaacaactcatataggagataaataaatggcatatgagtatgagctggaagggaattatgctgagttggaaaactataaaagaggga 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||    
T  487081 gttgaaactaggccaacaactcatataggagataaataaatggcatatgagtatgagctggatgggaagtatgctgagttggaaaactataaaagaggga 487180  T
Q  116 atccaaaggatgagactaacaacgataatttctaatttaattccaaagtttcagaggaaactatcaagacagagtttatcagtaaacattagtttcccat 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  487181 atccaaaggatgagactaacaacgataatttctaatttaattccaaagtttcagaggaaactatcaagacagagtttatcagtaaacattagtttcccat 487280  T
Q  216 ggacataaaatgcatgaaccc 236  Q
    |||||||||||||||||||||    
T  487281 ggacataaaatgcatgaaccc 487301  T

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Target: chr3; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 40 - 225
Target Start/End: Original strand, 573890 - 574074
Alignment:
Q  40 ataggagataaataaatggcatatgagtatgagctggaagggaattatgctgagttggaaaactataaaagagggaatccaaaggatgagactaacaacg 139  Q
    ||||||||||||||||||||||  ||||||||| |||| | ||| |||||||||||||||||| |||||||||||||||| ||||||||||||||| | |    
T  573890 ataggagataaataaatggcat--gagtatgagttggatgagaagtatgctgagttggaaaacaataaaagagggaatcctaaggatgagactaactatg 573987  T
Q  140 ataatttcta-atttaattccaaagtttcagaggaaactatcaagacagagtttatcagtaaacattagtttcccatggacataaaa 225  Q
    ||||||||||  ||||||| |||||||||| ||||||||||||||||||   ||||||| |||||||||||||||||||||||||||    
T  573988 ataatttctacttttaattgcaaagtttcacaggaaactatcaagacagttcttatcaggaaacattagtttcccatggacataaaa 574074  T

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Target: chr3; HSP #3
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 43 - 225
Target Start/End: Original strand, 554094 - 554277
Alignment:
Q  43 ggagataaataaatggcatatgagtatgagctggaagggaattatgctgagttggaaaactataaaagagggaatccaaaggatgagactaacaacgata 142  Q
    |||||||||||||||||||||||||||||  |||| | ||| |||||||||||| ||||| |||| ||| ||||||| ||||||||||||||| | ||||    
T  554094 ggagataaataaatggcatatgagtatgaattggatgagaagtatgctgagttgaaaaacaataatagaaggaatcctaaggatgagactaactatgata 554193  T
Q  143 atttcta-atttaattccaaagtttcagaggaaactatcaagacagagtttatcagtaaacattagtttcccatggacataaaa 225  Q
    |||||||  ||||||| |||||||||| ||||||||||||||||||   ||||||| |||||||||||||||||||||||||||    
T  554194 atttctacttttaattgcaaagtttcacaggaaactatcaagacagttcttatcaggaaacattagtttcccatggacataaaa 554277  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 178 - 231
Target Start/End: Original strand, 487687 - 487740
Alignment:
Q  178 atcaagacagagtttatcagtaaacattagtttcccatggacataaaatgcatg 231  Q
    ||||||||||  ||||  ||| ||||||||||||| ||||||||||||||||||    
T  487687 atcaagacagtttttacaagtgaacattagtttcctatggacataaaatgcatg 487740  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 178 - 231
Target Start/End: Original strand, 574401 - 574454
Alignment:
Q  178 atcaagacagagtttatcagtaaacattagtttcccatggacataaaatgcatg 231  Q
    ||||||||||  ||||  ||| ||||||||||||| ||||||||||||||||||    
T  574401 atcaagacagtttttacaagtgaacattagtttcctatggacataaaatgcatg 574454  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 201 - 236
Target Start/End: Complemental strand, 33857359 - 33857324
Alignment:
Q  201 acattagtttcccatggacataaaatgcatgaaccc 236  Q
    |||||||||||||| |||||||||||||||||||||    
T  33857359 acattagtttcccaaggacataaaatgcatgaaccc 33857324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 201 - 236
Target Start/End: Original strand, 33923564 - 33923599
Alignment:
Q  201 acattagtttcccatggacataaaatgcatgaaccc 236  Q
    |||||||||||||| |||||||||||||||||||||    
T  33923564 acattagtttcccaaggacataaaatgcatgaaccc 33923599  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 200 - 236
Target Start/End: Complemental strand, 55771128 - 55771092
Alignment:
Q  200 aacattagtttcccatggacataaaatgcatgaaccc 236  Q
    ||||||||||||||| ||||| |||||||||||||||    
T  55771128 aacattagtttcccagggacaaaaaatgcatgaaccc 55771092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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