View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2586_high_5 (Length: 362)
Name: NF2586_high_5
Description: NF2586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2586_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 1 - 344
Target Start/End: Complemental strand, 3152596 - 3152248
Alignment:
| Q |
1 |
caagtaagaagcatgaaaaacaaaaccatattccacaaagttcacaaattataggaaatcactagtatcaagcttccagactccagagctaacataattg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3152596 |
caagtaagaagcatgaaaaacaaaaccatattccacaaagttcacaaattataggaaatcactagtatcaagcttccagactccagagctaacataattg |
3152497 |
T |
|
| Q |
101 |
tgcatccgcaataccattaataaggtatgacttagcctaattaattcagtagtaatcatggaaacataaccaaactccatagagtt-----gtcaatgaa |
195 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
3152496 |
tgcatccgcaataccattaataaggtatgacttagcctaattaattcagtagtaatcatggaaacataaccaaactccatagagttgtcatgtcaatgaa |
3152397 |
T |
|
| Q |
196 |
ataaattcaattactctcacactcctctcgtttattatgtgtgtttttatttgttttcttgtcttggtacctccatatgtttgttccgtcagctgcagag |
295 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3152396 |
ataaattcaattactctcacactcctctcgtttattatgtgtgtttttatttgttttcttgtcttggtacctccatatgtttgttccgtcagctgcagag |
3152297 |
T |
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| Q |
296 |
gtgtagggatgaggatactaaaaaacactatacatctctaaggactttg |
344 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
3152296 |
gtgtagggatgtggatactaaaaaacactatacatctctaaggactttg |
3152248 |
T |
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