View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2586_low_18 (Length: 250)
Name: NF2586_low_18
Description: NF2586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2586_low_18 |
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| [»] scaffold0137 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 127; Significance: 1e-65; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 174
Target Start/End: Original strand, 35287136 - 35287310
Alignment:
| Q |
1 |
gatatatcttcaatccaccgtcaaaaagtttcctacaaagatatacaagtgttacaagaaattaaccttaaaaaataatccttaatttctaatattgtca |
100 |
Q |
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| T |
35287136 |
gatatatcttcaatccaccatcaaagagtttcttacaaagatatataagtgttacaagaaattaaccttaaaaaataatccttaatttctaatattgtca |
35287235 |
T |
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| Q |
101 |
tgaatattttcccttgagattcaatgatttgactcaccaaggtg-ttagattgttttacaacccgagagtatact |
174 |
Q |
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| T |
35287236 |
tgaatattttcccttgagattcaatgatttgactcaacaaattgtttagattgtttcacaaccctagaggatact |
35287310 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 180 - 239
Target Start/End: Original strand, 35287396 - 35287455
Alignment:
| Q |
180 |
gtgatgaaaacgaaaatttataaaattggccgcaacccaacgccttgtgattggcttcat |
239 |
Q |
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| T |
35287396 |
gtgatgaaaacgaaaatttataaaattggccgcgacccaacgccttgtgattggcttcat |
35287455 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 64
Target Start/End: Original strand, 31026069 - 31026112
Alignment:
| Q |
21 |
tcaaaaagtttcctacaaagatatacaagtgttacaagaaatta |
64 |
Q |
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| T |
31026069 |
tcaaagagtttcctacaaagatatataagagttacaagaaatta |
31026112 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0137 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0137
Description:
Target: scaffold0137; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 38 - 91
Target Start/End: Complemental strand, 11091 - 11038
Alignment:
| Q |
38 |
aagatatacaagtgttacaagaaattaaccttaaaaaataatccttaatttcta |
91 |
Q |
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| T |
11091 |
aagagatacaagggttacaaaaaattaaccttaaacaataaaccctaatttcta |
11038 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 38 - 91
Target Start/End: Complemental strand, 3904235 - 3904182
Alignment:
| Q |
38 |
aagatatacaagtgttacaagaaattaaccttaaaaaataatccttaatttcta |
91 |
Q |
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| T |
3904235 |
aagagatacaagggttacaaaaaattaaccttaaacaataaaccctaatttcta |
3904182 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 27 - 88
Target Start/End: Complemental strand, 16605690 - 16605629
Alignment:
| Q |
27 |
agtttcctacaaagatatacaagtgttacaagaaattaaccttaaaaaataatccttaattt |
88 |
Q |
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| T |
16605690 |
agtttcttataaagatatacaagagttacaagaaattgtccttcaacaataaaccttaattt |
16605629 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 34 - 67
Target Start/End: Original strand, 88913 - 88946
Alignment:
| Q |
34 |
tacaaagatatacaagtgttacaagaaattaacc |
67 |
Q |
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| T |
88913 |
tacaaagatatacaagagttacaagaaattaacc |
88946 |
T |
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