View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2586_low_2 (Length: 597)
Name: NF2586_low_2
Description: NF2586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2586_low_2 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 577; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 577; E-Value: 0
Query Start/End: Original strand, 13 - 597
Target Start/End: Original strand, 16294857 - 16295441
Alignment:
| Q |
13 |
aatattgatcttgatagaggaagacgtttttctttttcaagacaacatgaagaacaatctacgtcatactcgatgacatcggatcatagaggattagaac |
112 |
Q |
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| T |
16294857 |
aatattgatcttgatagaggaagacgtttttctttttcaagacaacatgaagaacaatctacgtcatactcgatgacatcggatcatagaggattagaac |
16294956 |
T |
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| Q |
113 |
aatcggtgattaattcaattccggtgattcattacaaactagagaaagattatggtgaattaggaatctctagtgaatgtgctttttgtttgagtgagtt |
212 |
Q |
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| T |
16294957 |
aatcggtgattaattcaattccggtgattcattacaaactagagaaagattatggtgaattaggaatctctagtgaatgtgctttttgtttgagtgagtt |
16295056 |
T |
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| Q |
213 |
tcaagaagatgagaaactaagagttataccaaattgcaaccatttatttcacattgattgtgttgatatttggcttcaaaacaatgcaaattgtccactt |
312 |
Q |
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| T |
16295057 |
tcaagaagatgagaaactaagagttataccaaattgcaaccatttatttcacattgattgtgttgatatttggcttcaaaacaatgcaaattgtccactt |
16295156 |
T |
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| Q |
313 |
tgtagaaggaaagtttcaatgacaagagaaatccaagttgagcatgttgtaactccaagaccttcaccttattttgaaaggcaaaatgttgaaaacatca |
412 |
Q |
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| T |
16295157 |
tgtagaaggaaagtttcaatgacaagagaaatccaagttgagcatgttgtaactccaagaccttcaccttattttgaaaggcaaaatgttgaaaacatca |
16295256 |
T |
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| Q |
413 |
ttgatggttgtgaagattttgtttcaattgatttggataatattgaaaatgatcatgaaggtcaaaacttgcatgaaagaatagaagaaagaggtaaaga |
512 |
Q |
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| T |
16295257 |
ttgatggttgtgaagattttgtttcaattgatttggataatattgaaaatggtcatgaaggtcaaaacttgcatgaaagaatagaagaaagaggtaaaga |
16295356 |
T |
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| Q |
513 |
attagaggtaccaggagattcacacaagaaagcacttaagcttcaaaaagtgtctagcatggggaatgagtgtattaaagacaaa |
597 |
Q |
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| T |
16295357 |
attagaggtaccaagagattcacacaagaaagcacttaagcttcaaaaagtgtctagcatggggaatgagtgtattaaagacaaa |
16295441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 185 - 319
Target Start/End: Complemental strand, 32965377 - 32965243
Alignment:
| Q |
185 |
gtgaatgtgctttttgtttgagtgagtttcaagaagatgagaaactaagagttataccaaattgcaaccatttatttcacattgattgtgttgatatttg |
284 |
Q |
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| T |
32965377 |
gtgaatgtgctgtttgtttgaatgagtttcaacaagatgaaaaacttaggattataccaaattgtagccatgtttttcacattgattgcattgatgtttg |
32965278 |
T |
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| Q |
285 |
gcttcaaaacaatgcaaattgtccactttgtagaa |
319 |
Q |
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| T |
32965277 |
gttacaaaacaatgctaattgtccactttgtagaa |
32965243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 241 - 318
Target Start/End: Original strand, 30811494 - 30811571
Alignment:
| Q |
241 |
ccaaattgcaaccatttatttcacattgattgtgttgatatttggcttcaaaacaatgcaaattgtccactttgtaga |
318 |
Q |
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| T |
30811494 |
ccaaattgcaaccatgcttttcacttggattgcattgatatttggcttcaaacaaattctaattgtcctctttgtaga |
30811571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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