View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2586_low_21 (Length: 246)
Name: NF2586_low_21
Description: NF2586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2586_low_21 |
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| [»] chr2 (12 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 224; Significance: 1e-123; HSPs: 12)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 19 - 246
Target Start/End: Original strand, 32182388 - 32182615
Alignment:
| Q |
19 |
ttgttagctcttctccaatttcagccggagtaacttgaacttctcctagaagcacttcaatcttttcgaagagttcatgttcagtaatgcaaaggtagtt |
118 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
32182388 |
ttgttagctcttctccaatttcagccggagtaacttgaacttctcctagaagcacttcaatcttttcaaagagttcatgttcagtaatgcaaaggtagtt |
32182487 |
T |
|
| Q |
119 |
aacaaccaattgcttaaaaccagaaaagttgcaatatgacaagtgaatttgcttgtccattctaccaggccttagcagagcaggatcaagcctttctttg |
218 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32182488 |
aacaaccaattgcttaaaaccagaaaagttgcaatatgacaagtgaatttgcttgtccattctaccaggccttagcagagcaggatcaagcctttctttg |
32182587 |
T |
|
| Q |
219 |
tgatttgttgtgaaaacaattatgtgtt |
246 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
32182588 |
tgatttgttgtgaaaacaattatgtgtt |
32182615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 19 - 246
Target Start/End: Original strand, 32157636 - 32157863
Alignment:
| Q |
19 |
ttgttagctcttctccaatttcagccggagtaacttgaacttctcctagaagcacttcaatcttttcgaagagttcatgttcagtaatgcaaaggtagtt |
118 |
Q |
| |
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|||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
32157636 |
ttgtgagctcttctccaatttcagcaggagtaacttgaacttctcctagaagcacttcaatcttttcaaagagttcatgttcagtaatgcaaaggtagtt |
32157735 |
T |
|
| Q |
119 |
aacaaccaattgcttaaaaccagaaaagttgcaatatgacaagtgaatttgcttgtccattctaccaggccttagcagagcaggatcaagcctttctttg |
218 |
Q |
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| |||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| |
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| T |
32157736 |
agtaaccaatttcttaaaagcagaaaagttgcaatatgacaagtgaatttgcttgtccattctaccaggccttaatagagcaggatcaagcctgtctttg |
32157835 |
T |
|
| Q |
219 |
tgatttgttgtgaaaacaattatgtgtt |
246 |
Q |
| |
|
|||||||||||||||||||||||||||| |
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|
| T |
32157836 |
tgatttgttgtgaaaacaattatgtgtt |
32157863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 19 - 246
Target Start/End: Complemental strand, 32212193 - 32211966
Alignment:
| Q |
19 |
ttgttagctcttctccaatttcagccggagtaacttgaacttctcctagaagcacttcaatcttttcgaagagttcatgttcagtaatgcaaaggtagtt |
118 |
Q |
| |
|
|||||||||||||| |||||||||| |||||||||||||||||||||||||||| |||||||||||| ||||||||||||| |||||||||||||||||| |
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|
| T |
32212193 |
ttgttagctcttctgcaatttcagcaggagtaacttgaacttctcctagaagcagttcaatcttttcaaagagttcatgttgagtaatgcaaaggtagtt |
32212094 |
T |
|
| Q |
119 |
aacaaccaattgcttaaaaccagaaaagttgcaatatgacaagtgaatttgcttgtccattctaccaggccttagcagagcaggatcaagcctttctttg |
218 |
Q |
| |
|
|| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
32212093 |
aataaccaattgcttaaaagcagaaaagttgcaatatgacaagtgaatttgcttgtccattctaccaggccttaatagagcaggatcaagcctttctttg |
32211994 |
T |
|
| Q |
219 |
tgatttgttgtgaaaacaattatgtgtt |
246 |
Q |
| |
|
||||||||||||| |||||||||||||| |
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|
| T |
32211993 |
tgatttgttgtgacaacaattatgtgtt |
32211966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 19 - 246
Target Start/End: Original strand, 32110342 - 32110569
Alignment:
| Q |
19 |
ttgttagctcttctccaatttcagccggagtaacttgaacttctcctagaagcacttcaatcttttcgaagagttcatgttcagtaatgcaaaggtagtt |
118 |
Q |
| |
|
|||||| | ||||| |||||||||| |||||||||||||||||||||| ||| |||||||||||||| |||||||||||||||||||| ||||||||||| |
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| T |
32110342 |
ttgttaacacttctgcaatttcagctggagtaacttgaacttctcctaaaagaacttcaatcttttcaaagagttcatgttcagtaatacaaaggtagtt |
32110441 |
T |
|
| Q |
119 |
aacaaccaattgcttaaaaccagaaaagttgcaatatgacaagtgaatttgcttgtccattctaccaggccttagcagagcaggatcaagcctttctttg |
218 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| |
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| T |
32110442 |
aacaaccaattgcttaaaagcagaaaagttgcaatatgacaagtgaatttgcttgtccattctaccaggccttagcagagcaggatcaagtctgtctttg |
32110541 |
T |
|
| Q |
219 |
tgatttgttgtgaaaacaattatgtgtt |
246 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
32110542 |
tgatttgttgtgaaaacaattatgtgtt |
32110569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 19 - 246
Target Start/End: Complemental strand, 32207118 - 32206891
Alignment:
| Q |
19 |
ttgttagctcttctccaatttcagccggagtaacttgaacttctcctagaagcacttcaatcttttcgaagagttcatgttcagtaatgcaaaggtagtt |
118 |
Q |
| |
|
|||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| |||||||||||||||||| |
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|
| T |
32207118 |
ttgttagctcttctgcaatttcagctggagtaacttgaacttctcctagaagcacttcaatctcttcaaagagttcatgttgagtaatgcaaaggtagtt |
32207019 |
T |
|
| Q |
119 |
aacaaccaattgcttaaaaccagaaaagttgcaatatgacaagtgaatttgcttgtccattctaccaggccttagcagagcaggatcaagcctttctttg |
218 |
Q |
| |
|
||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | |||||| |
|
|
| T |
32207018 |
aacaaccaattgcttcaaagcagaaaagttgcaatatgacaagtgaatttgcttgtccattctaccaggtcttagcagagcaggatcaagcttgtctttg |
32206919 |
T |
|
| Q |
219 |
tgatttgttgtgaaaacaattatgtgtt |
246 |
Q |
| |
|
|||||||||||||| ||||||||||||| |
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| T |
32206918 |
tgatttgttgtgaatacaattatgtgtt |
32206891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 19 - 246
Target Start/End: Original strand, 32156526 - 32156753
Alignment:
| Q |
19 |
ttgttagctcttctccaatttcagccggagtaacttgaacttctcctagaagcacttcaatcttttcgaagagttcatgttcagtaatgcaaaggtagtt |
118 |
Q |
| |
|
|||| ||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| |
|
|
| T |
32156526 |
ttgtaagctcttctgcaatttcagcaggagtaacttgaacttctcctagaagcacttcaatcttatcaaagagttcatgttcagtaatgcaaaggtagtt |
32156625 |
T |
|
| Q |
119 |
aacaaccaattgcttaaaaccagaaaagttgcaatatgacaagtgaatttgcttgtccattctaccaggccttagcagagcaggatcaagcctttctttg |
218 |
Q |
| |
|
|| || ||||| ||||||| |||||||||||||||||||||||||||| |||||||| |||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
32156626 |
aataatcaatttcttaaaagcagaaaagttgcaatatgacaagtgaatctgcttgtctattctaccaggccttaatagagcaggatcaagcctttctttg |
32156725 |
T |
|
| Q |
219 |
tgatttgttgtgaaaacaattatgtgtt |
246 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
32156726 |
tgatttgttgtgaaaacaattatgtgtt |
32156753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 21 - 246
Target Start/End: Original strand, 32174304 - 32174529
Alignment:
| Q |
21 |
gttagctcttctccaatttcagccggagtaacttgaacttctcctagaagcacttcaatcttttcgaagagttcatgttcagtaatgcaaaggtagttaa |
120 |
Q |
| |
|
|||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||| || ||||||||||||| ||||| ||| |||||||| | |
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|
| T |
32174304 |
gttagctcttctgcaatttcagctggagtaacttgaacttctcctagaagcacttcaatcttatcaaagagttcatgttgagtaacgcagaggtagttga |
32174403 |
T |
|
| Q |
121 |
caaccaattgcttaaaaccagaaaagttgcaatatgacaagtgaatttgcttgtccattctaccaggccttagcagagcaggatcaagcctttctttgtg |
220 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| |||||||| |
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|
| T |
32174404 |
caaccaattgcttaaaagcagaaaagttgcaatatgacaagtgaatttgtttgtccattctaccaggccttaacagagcaggatcaagcctgtctttgtg |
32174503 |
T |
|
| Q |
221 |
atttgttgtgaaaacaattatgtgtt |
246 |
Q |
| |
|
|||||||||||| ||||||||||||| |
|
|
| T |
32174504 |
atttgttgtgaatacaattatgtgtt |
32174529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 21 - 246
Target Start/End: Original strand, 32118608 - 32118833
Alignment:
| Q |
21 |
gttagctcttctccaatttcagccggagtaacttgaacttctcctagaagcacttcaatcttttcgaagagttcatgttcagtaatgcaaaggtagttaa |
120 |
Q |
| |
|
||||||||||| |||||||||| |||||||||||||||| |||||||||| |||||||||||| ||||||||||||||||||||||| |||||||||| |
|
|
| T |
32118608 |
gttagctcttcagcaatttcagctggagtaacttgaacttgtcctagaagctgttcaatcttttcaaagagttcatgttcagtaatgcagaggtagttaa |
32118707 |
T |
|
| Q |
121 |
caaccaattgcttaaaaccagaaaagttgcaatatgacaagtgaatttgcttgtccattctaccaggccttagcagagcaggatcaagcctttctttgtg |
220 |
Q |
| |
|
|||||||| ||||||| |||||||||||||||||||||||||||| |||||||||||||||||||| |||| ||||||||||||||||| |||||||| |
|
|
| T |
32118708 |
taaccaatttcttaaaagcagaaaagttgcaatatgacaagtgaatgtgcttgtccattctaccaggtcttaatagagcaggatcaagcctgtctttgtg |
32118807 |
T |
|
| Q |
221 |
atttgttgtgaaaacaattatgtgtt |
246 |
Q |
| |
|
|||||||||||| ||||||||||||| |
|
|
| T |
32118808 |
atttgttgtgaatacaattatgtgtt |
32118833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 19 - 205
Target Start/End: Original strand, 32152453 - 32152639
Alignment:
| Q |
19 |
ttgttagctcttctccaatttcagccggagtaacttgaacttctcctagaagcacttcaatcttttcgaagagttcatgttcagtaatgcaaaggtagtt |
118 |
Q |
| |
|
|||||||||||||| |||||||||| |||||||||||||||||||||| ||| |||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
32152453 |
ttgttagctcttctgcaatttcagcaggagtaacttgaacttctcctaaaagaacttcaatcttttcaaagagttcatgttcagtaatgcaaaggtagtt |
32152552 |
T |
|
| Q |
119 |
aacaaccaattgcttaaaaccagaaaagttgcaatatgacaagtgaatttgcttgtccattctaccaggccttagcagagcaggatc |
205 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| |||||||||||| ||||||| |||| |
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|
| T |
32152553 |
aacaaccaattgcttaaaagcagaaaagttgcaatatgacaaatgaatttgcttgtccattttaccaggccttaacagagcatgatc |
32152639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 19 - 177
Target Start/End: Complemental strand, 2821314 - 2821156
Alignment:
| Q |
19 |
ttgttagctcttctccaatttcagccggagtaacttgaacttctcctagaagcacttcaatcttttcgaagagttcatgttcagtaatgcaaaggtagtt |
118 |
Q |
| |
|
|||||||||||||| |||||||||| |||||||||||||||||||||||||| |||||||||||||| ||||||||||||| |||||||||||||||||| |
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|
| T |
2821314 |
ttgttagctcttctgcaatttcagctggagtaacttgaacttctcctagaagaacttcaatcttttcaaagagttcatgttgagtaatgcaaaggtagtt |
2821215 |
T |
|
| Q |
119 |
aacaaccaattgcttaaaaccagaaaagttgcaatatgacaagtgaatttgcttgtcca |
177 |
Q |
| |
|
|| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2821214 |
aataaccaattgcttaaaagcagaaaagttgcaatatgacaagtgaatttgcttgtcca |
2821156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 19 - 77
Target Start/End: Original strand, 32147697 - 32147755
Alignment:
| Q |
19 |
ttgttagctcttctccaatttcagccggagtaacttgaacttctcctagaagcacttca |
77 |
Q |
| |
|
|||||| ||||||| |||||||||| |||||||||||||||||||||| |||||||||| |
|
|
| T |
32147697 |
ttgttaactcttctgcaatttcagctggagtaacttgaacttctcctaaaagcacttca |
32147755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 19 - 65
Target Start/End: Original strand, 32153460 - 32153506
Alignment:
| Q |
19 |
ttgttagctcttctccaatttcagccggagtaacttgaacttctcct |
65 |
Q |
| |
|
|||||||||||||| |||||||||| |||||||||||||||| |||| |
|
|
| T |
32153460 |
ttgttagctcttctacaatttcagctggagtaacttgaacttgtcct |
32153506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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