View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2586_low_22 (Length: 242)
Name: NF2586_low_22
Description: NF2586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2586_low_22 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 184; Significance: 1e-99; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 19 - 242
Target Start/End: Complemental strand, 13774232 - 13774009
Alignment:
| Q |
19 |
actacatattgggttctaatccaaaacaaatgagttacatggtgggatatggatcaaattatccacaacaaattcatcatagaggagcttcaattgtatc |
118 |
Q |
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| T |
13774232 |
actacatattgggttctaatccaaaacagatgagttacatggtgggatatggatcaaattatccacaacaaattcatcatagaggagcttcaattatatc |
13774133 |
T |
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| Q |
119 |
aatcaaacaagatagttcaccagtaggatgcaaagatggttttgagaaatgtttcaacaaaaatgcaccaaaccctaatacattggatggagcaattgtg |
218 |
Q |
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| T |
13774132 |
aatcaagcaagatagttcaccattaggatgcaaagatggctttgaaaaatggttcaataaaaatgcaccaaaccctaatacattagaaggagcaattgtg |
13774033 |
T |
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| Q |
219 |
agtccagatcaaaatgatgatttt |
242 |
Q |
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| T |
13774032 |
agtccagatcaaaatgatgatttt |
13774009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 19 - 242
Target Start/End: Complemental strand, 13764384 - 13764161
Alignment:
| Q |
19 |
actacatattgggttctaatccaaaacaaatgagttacatggtgggatatggatcaaattatccacaacaaattcatcatagaggagcttcaattgtatc |
118 |
Q |
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||||||| |||||||||||||||| | | |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | ||||||||||| |
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| T |
13764384 |
actacattttgggttctaatccaagaaatatgagttacatggtgggatatggatcaaattatccaaaacaaattcatcatagaggatcatcaattgtatc |
13764285 |
T |
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| Q |
119 |
aatcaaacaagatagttcaccagtaggatgcaaagatggttttgagaaatgtttcaacaaaaatgcaccaaaccctaatacattggatggagcaattgtg |
218 |
Q |
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| T |
13764284 |
aatcaaagatgataatgcaccagttacatgtcaagatggtattcaaaaatggttcaataaaaatgcaccaaaccctaatatattagaaggagcagttgtg |
13764185 |
T |
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| Q |
219 |
agtccagatcaaaatgatgatttt |
242 |
Q |
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| T |
13764184 |
agttcagatcaaaatgatggtttt |
13764161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 104; Significance: 6e-52; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 48 - 175
Target Start/End: Complemental strand, 17264695 - 17264568
Alignment:
| Q |
48 |
atgagttacatggtgggatatggatcaaattatccacaacaaattcatcatagaggagcttcaattgtatcaatcaaacaagatagttcaccagtaggat |
147 |
Q |
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| T |
17264695 |
atgagttacatggtgggatatggaacaagttatccacaacaaattcatcgtagaggagcttcaattgtatcaatcaaacaagatagttcaccagtaggat |
17264596 |
T |
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| Q |
148 |
gcaaagatggttttgagaaatgtttcaa |
175 |
Q |
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| T |
17264595 |
gcaaagatggctttgaaaaatggttcaa |
17264568 |
T |
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