View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2586_low_24 (Length: 241)
Name: NF2586_low_24
Description: NF2586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2586_low_24 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 18 - 241
Target Start/End: Original strand, 36448927 - 36449151
Alignment:
| Q |
18 |
gtaaaagctttattctgaatatgtaatgacgtgagttaatccatatcaaccatatatatcctaactaattttgtaatgtaattaaatttttatacatgaa |
117 |
Q |
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| T |
36448927 |
gtaaaagctttattctgaatatgtaatgacttgagttaatccatatcaaccatatatatcctaactaattttgtaatgtaattaaatttttatacatgaa |
36449026 |
T |
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| Q |
118 |
gaatcatagcaaatgagtcttcggtagaaaaatggccactctttgatctagtagtctagtggttgaagctcgcacattttaaatgaggagaaatagtagt |
217 |
Q |
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| T |
36449027 |
gaatcatagcaaatgagtcttcggtagaaaaatggccactctttggtctagtagtctagtggttgaagctcgcacattttaaatgaggagaaatgggagt |
36449126 |
T |
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| Q |
218 |
gt-tgaggttcaaaccttgactcct |
241 |
Q |
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| T |
36449127 |
gtctgaggttcaaacctcgactcct |
36449151 |
T |
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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 169 - 209
Target Start/End: Complemental strand, 40904648 - 40904608
Alignment:
| Q |
169 |
tagtctagtggttgaagctcgcacattttaaatgaggagaa |
209 |
Q |
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| T |
40904648 |
tagtctagtggctgaagctcgcacattttaaatgtggagaa |
40904608 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 209
Target Start/End: Original strand, 1817231 - 1817273
Alignment:
| Q |
167 |
agtagtctagtggttgaagctcgcacattttaaatgaggagaa |
209 |
Q |
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| T |
1817231 |
agtagtctagtggctgaagctcgcacatgttaaatgtggagaa |
1817273 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 209
Target Start/End: Original strand, 35851654 - 35851696
Alignment:
| Q |
167 |
agtagtctagtggttgaagctcgcacattttaaatgaggagaa |
209 |
Q |
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| T |
35851654 |
agtagtctagtggctggagctcgcacattttaaatgtggagaa |
35851696 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 168 - 209
Target Start/End: Complemental strand, 28715808 - 28715767
Alignment:
| Q |
168 |
gtagtctagtggttgaagctcgcacattttaaatgaggagaa |
209 |
Q |
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| T |
28715808 |
gtagtctagtggctgaagctcacacattttaaatgtggagaa |
28715767 |
T |
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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 212
Target Start/End: Original strand, 32860289 - 32860325
Alignment:
| Q |
176 |
gtggttgaagctcgcacattttaaatgaggagaaata |
212 |
Q |
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| T |
32860289 |
gtggttgaagctcgcacattttaaacgtggagaaata |
32860325 |
T |
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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 209
Target Start/End: Original strand, 39799983 - 39800023
Alignment:
| Q |
169 |
tagtctagtggttgaagctcgcacattttaaatgaggagaa |
209 |
Q |
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| T |
39799983 |
tagtctagtggctgaagctcacacattttaaatgtggagaa |
39800023 |
T |
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