View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2586_low_29 (Length: 235)
Name: NF2586_low_29
Description: NF2586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2586_low_29 |
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Alignment Details
Target: chr2 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 43186799 - 43187019
Alignment:
| Q |
1 |
ctttttctagtatttctgataataatgatttcaatcatgggaatattggatgttgacattagggttttgcatggaaattgatgggttgaaggagaaggct |
100 |
Q |
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| T |
43186799 |
ctttttctagtatttctgataataatgatttcaatcatgggaatattggatgttgacattagggttttgcatggaaattgatgggttgaaggagaaggct |
43186898 |
T |
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| Q |
101 |
atgtttgtaggaggacaattattcactgtatcaatcttgtttcctatattctccagttctttgacttgtgctctaagaaacttgaggtaattagcagctt |
200 |
Q |
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| T |
43186899 |
atgtttgtaggaggacaattattcactgtatcaatcttgtttcctatattctccagttctttgacttgtgctctaagaaacttgaggtaattagcagctt |
43186998 |
T |
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| Q |
201 |
catcaagcattgatgcagtgt |
221 |
Q |
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| T |
43186999 |
catcaagcattgatgcagtgt |
43187019 |
T |
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Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 178 - 221
Target Start/End: Original strand, 5040653 - 5040696
Alignment:
| Q |
178 |
aaacttgaggtaattagcagcttcatcaagcattgatgcagtgt |
221 |
Q |
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| T |
5040653 |
aaacttgagataatttgcagcttcatcaagcattgaagcagtgt |
5040696 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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