View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2586_low_3 (Length: 522)
Name: NF2586_low_3
Description: NF2586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2586_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 306; Significance: 1e-172; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 7 - 357
Target Start/End: Original strand, 7336794 - 7337139
Alignment:
| Q |
7 |
tcgaagaatatagatcaatgcaaaagcttggttagtgtatcttaattatcaaggaattaatgtaataggcaaattaatttgtgtaacttgatttgtatta |
106 |
Q |
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| T |
7336794 |
tcgaagaaaatagatcaatgcaaaagcttggttagtgtatcttaattatcaaggaat----gtaataggcaaattaatttgtgtaacttgatttgtatta |
7336889 |
T |
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| Q |
107 |
tatgaatggtgtatagaaatttgatttaaaatctagaatttatggtttgtatatcaaatcatatggtaaattaagttgtttgtcaaattacaaattcgga |
206 |
Q |
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| T |
7336890 |
tatgaatggtgtatagaaatttgatttaaaatctagaatttatggtttgtatatcaaatcatatggtaatttaagttgtttgtcaaattacaaattcgga |
7336989 |
T |
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| Q |
207 |
ttctttcaaacgaatccaacataaactcaaactcatatcatttgtgtccaaccttttggttaaacacaaacttaacattaatcatttgacaaatgtaatt |
306 |
Q |
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| T |
7336990 |
ttctttcaaacg-atccaaaataaactgaaactcatatcatttgagtccaaccttttggttaaacacaaacttaacattaatcatttgacaaatgtaatt |
7337088 |
T |
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| Q |
307 |
aaattctcctgcttttactattagtatagttaattcttgttatgtgtttaa |
357 |
Q |
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| T |
7337089 |
aaattctcctgcttttactattagtatagttaattcttgttatgtgtttaa |
7337139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 442 - 507
Target Start/End: Original strand, 7337231 - 7337296
Alignment:
| Q |
442 |
taagtttggaattgtagagatattttatgaattgatataaataaatgacatcatgttgttgtgatt |
507 |
Q |
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| T |
7337231 |
taagtttggaattgtagagatattttatgaattgatataaataagtgacatcatgttgttgtgatt |
7337296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 441 - 481
Target Start/End: Original strand, 7337326 - 7337366
Alignment:
| Q |
441 |
ataagtttggaattgtagagatattttatgaattgatataa |
481 |
Q |
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| T |
7337326 |
ataagtttggctttgtagagatattttatgaattaatataa |
7337366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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