View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2586_low_30 (Length: 233)
Name: NF2586_low_30
Description: NF2586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2586_low_30 |
 | |
|
| [»] chr2 (12 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 225; Significance: 1e-124; HSPs: 12)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 32182835 - 32182603
Alignment:
| Q |
1 |
aagttgttaataatggagacaataaggtatatatttttcttcaaatataccattaatatttgagtttcattcatactaaaatgtcattgggacgcataaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
32182835 |
aagttgttaataatggagacaataaggtatatatttttcttcaaatataccattaatatttgagtttcattcatactaaaatgtcattgggatgcataaa |
32182736 |
T |
|
| Q |
101 |
aattagaaaagatttagaagtatatgagccgacaaattaacgtttgttgataatgtcaacaggtgacactttcaggactattgaatgcgacagatggtct |
200 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32182735 |
aactagaaaagatttagaagtatatgagccgacaaattaacgtttgttgataatgtcaacaggtgacactttcaggactattgaatgcgacagatggtct |
32182636 |
T |
|
| Q |
201 |
ttggtcatgttgtggagaggaacacataattgt |
233 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
32182635 |
ttggtcatgttgtggagaggaacacataattgt |
32182603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 10 - 129
Target Start/End: Complemental strand, 32174787 - 32174668
Alignment:
| Q |
10 |
ataatggagacaataaggtatatatttttcttcaaatataccattaatatttgagtttcattcatactaaaatgtcattgggacgcataaaaattagaaa |
109 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||| ||||||| |||| ||||||||||||||||||| ||||||||| |||||| || ||||| |
|
|
| T |
32174787 |
ataatggatacaataaggtatatatttttcttcaaatatatcattaatctttgggtttcattcatactaaaatatcattgggatgcataagaacaagaaa |
32174688 |
T |
|
| Q |
110 |
agatttagaagtatatgagc |
129 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
32174687 |
agatttagaagtatatgagc |
32174668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 134 - 233
Target Start/End: Complemental strand, 32174616 - 32174517
Alignment:
| Q |
134 |
aaattaacgtttgttgataatgtcaacaggtgacactttcaggactattgaatgcgacagatggtctttggtcatgttgtggagaggaacacataattgt |
233 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || |||||||| |||||||||||||| |
|
|
| T |
32174616 |
aaattaacgtttgttgataatgtcaacaggtgacactttcaggactattgaatgcagtagatggtctttggtcgtgctgtggagaagaacacataattgt |
32174517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 137 - 233
Target Start/End: Complemental strand, 32118917 - 32118821
Alignment:
| Q |
137 |
ttaacgtttgttgataatgtcaacaggtgacactttcaggactattgaatgcgacagatggtctttggtcatgttgtggagaggaacacataattgt |
233 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| || ||||| |||||||||||||| |
|
|
| T |
32118917 |
ttaacgtttgttgatattgtcaacaggtgacactttcaggactattgaatgctgttgatggtctttggtcatgctgcggagaagaacacataattgt |
32118821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 154 - 233
Target Start/End: Complemental strand, 32156820 - 32156741
Alignment:
| Q |
154 |
tgtcaacaggtgacactttcaggactattgaatgcgacagatggtctttggtcatgttgtggagaggaacacataattgt |
233 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| |||||||||||||| |
|
|
| T |
32156820 |
tgtcaacaggtgacactttcaggactattgaatgcagtagatggtctttggtcatgctgtggagaagaacacataattgt |
32156741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 156 - 233
Target Start/End: Complemental strand, 32110634 - 32110557
Alignment:
| Q |
156 |
tcaacaggtgacactttcaggactattgaatgcgacagatggtctttggtcatgttgtggagaggaacacataattgt |
233 |
Q |
| |
|
||||||| ||||||||||||||||||||||||| |||||||||||||||||| |||||||| |||||||||||||| |
|
|
| T |
32110634 |
tcaacagatgacactttcaggactattgaatgcagtagatggtctttggtcatgctgtggagaagaacacataattgt |
32110557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 156 - 233
Target Start/End: Original strand, 32206826 - 32206903
Alignment:
| Q |
156 |
tcaacaggtgacactttcaggactattgaatgcgacagatggtctttggtcatgttgtggagaggaacacataattgt |
233 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| |||||||||||||||||| |||||||| |||||||||||||| |
|
|
| T |
32206826 |
tcaacaggtgacactttcaggactgttgaatgcagtagatggtctttggtcatgctgtggagaagaacacataattgt |
32206903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 5 - 86
Target Start/End: Complemental strand, 32157115 - 32157031
Alignment:
| Q |
5 |
tgttaataatggagacaat---aaggtatatatttttcttcaaatataccattaatatttgagtttcattcatactaaaatgtca |
86 |
Q |
| |
|
|||| |||||||||||||| ||||| |||||||||||||||||||| ||||||| |||||||||||||| ||||||||||||| |
|
|
| T |
32157115 |
tgttgataatggagacaatgataaggtgtatatttttcttcaaatatatcattaatctttgagtttcattcgtactaaaatgtca |
32157031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 159 - 233
Target Start/End: Complemental strand, 32157925 - 32157851
Alignment:
| Q |
159 |
acaggtgacactttcaggactattgaatgcgacagatggtctttggtcatgttgtggagaggaacacataattgt |
233 |
Q |
| |
|
|||| |||||||||| |||||||||||||||||||||||||| ||||| || |||||||| |||||||||||||| |
|
|
| T |
32157925 |
acagatgacactttcgggactattgaatgcgacagatggtctctggtcgtgctgtggagaagaacacataattgt |
32157851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 11 - 81
Target Start/End: Complemental strand, 32119143 - 32119073
Alignment:
| Q |
11 |
taatggagacaataaggtatatatttttcttcaaatataccattaatatttgagtttcattcatactaaaa |
81 |
Q |
| |
|
|||||||||||||||||||| |||| || ||||||||| |||| || ||||||||||||||||||||||| |
|
|
| T |
32119143 |
taatggagacaataaggtatgcatttctcgtcaaatatatcattcatctttgagtttcattcatactaaaa |
32119073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 159 - 233
Target Start/End: Original strand, 32211904 - 32211978
Alignment:
| Q |
159 |
acaggtgacactttcaggactattgaatgcgacagatggtctttggtcatgttgtggagaggaacacataattgt |
233 |
Q |
| |
|
|||| |||||||||| |||||||||||||| ||||||||||||||| || |||||||| |||||||||||||| |
|
|
| T |
32211904 |
acagatgacactttcgggactattgaatgcagtagatggtctttggtcgtgctgtggagaagaacacataattgt |
32211978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 32211755 - 32211808
Alignment:
| Q |
1 |
aagttgttaataatggagacaataaggtatatatttttcttcaaatataccatt |
54 |
Q |
| |
|
|||||||| |||||||| |||||||||||| |||||||||| ||||||| |||| |
|
|
| T |
32211755 |
aagttgttgataatggatacaataaggtatgtatttttctttaaatatatcatt |
32211808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University