View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2586_low_8 (Length: 330)
Name: NF2586_low_8
Description: NF2586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2586_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 16 - 313
Target Start/End: Original strand, 2490446 - 2490743
Alignment:
| Q |
16 |
cagagaaaatatattgaggacccttttggctaaagagaaggtgcacgggggacttgattttaaggaactcgcaactatgactgaaggatatagtggaagt |
115 |
Q |
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| T |
2490446 |
cagagaaaatatattgaggacccttttggctaaagagaaggtgcacgggggacttgattttaaggaactcgcaactatgactgaaggatatagtggaagt |
2490545 |
T |
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| Q |
116 |
gatctgaaggtttttctctattattgttttcctatggccgtaacttaactatcgtgttacaatctacaaatgcttttcttatgtttagtttctgatgtct |
215 |
Q |
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| T |
2490546 |
gatctgaaggtttttctctattattgttttcctatggccgtaacttaactatcgtgttacaatctacaaatgcttttcttatgtttagtttctgatgtct |
2490645 |
T |
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| Q |
216 |
taatgcattttccattttcattaattgttaaatgcagaacttatgcacaaccgctgcttatagacctgttagagagctaattcagcaagagatacaaa |
313 |
Q |
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| T |
2490646 |
taatgcattttccattttcattaattgttaaatgcagaacttatgcacaaccgctgcttatagacctgttagagagctaattcagcaagagatacaaa |
2490743 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 246 - 307
Target Start/End: Complemental strand, 41589494 - 41589433
Alignment:
| Q |
246 |
aatgcagaacttatgcacaaccgctgcttatagacctgttagagagctaattcagcaagaga |
307 |
Q |
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| T |
41589494 |
aatgcagaacttgtgcacaactgctgcttatcggccagttagagagttgattcagcaagaga |
41589433 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 87 - 127
Target Start/End: Original strand, 45989453 - 45989493
Alignment:
| Q |
87 |
caactatgactgaaggatatagtggaagtgatctgaaggtt |
127 |
Q |
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| T |
45989453 |
caactatgacagaaggatatagtggaagtgatcttaaggtt |
45989493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 87 - 127
Target Start/End: Original strand, 44936073 - 44936113
Alignment:
| Q |
87 |
caactatgactgaaggatatagtggaagtgatctgaaggtt |
127 |
Q |
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| T |
44936073 |
caactatgacagaaggatatagcggaagtgatcttaaggtt |
44936113 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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