View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2587_high_12 (Length: 414)
Name: NF2587_high_12
Description: NF2587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2587_high_12 |
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Alignment Details
Target: chr2 (Bit Score: 271; Significance: 1e-151; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 126 - 404
Target Start/End: Original strand, 3607655 - 3607933
Alignment:
| Q |
126 |
ttatgtgatggttgaattgtatcaaatagtcacttcactataaagaatcatataggtacaaattcacaagcaacttaaaaaattcacaaacaatcgtaac |
225 |
Q |
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| T |
3607655 |
ttatgtgatggttgaattgtatcaaatagtcacttcactataaagaatcatataggtacaaattcacaagcaacttaaaaaattcacaaacaatcgtaac |
3607754 |
T |
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| Q |
226 |
caaatgttagaagaaggagaagagattgaataatgtggtgaactataggcctgtggactcatgtgattcagactcaatttgaggatagcttgagaatctg |
325 |
Q |
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| T |
3607755 |
caaatgttagaagaaggagaagagattgaataatgtggtgaactataggcctttggactcatgtgattcagactcaatttgaggatagcttgagaatctg |
3607854 |
T |
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| Q |
326 |
agtcattgttaggattactggttccatataagtggttgttattctcatcctcttcaaactatgcaaagtggaggttcat |
404 |
Q |
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| T |
3607855 |
agtcattgttaggattactagttccatataagtggttgttattctcatcctcttcaaactatgcaaagtggaggttcat |
3607933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 17 - 69
Target Start/End: Original strand, 3607546 - 3607598
Alignment:
| Q |
17 |
aggaatatgattagaaacttcatgctctcatgtcacgtagctatagagttacg |
69 |
Q |
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| T |
3607546 |
aggaatatgattagaaacttcatgctctcatatcacgtagctatagagttacg |
3607598 |
T |
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