View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2587_high_16 (Length: 334)
Name: NF2587_high_16
Description: NF2587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2587_high_16 |
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Alignment Details
Target: chr7 (Bit Score: 196; Significance: 1e-106; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 19 - 323
Target Start/End: Original strand, 39758572 - 39758870
Alignment:
| Q |
19 |
gtattcaagctcttgcatgcaagttgttctacccaaattcttaatcaatcatctcaatcactaggtgag----aaaacaattaatgtctattcaaataaa |
114 |
Q |
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| T |
39758572 |
gtattcaagctcttgcatgcaagttgttctacccaaattcttaatcaatcatctcaatcactaggtgagtgagaaaacaattaatgtctattaaaataaa |
39758671 |
T |
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| Q |
115 |
acgcaagataatttcnnnnnnnggtggtgtttgtcctnnnnnnnntttgatcatgatttgatgacatttgacggtagtatttgataaagttaattgattg |
214 |
Q |
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| T |
39758672 |
acgcaagataattttaaaaaaaggtggtgtttgtcctaaaaaaaaattgatcatgatttgatgacatttgacggtagtatttgataaagttaattgattg |
39758771 |
T |
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| Q |
215 |
attcttattaattcttattaagacaatattttagtttagattaaattttactaaattttgaaaatagcaaaatattaggcatgaagtaattcttgtaaat |
314 |
Q |
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| T |
39758772 |
attc----------ttattaagacaatattttagtttagattaaattttactaaattttgaaaatagcaaaatattaggcatgaagtaattcttgtaaat |
39758861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 160 - 201
Target Start/End: Original strand, 42128035 - 42128076
Alignment:
| Q |
160 |
tttgatcatgatttgatgacatttgacggtagtatttgataa |
201 |
Q |
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| T |
42128035 |
tttgatcatgatttgatgatatttgatggtagtatttgataa |
42128076 |
T |
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