View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2587_high_19 (Length: 292)
Name: NF2587_high_19
Description: NF2587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2587_high_19 |
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Alignment Details
Target: chr4 (Bit Score: 85; Significance: 2e-40; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 19 - 129
Target Start/End: Original strand, 56295851 - 56295960
Alignment:
| Q |
19 |
tttgatggtttgatacaaaata-tatttggtttaaggaatgcagagatatacttagaatattaaaaatggtgaatttttaaaatgagttcctaagtgggt |
117 |
Q |
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| T |
56295851 |
tttgatggtttgatacaaaatactatat--tttaaggaatgcagagatatacttagaatataaaaaatggtgaatttttaaaatgagttcctaagtgggt |
56295948 |
T |
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| Q |
118 |
ctacgtgtacat |
129 |
Q |
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| T |
56295949 |
ctacgtgtacat |
56295960 |
T |
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Target: chr4; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 180 - 257
Target Start/End: Original strand, 56296011 - 56296088
Alignment:
| Q |
180 |
acactctcaaaaccaacacatcattatatttcaacagtaatgtatatgttttctaccaatgactttagctataattat |
257 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
56296011 |
acactctcaaaaccaacacatcattatatttcaacagtaatgtatattttttctaccaatgactttagctataattat |
56296088 |
T |
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