View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2587_high_28 (Length: 246)
Name: NF2587_high_28
Description: NF2587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2587_high_28 |
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Alignment Details
Target: chr1 (Bit Score: 184; Significance: 1e-99; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 34592602 - 34592833
Alignment:
| Q |
1 |
agcggagatttcttttgaaacaaacgattgagttgaatgctgcatatttttcatataagatataatcaaaatcatagaaatatgatctaaagaacaatat |
100 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
34592602 |
agcggagatttcttttgaaacaaacaattgagttgaatgctgcatatttttcatataagatataatcaaaatcatagaaatatgatctaaaaaacaatat |
34592701 |
T |
|
| Q |
101 |
aaggtcaattttgtagctatattacctcccatagatctcttgcatcaacaatagcttctggttctaaacctatatccgaccaagatgcagttaccgttgc |
200 |
Q |
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|
|||||||||||||||| |||||||||||||||| |||||||||||||||||| ||||||||||||| ||||| || ||||| |||||| |||||||||| |
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| T |
34592702 |
aaggtcaattttgtaggtatattacctcccataaatctcttgcatcaacaatggcttctggttctaggcctatttcagaccaggatgcaattaccgttgc |
34592801 |
T |
|
| Q |
201 |
ctttgatgagctcctattccataaaataactg |
232 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
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| T |
34592802 |
atttgatgagctcctattccataaaataactg |
34592833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 122 - 224
Target Start/End: Original strand, 34577227 - 34577329
Alignment:
| Q |
122 |
ttacctcccatagatctcttgcatcaacaatagcttctggttctaaacctatatccgaccaagatgcagttaccgttgcctttgatgagctcctattcca |
221 |
Q |
| |
|
|||||||||||| ||||||||||||||| || | ||||||||| | ||||| || |||||||| ||||| || ||||| |||||||| || |||||||| |
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| T |
34577227 |
ttacctcccataaatctcttgcatcaactatcgtttctggttcaaggcctatgtcagaccaagacgcagtaactgttgcatttgatgaacttctattcca |
34577326 |
T |
|
| Q |
222 |
taa |
224 |
Q |
| |
|
||| |
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|
| T |
34577327 |
taa |
34577329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 55; Significance: 1e-22; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 122 - 232
Target Start/End: Original strand, 32599926 - 32600036
Alignment:
| Q |
122 |
ttacctcccatagatctcttgcatcaacaatagcttctggttctaaacctatatccgaccaagatgcagttaccgttgcctttgatgagctcctattcca |
221 |
Q |
| |
|
|||||||||||| ||||||||||||||| |||| ||||| || | |||||| || ||||||||||||||||| ||||| |||||||| || |||||||| |
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| T |
32599926 |
ttacctcccataaatctcttgcatcaactatagtttctgatttcagacctatgtctgaccaagatgcagttactgttgcatttgatgaacttctattcca |
32600025 |
T |
|
| Q |
222 |
taaaataactg |
232 |
Q |
| |
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|||||| |||| |
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|
| T |
32600026 |
taaaatcactg |
32600036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 122 - 232
Target Start/End: Original strand, 32589478 - 32589588
Alignment:
| Q |
122 |
ttacctcccatagatctcttgcatcaacaatagcttctggttctaaacctatatccgaccaagatgcagttaccgttgcctttgatgagctcctattcca |
221 |
Q |
| |
|
|||||||||||| ||||||||||||||| |||| ||||| || | |||||| || |||||||||||||||| ||||| |||||||| || |||||||| |
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|
| T |
32589478 |
ttacctcccataaatctcttgcatcaactatagtttctgatttcagacctatgtctaaccaagatgcagttactgttgcatttgatgaacttctattcca |
32589577 |
T |
|
| Q |
222 |
taaaataactg |
232 |
Q |
| |
|
|||||| |||| |
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|
| T |
32589578 |
taaaatcactg |
32589588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 224
Target Start/End: Complemental strand, 24884459 - 24884359
Alignment:
| Q |
124 |
acctcccatagatctcttgcatcaacaatagcttctggttctaaacctatatccgaccaagatgcagttaccgttgcctttgatgagctcctattccata |
223 |
Q |
| |
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|||||||||| |||||||||||||| || | |||||| || ||||| || ||||||||||||||||| |||| || ||||| || |||||||||| |
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| T |
24884459 |
acctcccataaatctcttgcatcaattgaagttcctggttttagacctaggtcagaccaagatgcagttactattgctttcgatgaacttctattccata |
24884360 |
T |
|
| Q |
224 |
a |
224 |
Q |
| |
|
| |
|
|
| T |
24884359 |
a |
24884359 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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