View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2587_high_29 (Length: 239)
Name: NF2587_high_29
Description: NF2587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2587_high_29 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 21 - 239
Target Start/End: Complemental strand, 2113734 - 2113516
Alignment:
| Q |
21 |
agtgggccccatttgaagcccttcgggctccaagttcaacggaagagattgaacagtgaatgtagcagccatgaactgagttcttcttgcattgatcttc |
120 |
Q |
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| T |
2113734 |
agtgggccccatttgaagcccttcgggctccaagttcaacggaagagattgaacagtgaatgtagcagccatgaactgagttcttcttgcattgatcttc |
2113635 |
T |
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| Q |
121 |
ccagcaggaacgaacatgaaaccgatttgttttccataggagagaagctgaaaggaactgtcgtagtgtgagaatgttcctctgttagggtttttaacag |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2113634 |
ccagcaggaacgaacatgaaaccgatttgttttccataggagagaagctgaaaggaactgtcgtagtgtgagaatgttcctctgttagggtttttaacag |
2113535 |
T |
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| Q |
221 |
aggtgtattgagagaaggt |
239 |
Q |
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| T |
2113534 |
aagtgtattgagagaaggt |
2113516 |
T |
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