View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2587_high_6 (Length: 501)

Name: NF2587_high_6
Description: NF2587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2587_high_6
NF2587_high_6
[»] chr3 (9 HSPs)
chr3 (29-482)||(30540605-30541055)
chr3 (357-475)||(49436255-49436373)
chr3 (378-468)||(30530936-30531026)
chr3 (379-468)||(27209399-27209488)
chr3 (243-327)||(27209179-27209263)
chr3 (436-468)||(20514521-20514553)
chr3 (436-468)||(30930260-30930292)
chr3 (243-327)||(49436465-49436549)
chr3 (82-171)||(27209059-27209148)
[»] chr8 (13 HSPs)
chr8 (324-482)||(27675675-27675838)
chr8 (386-468)||(15893331-15893413)
chr8 (336-423)||(22206140-22206227)
chr8 (378-467)||(24619420-24619509)
chr8 (72-171)||(27675941-27676037)
chr8 (378-468)||(29670948-29671040)
chr8 (72-171)||(22205926-22206025)
chr8 (72-168)||(29670666-29670765)
chr8 (378-467)||(30944505-30944594)
chr8 (436-468)||(32076095-32076127)
chr8 (243-293)||(22206027-22206077)
chr8 (84-113)||(23847979-23848008)
chr8 (436-468)||(5016324-5016356)
[»] chr4 (9 HSPs)
chr4 (336-468)||(54253972-54254104)
chr4 (378-465)||(5317830-5317917)
chr4 (230-318)||(21177795-21177884)
chr4 (378-467)||(41784484-41784573)
chr4 (72-160)||(6596218-6596306)
chr4 (436-468)||(50007182-50007214)
chr4 (436-468)||(50334946-50334978)
chr4 (281-318)||(6187535-6187572)
chr4 (438-483)||(47534242-47534287)
[»] chr5 (10 HSPs)
chr5 (336-468)||(20159933-20160065)
chr5 (325-411)||(13402667-13402753)
chr5 (72-168)||(14217005-14217101)
chr5 (378-468)||(6374440-6374530)
chr5 (78-171)||(20160219-20160311)
chr5 (436-468)||(26506439-26506471)
chr5 (436-468)||(35049664-35049696)
chr5 (242-317)||(20160113-20160188)
chr5 (84-113)||(31153122-31153151)
chr5 (436-468)||(20883859-20883891)
[»] chr6 (10 HSPs)
chr6 (354-468)||(2289286-2289400)
chr6 (230-332)||(2289450-2289552)
chr6 (388-482)||(7648390-7648485)
chr6 (389-485)||(31177492-31177588)
chr6 (389-485)||(31198103-31198199)
chr6 (230-318)||(20447909-20447998)
chr6 (72-167)||(2289574-2289669)
chr6 (271-318)||(34231349-34231396)
chr6 (436-468)||(1030864-1030896)
chr6 (72-128)||(20447798-20447854)
[»] chr2 (6 HSPs)
chr2 (338-465)||(19506886-19507013)
chr2 (378-467)||(36342082-36342171)
chr2 (80-171)||(36341288-36341379)
chr2 (385-466)||(20566640-20566721)
chr2 (440-468)||(9827560-9827588)
chr2 (436-468)||(35003999-35004031)
[»] chr7 (6 HSPs)
chr7 (385-467)||(12869121-12869203)
chr7 (72-167)||(26151763-26151858)
chr7 (406-465)||(26152090-26152149)
chr7 (436-468)||(2368633-2368665)
chr7 (438-483)||(20904808-20904853)
chr7 (440-468)||(23942875-23942903)
[»] chr1 (11 HSPs)
chr1 (378-468)||(38810606-38810696)
chr1 (238-326)||(25140623-25140711)
chr1 (72-130)||(40091285-40091343)
chr1 (435-468)||(30703942-30703975)
chr1 (406-463)||(40091835-40091891)
chr1 (436-468)||(25818303-25818335)
chr1 (405-480)||(25140810-25140885)
chr1 (82-113)||(31431270-31431301)
chr1 (72-126)||(25140503-25140557)
chr1 (72-128)||(10164883-10164939)
chr1 (436-468)||(23942811-23942843)
[»] scaffold0182 (1 HSPs)
scaffold0182 (348-411)||(23620-23683)


Alignment Details
Target: chr3 (Bit Score: 270; Significance: 1e-150; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 29 - 482
Target Start/End: Complemental strand, 30541055 - 30540605
Alignment:
Q  29 caatacaatttattgtgacactccctcccactcccgaaaacgcaaaagcaaaaggagaatttgaagttattgaagaagatgaagacaattcaatttcact 128  Q
    |||||||||||||||||||||||||    ||| ||||||||||||||| ||||||||||| |||| | ||||| ||||||||||||||||||||||||||    
T  30541055 caatacaatttattgtgacactccc----acttccgaaaacgcaaaagaaaaaggagaatatgaaat-attgacgaagatgaagacaattcaatttcact 30540961  T
Q  129 agctagctagataggttatgaaacttttttg-tcggtgttcatcannnnnnngttgata---caccaaaatatgttggtctaannnnnnnnncgttcnnn 224  Q
    ||||||||||||||||||||| ||||||||  |||||||||||||       |||||||   ||||||||||||||||| |||         | |||       
T  30540960 agctagctagataggttatgatactttttttatcggtgttcatcatttttctgttgatattacaccaaaatatgttggtgtaattttttt--cattcaaa 30540863  T
Q  225 nnnnnttacaccaacatattttttgtggtcgattatgtaataccaatttttatgaccaatatgtaactaacgttatataatttatataaatatacgactt 324  Q
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  30540862 aaaaattacaccaacatattttttgtggtcgattatgtaataccaatttttatgaccaatatgtaactaatgttatataatttatataaatatacgactt 30540763  T
Q  325 tttatgtggtaattattgctcacattttatataaatatatgtctccatttaaccaactacttattttatcttttatttggttttattcttatacttgtta 424  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| ||||||||||    
T  30540762 tttatgtggtaattattgctcacattttatataaatatatgtctccttttaaccaactacttattttatctttcatttggttttattctgatacttgtta 30540663  T
Q  425 ttccataaaactttgtgaagtgaaacatgtctgaagatgcacaacttaaagctcatgt 482  Q
    | |||||||||||||||||||||||||||| ||||||||||||| |||||||||||||    
T  30540662 tcccataaaactttgtgaagtgaaacatgtgtgaagatgcacaagttaaagctcatgt 30540605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 357 - 475
Target Start/End: Complemental strand, 49436373 - 49436255
Alignment:
Q  357 aaatatatgtctccatttaaccaactacttattttatcttttatttggttttattcttatacttgttattccataaaactttgtgaagtgaaacatgtct 456  Q
    |||||||||| || | |||  |||||| ||||||||||||| |||||| |||||||||||||||||||||||| |||  |||||||||||||||||||||    
T  49436373 aaatatatgtatctaattattcaactatttattttatctttcatttggatttattcttatacttgttattccaaaaacttttgtgaagtgaaacatgtct 49436274  T
Q  457 gaagatgcacaacttaaag 475  Q
     ||||||||||| ||||||    
T  49436273 aaagatgcacaagttaaag 49436255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 378 - 468
Target Start/End: Original strand, 30530936 - 30531026
Alignment:
Q  378 caactacttattttatcttttatttggttttattcttatacttgttattccataaaactttgtgaagtgaaacatgtctgaagatgcacaa 468  Q
    |||||| ||||||||||||| ||||||||||||||| |||||||||||||||| | | ||||||||||||||||| | |||||||||||||    
T  30530936 caactatttattttatctttcatttggttttattctcatacttgttattccattatattttgtgaagtgaaacatttttgaagatgcacaa 30531026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 379 - 468
Target Start/End: Original strand, 27209399 - 27209488
Alignment:
Q  379 aactacttattttatcttttatttggttttattcttatacttgttattccataaaactttgtgaagtgaaacatgtctgaagatgcacaa 468  Q
    ||||| ||||||||||||| ||||| |||||||||| ||||||| ||||||||||  |||||||| | ||| ||||||||||||||||||    
T  27209399 aactatttattttatctttcatttgattttattcttgtacttgtcattccataaacttttgtgaaataaaatatgtctgaagatgcacaa 27209488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 243 - 327
Target Start/End: Original strand, 27209179 - 27209263
Alignment:
Q  243 ttttttgtggtcgattatgtaataccaatttttatgaccaatatgtaactaacgttatataatttatataaatatacgacttttt 327  Q
    |||||| ||||||||||||||| ||||||| || || |||||||||||| ||| |||||||  ||||||||||||| ||||||||    
T  27209179 ttttttatggtcgattatgtaacaccaattcttgtgtccaatatgtaacaaacattatatagattatataaatatatgacttttt 27209263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 436 - 468
Target Start/End: Complemental strand, 20514553 - 20514521
Alignment:
Q  436 tttgtgaagtgaaacatgtctgaagatgcacaa 468  Q
    |||||||||||||||||||||||||||||||||    
T  20514553 tttgtgaagtgaaacatgtctgaagatgcacaa 20514521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 436 - 468
Target Start/End: Complemental strand, 30930292 - 30930260
Alignment:
Q  436 tttgtgaagtgaaacatgtctgaagatgcacaa 468  Q
    |||||||||||||||||||||||||||||||||    
T  30930292 tttgtgaagtgaaacatgtctgaagatgcacaa 30930260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 243 - 327
Target Start/End: Complemental strand, 49436549 - 49436465
Alignment:
Q  243 ttttttgtggtcgattatgtaataccaatttttatgaccaatatgtaactaacgttatataatttatataaatatacgacttttt 327  Q
    ||||||||||||||||||||||  | ||| ||| || |||||||| ||||||  |||||||  ||||||||||||| ||| ||||    
T  49436549 ttttttgtggtcgattatgtaacgctaatatttgtggccaatatgcaactaaaattatatagattatataaatatatgacatttt 49436465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 82 - 171
Target Start/End: Original strand, 27209059 - 27209148
Alignment:
Q  82 ggagaatttgaagttattgaagaagatgaagacaattcaatttcactagctagctagataggttatgaaacttttttgtcggtgttcatc 171  Q
    |||||||||||||| | |||||||||||||||  | ||  | ||||||||||| |||||| | |||||  ||||||||| ||| ||||||    
T  27209059 ggagaatttgaagtaaatgaagaagatgaagatgactccctatcactagctagttagatatgctatgacgcttttttgttggttttcatc 27209148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 84; Significance: 1e-39; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 324 - 482
Target Start/End: Complemental strand, 27675838 - 27675675
Alignment:
Q  324 ttttatgtggtaattattgctcacattttatataaatatatgtctccatttaaccaactacttattttatcttttatttggttttattcttat-----ac 418  Q
    ||||||||||| ||||||||| ||||||||||||||||||||| |||| |||  |||||| ||||||||||||| ||||| ||||||| | ||     ||    
T  27675838 ttttatgtggttattattgctaacattttatataaatatatgtttccaattattcaactatttattttatctttcatttgattttattttaatttgatac 27675739  T
Q  419 ttgttattccataaaactttgtgaagtgaaacatgtctgaagatgcacaacttaaagctcatgt 482  Q
    |||||||||||||||| ||||||||||||||||||| ||||||||||||| || ||||||||||    
T  27675738 ttgttattccataaaattttgtgaagtgaaacatgtttgaagatgcacaagttgaagctcatgt 27675675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 386 - 468
Target Start/End: Complemental strand, 15893413 - 15893331
Alignment:
Q  386 tattttatcttttatttggttttattcttatacttgttattccataaaactttgtgaagtgaaacatgtctgaagatgcacaa 468  Q
    |||||||||||| ||||| ||||||||| |||||| ||||||||| ||| |||||||||||||||||||||||||||||||||    
T  15893413 tattttatctttcatttgattttattctcatacttattattccattaaattttgtgaagtgaaacatgtctgaagatgcacaa 15893331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 336 - 423
Target Start/End: Original strand, 22206140 - 22206227
Alignment:
Q  336 attattgctcacattttatataaatatatgtctccatttaaccaactacttattttatcttttatttggttttattcttatacttgtt 423  Q
    |||||||||||||||||||| ||||||||||||| | |||  |||||| ||||||||| ||| ||||  |||||||||||||||||||    
T  22206140 attattgctcacattttataaaaatatatgtctctaattattcaactatttattttatttttcatttaattttattcttatacttgtt 22206227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 378 - 467
Target Start/End: Complemental strand, 24619509 - 24619420
Alignment:
Q  378 caactacttattttatcttttatttggttttattcttatacttgttattccataaaactttgtgaagtgaaacatgtctgaagatgcaca 467  Q
    |||||| ||||||||||||| ||||| |||| |||| |||||||||||||| | | | ||||||||||||||||||||| | ||||||||    
T  24619509 caactatttattttatctttcatttgattttgttctcatacttgttattccgttatattttgtgaagtgaaacatgtctaacgatgcaca 24619420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 72 - 171
Target Start/End: Complemental strand, 27676037 - 27675941
Alignment:
Q  72 aaaagcaaaaggagaatttgaagttattgaagaagatgaagacaattcaatttcactagctagctagataggttatgaaacttttttgtcggtgttcatc 171  Q
    ||||||||||||||||||||||||||||   ||| |||||||  |||||||||||||||||| |||||||   ||||| |||||||| ||||| ||||||    
T  27676037 aaaagcaaaaggagaatttgaagttatt---gaaaatgaagatgattcaatttcactagctatctagataatgtatgacacttttttatcggtattcatc 27675941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 378 - 468
Target Start/End: Original strand, 29670948 - 29671040
Alignment:
Q  378 caactacttattttatcttttatttggttttattcttatacttgttattccataaaac--tttgtgaagtgaaacatgtctgaagatgcacaa 468  Q
    |||||| ||| ||||||||| ||||| ||||||||| ||||||| |||||||| | |   ||||||||||||||||||| |||||||||||||    
T  29670948 caactatttaatttatctttcatttgattttattctcatacttgctattccattatatattttgtgaagtgaaacatgtttgaagatgcacaa 29671040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 72 - 171
Target Start/End: Original strand, 22205926 - 22206025
Alignment:
Q  72 aaaagcaaaaggagaatttgaagttattgaagaagatgaagacaattcaatttcactagctagctagataggttatgaaacttttttgtcggtgttcatc 171  Q
    |||| |||||||| |||||||||| |||||||||||||||||  |||   | ||| ||||||| |||||||| ||||| |||||| | ||||||||||||    
T  22205926 aaaaccaaaaggataatttgaagtaattgaagaagatgaagatgattatctatcagtagctagttagataggctatgacacttttctatcggtgttcatc 22206025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 72 - 168
Target Start/End: Original strand, 29670666 - 29670765
Alignment:
Q  72 aaaagcaaaaggagaatttgaagttattgaagaagatgaagacaat---tcaatttcactagctagctagataggttatgaaacttttttgtcggtgttc 168  Q
    |||| ||||||||||||||||||| ||||||||||| |||||  ||   ||  | ||||||||||| |||||||| ||||| |  |||||||||||||||    
T  29670666 aaaaccaaaaggagaatttgaagtcattgaagaagaagaagatgatgattccctatcactagctagttagataggctatgacatatttttgtcggtgttc 29670765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 378 - 467
Target Start/End: Original strand, 30944505 - 30944594
Alignment:
Q  378 caactacttattttatcttttatttggttttattcttatacttgttattccataaaactttgtgaagtgaaacatgtctgaagatgcaca 467  Q
    |||||| ||||||||||||| ||||| |||||||||  ||||||||||| ||| | |  |||  ||||||||||| ||| ||||||||||    
T  30944505 caactatttattttatctttcatttgattttattctcgtacttgttattacattatatgttgcaaagtgaaacatctcttaagatgcaca 30944594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 436 - 468
Target Start/End: Original strand, 32076095 - 32076127
Alignment:
Q  436 tttgtgaagtgaaacatgtctgaagatgcacaa 468  Q
    |||||||||||||||||||||||||||||||||    
T  32076095 tttgtgaagtgaaacatgtctgaagatgcacaa 32076127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 243 - 293
Target Start/End: Original strand, 22206027 - 22206077
Alignment:
Q  243 ttttttgtggtcgattatgtaataccaatttttatgaccaatatgtaacta 293  Q
    |||| |||| |||||||||||| ||||||||||||| ||||||| ||||||    
T  22206027 ttttctgtgatcgattatgtaacaccaatttttatggccaatatataacta 22206077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 84 - 113
Target Start/End: Complemental strand, 23848008 - 23847979
Alignment:
Q  84 agaatttgaagttattgaagaagatgaaga 113  Q
    ||||||||||||||||||||||||||||||    
T  23848008 agaatttgaagttattgaagaagatgaaga 23847979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 436 - 468
Target Start/End: Complemental strand, 5016356 - 5016324
Alignment:
Q  436 tttgtgaagtgaaacatgtctgaagatgcacaa 468  Q
    ||||||||||||||||||||||| |||||||||    
T  5016356 tttgtgaagtgaaacatgtctgaggatgcacaa 5016324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 81; Significance: 6e-38; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 336 - 468
Target Start/End: Original strand, 54253972 - 54254104
Alignment:
Q  336 attattgctcacattttatataaatatatgtctccatttaaccaactacttattttatcttttatttggttttattcttatacttgttattccataaaac 435  Q
    |||||||||| |||||||||||||||| |||||  | |||  |||||| ||||||||||||| |||||||||||||||||||||||||||||||||||      
T  54253972 attattgctcgcattttatataaatatgtgtctataattattcaactatttattttatctttcatttggttttattcttatacttgttattccataaact 54254071  T
Q  436 tttgtgaagtgaaacatgtctgaagatgcacaa 468  Q
    |||||||||| |||| |||||||||||||||||    
T  54254072 tttgtgaagtaaaacttgtctgaagatgcacaa 54254104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 378 - 465
Target Start/End: Original strand, 5317830 - 5317917
Alignment:
Q  378 caactacttattttatcttttatttggttttattcttatacttgttattccataaaactttgtgaagtgaaacatgtctgaagatgca 465  Q
    |||||| ||||||||||||||||||| |||||||||||||||||||||||||||||  |||||||| |||||||||||| ||||||||    
T  5317830 caactatttattttatcttttatttgattttattcttatacttgttattccataaacttttgtgaaatgaaacatgtctcaagatgca 5317917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 230 - 318
Target Start/End: Original strand, 21177795 - 21177884
Alignment:
Q  230 ttacaccaacatatttttt-gtggtcgattatgtaataccaatttttatgaccaatatgtaactaacgttatataatttatataaatata 318  Q
    ||||||| ||||||||||| |||| ||||||||||| ||| || ||| ||||||||||||||||||| |||||||  |||||||||||||    
T  21177795 ttacacctacatattttttcgtggccgattatgtaacaccgatatttgtgaccaatatgtaactaacattatatagattatataaatata 21177884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 378 - 467
Target Start/End: Original strand, 41784484 - 41784573
Alignment:
Q  378 caactacttattttatcttttatttggttttattcttatacttgttattccataaaactttgtgaagtgaaacatgtctgaagatgcaca 467  Q
    |||||| ||||||||||||| ||||| |||||||||  ||||||||||||||| | | ||||  ||||||||||| ||| ||||||||||    
T  41784484 caactatttattttatctttcatttgattttattctcgtacttgttattccattatattttgcaaagtgaaacatctctcaagatgcaca 41784573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 72 - 160
Target Start/End: Complemental strand, 6596306 - 6596218
Alignment:
Q  72 aaaagcaaaaggagaatttgaagttattgaagaagatgaagacaattcaatttcactagctagctagataggttatgaaacttttttgt 160  Q
    |||| |||||| |||||| ||||| ||||||||||| ||| |  || || | ||||||||||| || ||||| ||||||||||||||||    
T  6596306 aaaatcaaaagaagaattcgaagtcattgaagaagacgaaaatgatgcattatcactagctagttatataggctatgaaacttttttgt 6596218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 436 - 468
Target Start/End: Complemental strand, 50007214 - 50007182
Alignment:
Q  436 tttgtgaagtgaaacatgtctgaagatgcacaa 468  Q
    |||||||||||||||||||||||||||||||||    
T  50007214 tttgtgaagtgaaacatgtctgaagatgcacaa 50007182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 436 - 468
Target Start/End: Complemental strand, 50334978 - 50334946
Alignment:
Q  436 tttgtgaagtgaaacatgtctgaagatgcacaa 468  Q
    |||||||||||||||||||||||||||||||||    
T  50334978 tttgtgaagtgaaacatgtctgaagatgcacaa 50334946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 281 - 318
Target Start/End: Complemental strand, 6187572 - 6187535
Alignment:
Q  281 caatatgtaactaacgttatataatttatataaatata 318  Q
    |||||| ||||||||||||| |||||||||||||||||    
T  6187572 caatatataactaacgttatgtaatttatataaatata 6187535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 438 - 483
Target Start/End: Original strand, 47534242 - 47534287
Alignment:
Q  438 tgtgaagtgaaacatgtctgaagatgcacaacttaaagctcatgtt 483  Q
    ||||||||  ||||||||| ||||||||||| ||||||||||||||    
T  47534242 tgtgaagttcaacatgtctcaagatgcacaaattaaagctcatgtt 47534287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 73; Significance: 4e-33; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 336 - 468
Target Start/End: Complemental strand, 20160065 - 20159933
Alignment:
Q  336 attattgctcacattttatataaatatatgtctccatttaaccaactacttattttatcttttatttggttttattcttatacttgttattccataaaac 435  Q
    ||||||||||| |||||||| ||| ||||||||| | |||   ||||||||||||||||||| ||||| ||||||| |||||||||||||||||||||      
T  20160065 attattgctcagattttataaaaacatatgtctctaattatgaaactacttattttatctttcatttgattttattattatacttgttattccataaact 20159966  T
Q  436 tttgtgaagtgaaacatgtctgaagatgcacaa 468  Q
    |||||| ||| ||||||||||||||||||||||    
T  20159965 tttgtgtagttaaacatgtctgaagatgcacaa 20159933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 325 - 411
Target Start/End: Complemental strand, 13402753 - 13402667
Alignment:
Q  325 tttatgtggtaattattgctcacattttatataaatatatgtctccatttaaccaactacttattttatcttttatttggttttatt 411  Q
    |||||||||| ||||||||||  |||||||||||||||||||||||| |||| |||| | ||||||||||||| ||||| |||||||    
T  13402753 tttatgtggttattattgctcgtattttatataaatatatgtctccagttaatcaacaatttattttatctttcatttgattttatt 13402667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 72 - 168
Target Start/End: Complemental strand, 14217101 - 14217005
Alignment:
Q  72 aaaagcaaaaggagaatttgaagttattgaagaagatgaagacaattcaatttcactagctagctagataggttatgaaacttttttgtcggtgttc 168  Q
    |||| ||||||||||||||||||| |||||||||||||||||  || || | ||||||||||| ||||||||  |||| ||||||||||| ||||||    
T  14217101 aaaatcaaaaggagaatttgaagtcattgaagaagatgaagatgatgcactatcactagctagttagataggcaatgatacttttttgtcagtgttc 14217005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 378 - 468
Target Start/End: Original strand, 6374440 - 6374530
Alignment:
Q  378 caactacttattttatcttttatttggttttattcttatacttgttattccataaaactttgtgaagtgaaacatgtctgaagatgcacaa 468  Q
    |||||| || |||||||||| ||||| ||||||| | |||||||||||| ||| | | ||| ||||||||||||||||| |||||||||||    
T  6374440 caactatttgttttatctttcatttgattttattttcatacttgttatttcattatattttttgaagtgaaacatgtctcaagatgcacaa 6374530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 78 - 171
Target Start/End: Complemental strand, 20160311 - 20160219
Alignment:
Q  78 aaaaggagaatttgaagttattgaagaagatgaagacaattcaatttcactagctagctagataggttatgaaacttttttgtcggtgttcatc 171  Q
    |||||||||||||||||| |||||||||||||||||  ||||  | ||||||||||| | |||| | ||||| | |||||||||||||||||||    
T  20160311 aaaaggagaatttgaagtaattgaagaagatgaagatgattccctatcactagctagtttgataagctatgaca-ttttttgtcggtgttcatc 20160219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 436 - 468
Target Start/End: Complemental strand, 26506471 - 26506439
Alignment:
Q  436 tttgtgaagtgaaacatgtctgaagatgcacaa 468  Q
    |||||||||||||||||||||||||||||||||    
T  26506471 tttgtgaagtgaaacatgtctgaagatgcacaa 26506439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 436 - 468
Target Start/End: Complemental strand, 35049696 - 35049664
Alignment:
Q  436 tttgtgaagtgaaacatgtctgaagatgcacaa 468  Q
    |||||||||||||||||||||||||||||||||    
T  35049696 tttgtgaagtgaaacatgtctgaagatgcacaa 35049664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 242 - 317
Target Start/End: Complemental strand, 20160188 - 20160113
Alignment:
Q  242 attttttgtggtcgattatgtaataccaatttttatgaccaatatgtaactaacgttatataatttatataaatat 317  Q
    ||||||| |||||||||||||||   |||||||| || | ||||||||||||||  ||||||  ||||||||||||    
T  20160188 attttttatggtcgattatgtaacgtcaatttttgtggcaaatatgtaactaacactatatagattatataaatat 20160113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 84 - 113
Target Start/End: Complemental strand, 31153151 - 31153122
Alignment:
Q  84 agaatttgaagttattgaagaagatgaaga 113  Q
    ||||||||||||||||||||||||||||||    
T  31153151 agaatttgaagttattgaagaagatgaaga 31153122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 436 - 468
Target Start/End: Complemental strand, 20883891 - 20883859
Alignment:
Q  436 tttgtgaagtgaaacatgtctgaagatgcacaa 468  Q
    ||||||||||||||||||||||||| |||||||    
T  20883891 tttgtgaagtgaaacatgtctgaagttgcacaa 20883859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 63; Significance: 4e-27; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 354 - 468
Target Start/End: Complemental strand, 2289400 - 2289286
Alignment:
Q  354 tataaatatatgtctccatttaaccaactacttattttatcttttatttggttttattcttatacttgttattccataaaactttgtgaagtgaaacatg 453  Q
    |||||| ||||||||||| |||  |||||| ||||||||||||| ||||| ||||||| | |||||||||||||| ||||  |||||||||||||||||     
T  2289400 tataaaaatatgtctccaattattcaactatttattttatctttcatttgattttattatcatacttgttattccttaaacttttgtgaagtgaaacata 2289301  T
Q  454 tctgaagatgcacaa 468  Q
    |||||||||||||||    
T  2289300 tctgaagatgcacaa 2289286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 230 - 332
Target Start/End: Complemental strand, 2289552 - 2289450
Alignment:
Q  230 ttacaccaacatattttttgtggtcgattatgtaataccaatttttatgaccaatatgtaactaacgttatataatttatataaatatacgactttttat 329  Q
    ||||||| |||||||||||||||| ||||||| ||   |||||||| || |||||||||||||||| |||||||  ||||||||||||| |||||||| |    
T  2289552 ttacacctacatattttttgtggttgattatgaaacgtcaatttttgtggccaatatgtaactaacattatatagattatataaatatatgacttttttt 2289453  T
Q  330 gtg 332  Q
    |||    
T  2289452 gtg 2289450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 388 - 482
Target Start/End: Complemental strand, 7648485 - 7648390
Alignment:
Q  388 ttttatcttttatttggttttattcttatacttgtt-attccataaaactttgtgaagtgaaacatgtctgaagatgcacaacttaaagctcatgt 482  Q
    |||||||||| |||||| |||||||| ||| || || ||||||| ||| ||||||||||||||||||| |||||||||| || || ||||||||||    
T  7648485 ttttatctttcatttggatttattctcatatttttttattccattaaattttgtgaagtgaaacatgtttgaagatgcataagttgaagctcatgt 7648390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 389 - 485
Target Start/End: Original strand, 31177492 - 31177588
Alignment:
Q  389 tttatcttttatttggttttattcttatacttgttattccataaaactttgtgaagtgaaacatgtctgaagatgcacaacttaaagctcatgtttg 485  Q
    |||| |||| |||| |||||||||||||| ||| |||| ||||||| ||||||||||  ||||| ||| ||||||| ||  ||||||||||||||||    
T  31177492 tttacctttcattttgttttattcttatatttgatatttcataaaattttgtgaagttcaacatatctaaagatgctcagattaaagctcatgtttg 31177588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 389 - 485
Target Start/End: Original strand, 31198103 - 31198199
Alignment:
Q  389 tttatcttttatttggttttattcttatacttgttattccataaaactttgtgaagtgaaacatgtctgaagatgcacaacttaaagctcatgtttg 485  Q
    |||| |||| |||| |||||||||||||| ||| |||| || |||| ||||||||||  ||||||||| ||||||| ||  ||||||||||||||||    
T  31198103 tttacctttcattttgttttattcttatatttgatatttcaaaaaattttgtgaagttcaacatgtctaaagatgctcagattaaagctcatgtttg 31198199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 230 - 318
Target Start/End: Original strand, 20447909 - 20447998
Alignment:
Q  230 ttacaccaacatattttttgtggtcgattatgtaataccaattttt-atgaccaatatgtaactaacgttatataatttatataaatata 318  Q
    ||||||| ||||||||||||  ||||||  ||||| |||||||||| ||| ||||||| |||||||| |||  |||||||||||||||||    
T  20447909 ttacaccgacatattttttggcgtcgatattgtaacaccaattttttatggccaatatataactaacattaagtaatttatataaatata 20447998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 72 - 167
Target Start/End: Complemental strand, 2289669 - 2289574
Alignment:
Q  72 aaaagcaaaaggagaatttgaagttattgaagaagatgaagacaattcaatttcactagctagctagataggttatgaaacttttttgtcggtgtt 167  Q
    |||| ||| ||||||||||||||| |||| ||||||||||||  ||||  | ||||||||||| || ||| | ||||| | |||||||||| ||||    
T  2289669 aaaaccaagaggagaatttgaagtaattgtagaagatgaagatgattccctatcactagctagttaaataagatatgacatttttttgtcgatgtt 2289574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 271 - 318
Target Start/End: Complemental strand, 34231396 - 34231349
Alignment:
Q  271 tttttatgaccaatatgtaactaacgttatataatttatataaatata 318  Q
    |||||||| ||||||| |||||||| |||| |||||||||||||||||    
T  34231396 tttttatggccaatatataactaacattatgtaatttatataaatata 34231349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 436 - 468
Target Start/End: Original strand, 1030864 - 1030896
Alignment:
Q  436 tttgtgaagtgaaacatgtctgaagatgcacaa 468  Q
    ||||||||||||||||||| |||||||||||||    
T  1030864 tttgtgaagtgaaacatgtgtgaagatgcacaa 1030896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 72 - 128
Target Start/End: Original strand, 20447798 - 20447854
Alignment:
Q  72 aaaagcaaaaggagaatttgaagttattgaagaagatgaagacaattcaatttcact 128  Q
    ||||||||||  |||||||||||||||||   ||||||||||  |||||||||||||    
T  20447798 aaaagcaaaacaagaatttgaagttattgggaaagatgaagaagattcaatttcact 20447854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 60; Significance: 2e-25; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 338 - 465
Target Start/End: Original strand, 19506886 - 19507013
Alignment:
Q  338 tattgctcacattttatataaatatatgtctccatttaaccaactacttattttatcttttatttggttttattcttatacttgttattccataaaactt 437  Q
    |||||||| ||||||||| |||||||||| || | |||   ||||| ||||||||| ||| ||||||||||||||| ||| || ||||||||||||  ||    
T  19506886 tattgctcgcattttataaaaatatatgtgtctaattatttaactatttattttatttttcatttggttttattctaataatttttattccataaacttt 19506985  T
Q  438 tgtgaagtgaaacatgtctgaagatgca 465  Q
    | ||||||||||||||||||||||||||    
T  19506986 tatgaagtgaaacatgtctgaagatgca 19507013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 378 - 467
Target Start/End: Original strand, 36342082 - 36342171
Alignment:
Q  378 caactacttattttatcttttatttggttttattcttatacttgttattccataaaactttgtgaagtgaaacatgtctgaagatgcaca 467  Q
    |||||| ||||||||||||| | |||||||||||   |||||||||||| ||||||  | ||||||||||||||||||||||||||||||    
T  36342082 caactatttattttatctttcacttggttttattaccatacttgttattacataaacttctgtgaagtgaaacatgtctgaagatgcaca 36342171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 80 - 171
Target Start/End: Original strand, 36341288 - 36341379
Alignment:
Q  80 aaggagaatttgaagttattgaagaagatgaagacaattcaatttcactagctagctagataggttatgaaacttttttgtcggtgttcatc 171  Q
    |||||||||||||||| ||| ||||||||||||| |||||  | ||| ||||||| | |||||| ||||| |||||||||||||||||||||    
T  36341288 aaggagaatttgaagtaattaaagaagatgaagataattccctatcattagctagtttgataggctatgatacttttttgtcggtgttcatc 36341379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 385 - 466
Target Start/End: Complemental strand, 20566721 - 20566640
Alignment:
Q  385 ttattttatcttttatttggttttattcttatacttgttattccataaaactttgtgaagtgaaacatgtctgaagatgcac 466  Q
    ||||||||||||| ||||||||||||| | |||  ||||||||||| ||  | |||| ||||||||||||||||||||||||    
T  20566721 ttattttatctttcatttggttttattataatatatgttattccatcaacttatgtgcagtgaaacatgtctgaagatgcac 20566640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 440 - 468
Target Start/End: Complemental strand, 9827588 - 9827560
Alignment:
Q  440 tgaagtgaaacatgtctgaagatgcacaa 468  Q
    |||||||||||||||||||||||||||||    
T  9827588 tgaagtgaaacatgtctgaagatgcacaa 9827560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 436 - 468
Target Start/End: Original strand, 35003999 - 35004031
Alignment:
Q  436 tttgtgaagtgaaacatgtctgaagatgcacaa 468  Q
    |||||||||||| ||||||||||||||||||||    
T  35003999 tttgtgaagtgatacatgtctgaagatgcacaa 35004031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 59; Significance: 9e-25; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 385 - 467
Target Start/End: Original strand, 12869121 - 12869203
Alignment:
Q  385 ttattttatcttttatttggttttattcttatacttgttattccataaaactttgtgaagtgaaacatgtctgaagatgcaca 467  Q
    ||||||||| ||||||||||||||||||| |||||||| ||||||| | | ||||||||||||||||||||||||||||||||    
T  12869121 ttattttattttttatttggttttattctcatacttgtcattccattatattttgtgaagtgaaacatgtctgaagatgcaca 12869203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 72 - 167
Target Start/End: Original strand, 26151763 - 26151858
Alignment:
Q  72 aaaagcaaaaggagaatttgaagttattgaagaagatgaagacaattcaatttcactagctagctagataggttatgaaacttttttgtcggtgtt 167  Q
    |||| ||||||||||||||||||| |||| ||||||||||||  || || | ||||||||||| |||||||||||||| |||||||||| ||||||    
T  26151763 aaaatcaaaaggagaatttgaagtaattggagaagatgaagatgatgcactatcactagctagttagataggttatgacacttttttgttggtgtt 26151858  T

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Target: chr7; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 406 - 465
Target Start/End: Original strand, 26152090 - 26152149
Alignment:
Q  406 tttattcttatacttgttattccataaaactttgtgaagtgaaacatgtctgaagatgca 465  Q
    |||||||| |||||||||||||||| | | ||||||||||||||||||||||||||||||    
T  26152090 tttattctgatacttgttattccattatattttgtgaagtgaaacatgtctgaagatgca 26152149  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 436 - 468
Target Start/End: Complemental strand, 2368665 - 2368633
Alignment:
Q  436 tttgtgaagtgaaacatgtctgaagatgcacaa 468  Q
    |||||||||||||||||||||||||||||||||    
T  2368665 tttgtgaagtgaaacatgtctgaagatgcacaa 2368633  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 438 - 483
Target Start/End: Complemental strand, 20904853 - 20904808
Alignment:
Q  438 tgtgaagtgaaacatgtctgaagatgcacaacttaaagctcatgtt 483  Q
    |||||||| |||||||||| ||||||||||| || |||||||||||    
T  20904853 tgtgaagttaaacatgtctaaagatgcacaaattgaagctcatgtt 20904808  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 440 - 468
Target Start/End: Original strand, 23942875 - 23942903
Alignment:
Q  440 tgaagtgaaacatgtctgaagatgcacaa 468  Q
    |||||||||||||||||||||||||||||    
T  23942875 tgaagtgaaacatgtctgaagatgcacaa 23942903  T

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Target: chr1 (Bit Score: 55; Significance: 2e-22; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 378 - 468
Target Start/End: Complemental strand, 38810696 - 38810606
Alignment:
Q  378 caactacttattttatcttttatttggttttattcttatacttgttattccataaaactttgtgaagtgaaacatgtctgaagatgcacaa 468  Q
    |||||| | ||||||||||| ||||||||||||||| |||||||||||| ||| | | | |||||||||||||||||||||||||||||||    
T  38810696 caactattgattttatctttcatttggttttattctcatacttgttatttcattatattgtgtgaagtgaaacatgtctgaagatgcacaa 38810606  T

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Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 238 - 326
Target Start/End: Original strand, 25140623 - 25140711
Alignment:
Q  238 acatattttttgtggtcgattatgtaataccaatttttatgaccaatatgtaactaacgttatataatttatataaatatacgactttt 326  Q
    |||||||||||||||| ||| ||||||  ||| |||||||  |||||||||||||||| || ||||| ||||||||||||| |||||||    
T  25140623 acatattttttgtggtagataatgtaacgccattttttattgccaatatgtaactaaccttttataaattatataaatatatgactttt 25140711  T

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Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 72 - 130
Target Start/End: Original strand, 40091285 - 40091343
Alignment:
Q  72 aaaagcaaaaggagaatttgaagttattgaagaagatgaagacaattcaatttcactag 130  Q
    ||||||||||| ||||||||||||||||||| ||||||||||  ||||||||| |||||    
T  40091285 aaaagcaaaagaagaatttgaagttattgaataagatgaagatgattcaattttactag 40091343  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 435 - 468
Target Start/End: Complemental strand, 30703975 - 30703942
Alignment:
Q  435 ctttgtgaagtgaaacatgtctgaagatgcacaa 468  Q
    ||||||||||||||||||||||||||||||||||    
T  30703975 ctttgtgaagtgaaacatgtctgaagatgcacaa 30703942  T

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Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 406 - 463
Target Start/End: Original strand, 40091835 - 40091891
Alignment:
Q  406 tttattcttatacttgttattccataaaactttgtgaagtgaaacatgtctgaagatg 463  Q
    |||||||| ||| |||||||||||| ||  ||||||||||||||||||||||||||||    
T  40091835 tttattctaata-ttgttattccatcaacttttgtgaagtgaaacatgtctgaagatg 40091891  T

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Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 436 - 468
Target Start/End: Original strand, 25818303 - 25818335
Alignment:
Q  436 tttgtgaagtgaaacatgtctgaagatgcacaa 468  Q
    |||||||||||||||||||||||||||||||||    
T  25818303 tttgtgaagtgaaacatgtctgaagatgcacaa 25818335  T

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Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 405 - 480
Target Start/End: Original strand, 25140810 - 25140885
Alignment:
Q  405 ttttattcttatacttgttattccataaaactttgtgaagtgaaacatgtctgaagatgcacaacttaaagctcat 480  Q
    ||||||||| ||| |||||||| ||||||  | | |||||| ||||||| ||||||||||||||  ||||||||||    
T  25140810 ttttattctaatatttgttatttcataaacttctatgaagttaaacatgactgaagatgcacaaactaaagctcat 25140885  T

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Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 82 - 113
Target Start/End: Complemental strand, 31431301 - 31431270
Alignment:
Q  82 ggagaatttgaagttattgaagaagatgaaga 113  Q
    ||||||||||||||||||||||||||||||||    
T  31431301 ggagaatttgaagttattgaagaagatgaaga 31431270  T

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Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 72 - 126
Target Start/End: Original strand, 25140503 - 25140557
Alignment:
Q  72 aaaagcaaaaggagaatttgaagttattgaagaagatgaagacaattcaatttca 126  Q
    ||||||||||| | ||||| ||||||||| ||||||||||||  |||||||||||    
T  25140503 aaaagcaaaagaaaaatttaaagttattgtagaagatgaagatgattcaatttca 25140557  T

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Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 72 - 128
Target Start/End: Original strand, 10164883 - 10164939
Alignment:
Q  72 aaaagcaaaaggagaatttgaagttattgaagaagatgaagacaattcaatttcact 128  Q
    ||||||||| | ||||||| ||||||||| |||||||| |||  |||||||||||||    
T  10164883 aaaagcaaaggaagaattttaagttattgcagaagatgtagatgattcaatttcact 10164939  T

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Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 436 - 468
Target Start/End: Original strand, 23942811 - 23942843
Alignment:
Q  436 tttgtgaagtgaaacatgtctgaagatgcacaa 468  Q
    ||||||||||||||||||||| |||||||||||    
T  23942811 tttgtgaagtgaaacatgtctcaagatgcacaa 23942843  T

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Target: scaffold0182 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 348 - 411
Target Start/End: Original strand, 23620 - 23683
Alignment:
Q  348 attttatataaatatatgtctccatttaaccaactacttattttatcttttatttggttttatt 411  Q
    ||||| |||||||||||||||||| |||| |||| | ||||||||||||| |||| ||||||||    
T  23620 attttgtataaatatatgtctccagttaatcaacaatttattttatctttaatttagttttatt 23683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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