View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2587_low_10 (Length: 439)
Name: NF2587_low_10
Description: NF2587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2587_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 173; Significance: 7e-93; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 173; E-Value: 7e-93
Query Start/End: Original strand, 44 - 298
Target Start/End: Complemental strand, 19492735 - 19492493
Alignment:
| Q |
44 |
ttgaaggagagagataaatagcttaaatgtgatacgttgttccaaaaaatattcgtgatattttgttaaagagaaaattgtgacacattatgttnnnnnn |
143 |
Q |
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| T |
19492735 |
ttgaaggagagagataaatagcttaaatgtgatactttgttccaaaaaatattcgtgatattttgttaaagagaaaattgtgacacgttatgttaaaaaa |
19492636 |
T |
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| Q |
144 |
ngtcaatatattcatttgtttgtcaagtaatctagtaactagaaattcacctttacaagatgaagtgggcatggacgaatccaagcatgtgataaatggg |
243 |
Q |
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| T |
19492635 |
agtcaatatattcatttgtttgtcaagtga------------aaattcatctttacaagatgaagtgggcatagacgaatccaagcatgtgataaatggg |
19492548 |
T |
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| Q |
244 |
gcagccgccaccccatcatatatgaatactatggcatcctatatttacatatggt |
298 |
Q |
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| T |
19492547 |
gcagccgccaccccatcatatatgaatactatggcatcctatatttacatatggt |
19492493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 296 - 424
Target Start/End: Complemental strand, 19481650 - 19481522
Alignment:
| Q |
296 |
ggtgtttgccaccccaacctattgtgttcataaagtatttgtcttagatgtcaataaaagaaaattctcaaaatataaaggatgtatccaatggatgatc |
395 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19481650 |
ggtgtttgccaccccaacctattgtgttcataaagtatttgtcttagatgtcaataaaagaaaattctcaaaatataaaggatgtatccaatggatgatc |
19481551 |
T |
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| Q |
396 |
acatattttaaagtaacgttagtatatat |
424 |
Q |
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| T |
19481550 |
acatattttaaagtaacgttagtatatat |
19481522 |
T |
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