View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2587_low_12 (Length: 432)
Name: NF2587_low_12
Description: NF2587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2587_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 341; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 45 - 416
Target Start/End: Complemental strand, 4505596 - 4505222
Alignment:
| Q |
45 |
gataaaaacatatttcagaatctttagcagtgatcagcaaatttctact---ctttgtaatttgaaactttttggtggcactttttgagttgcaatacta |
141 |
Q |
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| T |
4505596 |
gataaaaacatatttcagaatctttagcagtgatcagcaaatttctactactctttgtaatttgaaactttttggtggcactttttgagttgcaatacta |
4505497 |
T |
|
| Q |
142 |
tcaaagtttgggtcataataaagcatgacatatctactttaatataaagattgcttcttcatttggaaattccttcttttgcaaactaattaatagtaac |
241 |
Q |
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| T |
4505496 |
tcaaagtttgggtcataataaagcatggcatatctactttaatataaagattgcttcttcatttggaaattccttcttttgcaaactaattaatagtaac |
4505397 |
T |
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| Q |
242 |
atgatttttgattttgatgtatatcagaggagaaaataagcaccaactcagcaagagtagtagttggagtatgtttatttcttgtgtttgttataacctc |
341 |
Q |
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| T |
4505396 |
atgatatttgattttgatgtatatcagaggagaaaataagcaccaactcagcaagagtagtagttggagtatggttatttctcgtgtttgttataacctc |
4505297 |
T |
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| Q |
342 |
aagttacactgcaaatctttcatcattgcttactgtccaaaaattgaagtctgccagagacattgactggcttat |
416 |
Q |
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| T |
4505296 |
aagttacactgcaaatctttcatcattgcttactgtccaaaaattgaagtctgccagagacattgaatggcttat |
4505222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 185 - 415
Target Start/End: Complemental strand, 4492842 - 4492612
Alignment:
| Q |
185 |
ataaagattgcttcttcatttggaaattccttcttttgcaaactaattaatagtaacatgatttttgattttgatgtatatcagaggagaaaataagcac |
284 |
Q |
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| T |
4492842 |
ataaatattgcttcttcatttggaaattccttcttttgcaaactaattaatagtaacatgatatttgattttgatgtatatcagaggagaaaataaacag |
4492743 |
T |
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| Q |
285 |
caactcagcaagagtagtagttggagtatgtttatttcttgtgtttgttataacctcaagttacactgcaaatctttcatcattgcttactgtccaaaaa |
384 |
Q |
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|||| ||||||||||||||||||||||||| |||||||||||||||||| |||||||||| ||||| |||| |||||||||||||||||||||||||||| |
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| T |
4492742 |
caacacagcaagagtagtagttggagtatggttatttcttgtgtttgttctaacctcaagctacaccgcaagtctttcatcattgcttactgtccaaaaa |
4492643 |
T |
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| Q |
385 |
ttgaagtctgccagagacattgactggctta |
415 |
Q |
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|||| ||||| ||||| |||| ||||||| |
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| T |
4492642 |
ttgaggtctgatagagatgttgaatggctta |
4492612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 192 - 415
Target Start/End: Complemental strand, 4498858 - 4498635
Alignment:
| Q |
192 |
ttgcttcttcatttggaaattccttcttttgcaaactaattaatagtaacatgatttttgattttgatgtatatcagaggagaaaataagcaccaactca |
291 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || ||||||| |
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| T |
4498858 |
ttgcatcttcatttggaaattccttcttttgcaaactaattaatagtaacatgatatttgattttgatgtatatcagaggagaaaataaacagcaactca |
4498759 |
T |
|
| Q |
292 |
gcaagagtagtagttggagtatgtttatttcttgtgtttgttataacctcaagttacactgcaaatctttcatcattgcttactgtccaaaaattgaagt |
391 |
Q |
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||||||||||||||||||||||| |||||||||||||| ||| |||||||||| ||||| |||| |||||||||||||||||||||||||||||||| || |
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| T |
4498758 |
gcaagagtagtagttggagtatggttatttcttgtgttcgttctaacctcaagctacaccgcaagtctttcatcattgcttactgtccaaaaattgaggt |
4498659 |
T |
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| Q |
392 |
ctgccagagacattgactggctta |
415 |
Q |
| |
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||| ||||| |||| ||||||| |
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| T |
4498658 |
ctgatagagatgttgaatggctta |
4498635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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