View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2587_low_13 (Length: 421)
Name: NF2587_low_13
Description: NF2587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2587_low_13 |
 | |
|
| [»] chr8 (2 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 334; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 63 - 421
Target Start/End: Complemental strand, 34519898 - 34519538
Alignment:
| Q |
63 |
atcatgttgcatgtttttaagagatgtccacaagggcttgaccaaaccattaatttcttctatcctaataagcaaaaatgattaattttcttctattgtt |
162 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34519898 |
atcatgttgcatgttttgaagagatgtccacaagggcttgaccaaaccattaatttcttctatcctaataagcaaaaatgattaattttcttctattgtt |
34519799 |
T |
|
| Q |
163 |
t--gcttattttgaagcaaaacaaaggaccaatttcttctaaaagcataatcttgaaaatgaataaaaccagggaatgaattcatcaccaccaagaaaca |
260 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34519798 |
tttgcttattttgaagcaaaacaaaggaccaatttcttctaaaagcacaatcttgaaaatgaataaaaccagggaatgaattcatcaccaccaagaaaca |
34519699 |
T |
|
| Q |
261 |
gggcccagaccttcatgggctaatgatccctgtaaaatagagagacattatatcaatcttccatcaatgttcaatgcttgtttattaggattttaatcta |
360 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34519698 |
gggcccagaccttcatgagctaatgatccctgtaaaatagagagacattatatcaatcttccatcaatgttcaatgcttgtttattaggattttaatcta |
34519599 |
T |
|
| Q |
361 |
tcttctatacaaaacatattgatacggcaagtagttcaaacacattttctttaatcggttt |
421 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
34519598 |
tcttctatacaaaacatattgatatggcaagtagttcaaacacattttctttaatcggttt |
34519538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 203 - 301
Target Start/End: Complemental strand, 30739961 - 30739863
Alignment:
| Q |
203 |
aagcataatcttgaaaatgaataaaaccagggaatgaattcatcaccaccaagaaacagggcccagaccttcatgggctaatgatccctgtaaaataga |
301 |
Q |
| |
|
|||| ||||||||||||||||||||| | |||||||||||||| ||||||||||||||| |||| ||||||||| ||||||||||||||||||||| |
|
|
| T |
30739961 |
aagcgtaatcttgaaaatgaataaaagctgggaatgaattcattgccaccaagaaacaggtcccaaaccttcatgatataatgatccctgtaaaataga |
30739863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University