View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2587_low_15 (Length: 398)
Name: NF2587_low_15
Description: NF2587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2587_low_15 |
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Alignment Details
Target: chr7 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 18 - 393
Target Start/End: Original strand, 5533057 - 5533425
Alignment:
| Q |
18 |
caatcaaaatagtttttgacgcatctattacgtcaaaagttctttctctaatttaannnnnnnnnnnnaagccacctttgtcttaagtttaccatgatga |
117 |
Q |
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| T |
5533057 |
caatcaaaatagcttttgacgcatctattaagtcaaaagttctttctctaatttaattttttatctttaagccacttttgtcttaagtttaccatgatga |
5533156 |
T |
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| Q |
118 |
aaaatgaaaactactactattgaacttgtttaattgtgttatttacgactttttaaacgccggcgagctatgaaaaaattatcttgaagctgaaaagact |
217 |
Q |
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||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5533157 |
aaaatgaaaacta---ctattgaacttgtttaattgtgttattcacgactttttaaacgccggcgagctatgaaaaaattatcttgaagctgaaaagact |
5533253 |
T |
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| Q |
218 |
ttaggtgcttctttcaaacaaatattgatatctttattttcgaaatcgtatcattcattcatcatattcacatatatgac-tttaatattaattagatga |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| |
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| T |
5533254 |
ttaggtgcttctttcaaacaaatattgatatctttattttcgaaatcgtatcattcattcatcatattcacatatatgacttttaatattaattaaatga |
5533353 |
T |
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| Q |
317 |
tgagtacagtacatatccaactgagttttatgggtatcattgcatacaccatatactttgtctcttttcttttcact |
393 |
Q |
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|| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5533354 |
tg-----agtacatatccaactgagttctatgggtatcattgcatacaccatatactttgtctcttttcttttcact |
5533425 |
T |
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