View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2587_low_17 (Length: 386)
Name: NF2587_low_17
Description: NF2587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2587_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 10 - 368
Target Start/End: Original strand, 14260844 - 14261202
Alignment:
| Q |
10 |
acatcatcacctacaaatacaccaaaaccctaatcttcatttctcgtttctgcggcgaaaccagaaagagatcacaacccaacacacaacaatgacaacc |
109 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14260844 |
acatcatcacctacaaatacaccaaaaccctaattttcatttctcgtttctgcggcgaaaccagaaagagatcacaacccaacacacaacaatgacaacc |
14260943 |
T |
|
| Q |
110 |
cgattcaagaagaacaggaagaagcgcggccacgtcagtgccggtcacggtcgtatcggaaaacatcgcaagcatcccggaggtcgtggtaacgccggag |
209 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
14260944 |
cgattcaagaagaacaggaagaagcgcggccacgtcagtgccggtcacggtcgtatcggaaaacaccgcaagcatcccggaggtcgtggtaacgccggag |
14261043 |
T |
|
| Q |
210 |
gtatgcatcaccatcgcatcctcttcgacaagtaccatccaggttacttcggtaaagttggtatgcgttactttcacaagctccgtaacaaattctataa |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14261044 |
gtatgcatcaccatcgcatcctcttcgacaagtaccatccaggttacttcggtaaagttggtatgcgttactttcacaagctccgtaacaaattctataa |
14261143 |
T |
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| Q |
310 |
ccccattgtcaacatcgacaagatcgcttctttgattcctcaagatgttaaggagaaag |
368 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14261144 |
ccccattgtcaacatcgacaagatcgcttctttgattcctcaagatgttaaggagaaag |
14261202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 101 - 368
Target Start/End: Original strand, 34601565 - 34601832
Alignment:
| Q |
101 |
atgacaacccgattcaagaagaacaggaagaagcgcggccacgtcagtgccggtcacggtcgtatcggaaaacatcgcaagcatcccggaggtcgtggta |
200 |
Q |
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| T |
34601565 |
atgacgacccgcttcaagaagaacaggaagaagagaggtcacgtgagcgccggtcacggtcgtatcggaaagcatcgcaagcatcccggaggtcgtggta |
34601664 |
T |
|
| Q |
201 |
acgccggaggtatgcatcaccatcgcatcctcttcgacaagtaccatccaggttacttcggtaaagttggtatgcgttactttcacaagctccgtaacaa |
300 |
Q |
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|||||||||| ||||| |||||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||| |||||||||||||| |||||||| |
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| T |
34601665 |
acgccggaggaatgcaccaccatcgtatcctcttcgacaagtatcatccaggttacttcggtaaggttggtatgcgctactttcacaagcttcgtaacaa |
34601764 |
T |
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| Q |
301 |
attctataaccccattgtcaacatcgacaagatcgcttctttgattcctcaagatgttaaggagaaag |
368 |
Q |
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| T |
34601765 |
attctataaccctattgtcaacatcgacaagatcgcttctctcattccacaagatgtgaaggagaaag |
34601832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 101; Significance: 6e-50; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 100 - 304
Target Start/End: Original strand, 29101495 - 29101699
Alignment:
| Q |
100 |
aatgacaacccgattcaagaagaacaggaagaagcgcggccacgtcagtgccggtcacggtcgtatcggaaaacatcgcaagcatcccggaggtcgtggt |
199 |
Q |
| |
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|||||||||| | ||||||| ||| ||||||||||||||||||| || ||||| ||||| |||||||||||||| ||||| || || ||||| || || |
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| T |
29101495 |
aatgacaaccagcctcaagaaaaaccggaagaagcgcggccacgtaagcgccggccacggccgtatcggaaaacaccgcaaacaccctggaggccgagga |
29101594 |
T |
|
| Q |
200 |
aacgccggaggtatgcatcaccatcgcatcctcttcgacaagtaccatccaggttacttcggtaaagttggtatgcgttactttcacaagctccgtaaca |
299 |
Q |
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||||||||||||||||| || || |||||||||||||||||||| || || ||||||||||| ||||| |||||||||||||||||||| ||||| |||| |
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| T |
29101595 |
aacgccggaggtatgcaccatcaccgcatcctcttcgacaagtatcaccctggttacttcggcaaagtgggtatgcgttactttcacaaactccgcaaca |
29101694 |
T |
|
| Q |
300 |
aattc |
304 |
Q |
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||||| |
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| T |
29101695 |
aattc |
29101699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 102 - 256
Target Start/End: Original strand, 49425139 - 49425292
Alignment:
| Q |
102 |
tgacaacccgattcaagaagaacaggaagaagcgcggccacgtcagtgccggtcacggtcgtatcggaaaacatcgcaagcatcccggaggtcgtggtaa |
201 |
Q |
| |
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|||| ||||| || |||||||||||||||||| | | || | || ||||||||||||| ||||||||| |||||||||||| || || ||||||||| |
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| T |
49425139 |
tgacgacccgctttaagaagaacaggaagaagggagatcatgggagcgccggtcacggtcatatcggaaagcatcgcaagcat-ccaaagatcgtggtaa |
49425237 |
T |
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| Q |
202 |
cgccggaggtatgcatcaccatcgcatcctcttcgacaagtaccatccaggttac |
256 |
Q |
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|| || ||| ||| | || || || ||||||||||||||||| |||||||||||| |
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| T |
49425238 |
cgacgaaggaatgaaccatcaccgtatcctcttcgacaagtatcatccaggttac |
49425292 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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