View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2587_low_2 (Length: 659)

Name: NF2587_low_2
Description: NF2587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2587_low_2
NF2587_low_2
[»] chr1 (5 HSPs)
chr1 (18-482)||(26487402-26487861)
chr1 (18-483)||(44403583-44404042)
chr1 (558-654)||(26487932-26488028)
chr1 (587-654)||(26491281-26491348)
chr1 (587-648)||(26503718-26503779)
[»] chr2 (3 HSPs)
chr2 (18-448)||(4773423-4773852)
chr2 (193-470)||(2465539-2465816)
chr2 (18-237)||(36353765-36353978)
[»] chr3 (5 HSPs)
chr3 (189-483)||(2904043-2904337)
chr3 (141-414)||(50654488-50654769)
chr3 (90-150)||(2904339-2904398)
chr3 (136-313)||(41171152-41171329)
chr3 (167-236)||(19145523-19145592)
[»] chr5 (3 HSPs)
chr5 (175-287)||(2147909-2148022)
chr5 (320-481)||(2147684-2147845)
chr5 (79-233)||(16970170-16970324)
[»] chr7 (2 HSPs)
chr7 (18-226)||(47397018-47397222)
chr7 (118-224)||(38159560-38159666)
[»] chr4 (1 HSPs)
chr4 (169-240)||(34760249-34760320)
[»] chr8 (1 HSPs)
chr8 (169-230)||(9811907-9811968)


Alignment Details
Target: chr1 (Bit Score: 368; Significance: 0; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 18 - 482
Target Start/End: Original strand, 26487402 - 26487861
Alignment:
Q  18 gatggaagtgctttggcaaatctaggaaaagcgggttatggtggtctaattaattagcaagcatgacgacaattttcaacttggttttttcggaagtgtg 117  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||| |    ||||| |||| |||||| |||||||||||||||| |||||||    
T  26487402 gatggaagtgctttggcaaatctaggaaaagtgggttatggtggtctaattagt----aagcacgacggcaatttccaacttggttttttcgaaagtgtg 26487497  T
Q  118 gggatttctaatatccttcatgctgagattcaagctctctggattggaatcaagttgtgttgggaggcaggctataaaaaacttatgtgttactctgact 217  Q
    ||||| | |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  26487498 gggatctttaatatccttcatgctgagattcaagctctctggattggaattaagttgtgttgggaggcaggctataaaaaacttatgtgttactctgact 26487597  T
Q  218 ctcttcatgtggtgcaattggtgtcgacggacacgccacgtttccatcattatgcaaatatcttgaaacttatcgggaactaccttgctaaggatttgac 317  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  26487598 ctcttcatgtggtgcaattggtgtcgacggacacaccacgtttccatcattatgcaaatatcttgaaacttatcggaaactaccttgctaaggatttgac 26487697  T
Q  318 agttactatttaccatatccttcgagaaggaaattcatgtgcagacgttctcgctaagttgggagctaatggttcataacatcttgtcaaggtcaataaa 417  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| ||||||| ||    
T  26487698 agttactatttaccatatccttcgagaaggaaattcatgtgcagacgttctcgctaagttggga-ctaatggttcataatatcttgtcacggtcaatgaa 26487796  T
Q  418 tctcccttttatttatcatttgctttaatggacgatgccttaggtgtgtccttcccaaggaccta 482  Q
    ||||||| |||||||||||||| ||||||||||||| ||||||||||||||||||||| ||||||    
T  26487797 tctccctcttatttatcatttgttttaatggacgataccttaggtgtgtccttcccaaagaccta 26487861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 18 - 483
Target Start/End: Complemental strand, 44404042 - 44403583
Alignment:
Q  18 gatggaagtgctttggcaaatctaggaaaagcgggttatggtggtctaattaattagcaagcatgacgacaattttcaacttggttttttcggaagtgtg 117  Q
    ||||||||||||||| |||||  || |||||||||| ||||||||||||||| |    ||||| || | ||| ||||||||||||||||||| || | ||    
T  44404042 gatggaagtgctttgacaaattcagaaaaagcgggtgatggtggtctaattagt----aagcacgatggcaactttcaacttggttttttcgaaa-tatg 44403948  T
Q  118 gggatttctaatatccttcatgct-gagattcaagctctctggattggaatcaagttgtgttgggaggcaggctataaaaaacttatgtgttactctgac 216  Q
    ||||| |||||||||||||||||  ||||||| ||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| |||| ||||    
T  44403947 gggatctctaatatccttcatgccagagattctagctctctggattggaatcaaattgtgttgggaggcagactataaaaaacttatgtgctactatgac 44403848  T
Q  217 tctcttcatgtggtgcaattggtgtcgacggacacgccacgtttccatcattatgcaaatatcttgaaacttatcgggaactaccttgctaaggatttga 316  Q
    ||||||||||||||| |||||||||| | ||| || ||| ||||||||||  ||||||||||||||||||| ||| | ||||| ||||||||||||| ||    
T  44403847 tctcttcatgtggtgtaattggtgtcaaaggatactccaggtttccatcaccatgcaaatatcttgaaactcatccgaaactatcttgctaaggattgga 44403748  T
Q  317 cagttactatttaccatatccttcgagaaggaaattcatgtgcagacgttctcgctaagttgggagctaatggttcataacatcttgtcaaggtcaataa 416  Q
     | |||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| || ||||||| ||| | | |||||| ||| ||| ||| |    
T  44403747 -aattactatttaccatat-cttcgagaacgaaattcatgtgcagacgttctcgctaagtgggaagctaatagtttagaccatcttatcatggttaatga 44403650  T
Q  417 atctcccttttatttatcatttgctttaatggacgatgccttaggtgtgtccttcccaaggacctag 483  Q
    | ||||||  ||||||||||||| |||||||  ||||||||||| ||| ||||| |||| |||||||    
T  44403649 acctccctcctatttatcatttgttttaatgaccgatgccttagatgtatcctttccaatgacctag 44403583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 558 - 654
Target Start/End: Original strand, 26487932 - 26488028
Alignment:
Q  558 tcattgcatgtagatttggatgaacataaaaatttgtcgcaaatttggtttgggttcatgaagaggtggtgcttactttctttgcccctttgcttct 654  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||    
T  26487932 tcattgcatgtagatttggatgaacataaaaatttctcgcaaatttggtttgggttcatgaagaggtggtgcttactttctttgcctctttgtttct 26488028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 587 - 654
Target Start/End: Original strand, 26491281 - 26491348
Alignment:
Q  587 aaatttgtcgcaaatttggtttgggttcatgaagaggtggtgcttactttctttgcccctttgcttct 654  Q
    |||||| | |||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||    
T  26491281 aaatttcttgcaaatttggtttgggttcatgaagaggtggtgcttactttctttgccgctttgtttct 26491348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 587 - 648
Target Start/End: Original strand, 26503718 - 26503779
Alignment:
Q  587 aaatttgtcgcaaatttggtttgggttcatgaagaggtggtgcttactttctttgccccttt 648  Q
    |||||| |||| |||||||||||||| ||||||||||| ||| |||||||||||||| ||||    
T  26503718 aaatttctcgcgaatttggtttgggtgcatgaagaggtagtgtttactttctttgcctcttt 26503779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 157; Significance: 4e-83; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 157; E-Value: 4e-83
Query Start/End: Original strand, 18 - 448
Target Start/End: Original strand, 4773423 - 4773852
Alignment:
Q  18 gatggaagtgctttggcaaatctaggaaaagcgggttatggtggtctaattaattagcaagcatgacgacaattttcaacttggtttttt-cggaagtgt 116  Q
    |||| |||||||||| |  ||| | |||||| |||||||| ||||||||||  | ||  |||| || | || ||||||| |||||||||| || ||||||    
T  4773423 gatgaaagtgctttgacggatccaagaaaagtgggttatgatggtctaatttgtaag--agcacgatggcagttttcaatttggtttttttcgaaagtgt 4773520  T
Q  117 ggggatttctaatatccttcatgctgagattcaagctctctggattggaatcaagttgtgttgggaggcaggctataaaaaacttatgtgttactctgac 216  Q
    | |||| |||||||||| || | |||||||||||||||||| ||||||||||||||||||||||||||  ||||||||||||||||||||||||||| ||    
T  4773521 gaggatctctaatatccatcctactgagattcaagctctctagattggaatcaagttgtgttgggaggtcggctataaaaaacttatgtgttactctaac 4773620  T
Q  217 tctcttcatgtggtgcaattggtgtcgacggacacgccacgtttccatcattatgcaaatatcttgaaacttatcgggaactaccttgctaaggatttga 316  Q
    ||||||||||||| |||||||||||||| | ||||  | |||||||||||  |||||||||||||  || |  || | ||||| ||||||||||||| ||    
T  4773621 tctcttcatgtggggcaattggtgtcgaagaacacttctcgtttccatcaccatgcaaatatcttagaattcctctgaaactatcttgctaaggattgga 4773720  T
Q  317 cagttactatttaccatatccttcgagaaggaaattcatgtgcagacgttctcgctaagttgggagctaatggttcataacatcttgtcaaggtcaataa 416  Q
    | ||||||||| ||||||||||| ||||||||||||||||||||||||||||  |||||||||||| | || ||||||| ||| || |||  |||||| |    
T  4773721 cggttactattcaccatatcctttgagaaggaaattcatgtgcagacgttcttcctaagttgggagttgatagttcataccattttatcacagtcaatga 4773820  T
Q  417 atctcccttttatttatcatttgctttaatgg 448  Q
    | | |||| || |||||| |  ||||||||||    
T  4773821 acccccctcttgtttatcttccgctttaatgg 4773852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 193 - 470
Target Start/End: Complemental strand, 2465816 - 2465539
Alignment:
Q  193 aaaaaacttatgtgttactctgactctcttcatgtggtgcaattggtgtcgacggacacgccacgtttccatcattatgcaaatatcttgaaacttatcg 292  Q
    ||||||||||||||||||||||||| ||||||||||||| |||||||||||| ||| |   ||| ||||||||| ||||||||||||||| |||| |||     
T  2465816 aaaaaacttatgtgttactctgactatcttcatgtggtgtaattggtgtcgaaggagatttcacatttccatcactatgcaaatatcttggaactcatcc 2465717  T
Q  293 ggaactaccttgctaaggatttgacagttactatttaccatatccttcgagaaggaaattcatgtgcagacgttctcgctaagttgggagctaatggttc 392  Q
      |||||  |||||||||||| || | ||||| ||   ||||||| |||||||| ||||| ||||||||| |||||| ||||||||||||||||| ||||    
T  2465716 aaaactattttgctaaggattggaaacttactgttactcatatccctcgagaagaaaatttatgtgcagatgttctcactaagttgggagctaatagttc 2465617  T
Q  393 ataacatcttgtcaaggtcaataaatctcccttttatttatcatttgctttaatggacgatgccttaggtgtgtcctt 470  Q
    ||| |||||||||| ||||||| | ||||||| || |||||||| | ||||||||   ||| ||||||||||||||||    
T  2465616 ataccatcttgtcatggtcaatgagtctccctcttgtttatcatctactttaatgcgtgataccttaggtgtgtcctt 2465539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 18 - 237
Target Start/End: Complemental strand, 36353978 - 36353765
Alignment:
Q  18 gatggaagtgctttggcaaatctaggaaaagcgggttatggtggtctaattaattagcaagcatgacgacaattttcaacttggttttttcggaagtgtg 117  Q
    |||||| |||||||| |||||| || |||   |||||||||||||||||||  |    |||||  | |||| ||||||| ||| ||| || || || |||    
T  36353978 gatggaggtgctttgacaaatcgagaaaatatgggttatggtggtctaattcgt----aagcactatgacagttttcaatttgatttctttggtagagtg 36353883  T
Q  118 gggatttctaatatccttcatgctgagattcaagctctctggattggaatcaagttgtgttgggaggcaggctataaaaaacttatgtgttactctgact 217  Q
    ||||| |||||||||||||||||||||||| | ||||| | | ||||||||||||||||||||||||| | ||||| ||||||  ||||||||| ||| |    
T  36353882 gggatctctaatatccttcatgctgagatttaggctctttagtttggaatcaagttgtgttgggaggcggactatagaaaact--tgtgttactatgagt 36353785  T
Q  218 ctcttcatgtggtgcaattg 237  Q
    ||||||||||||||||||||    
T  36353784 ctcttcatgtggtgcaattg 36353765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 135; Significance: 5e-70; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 135; E-Value: 5e-70
Query Start/End: Original strand, 189 - 483
Target Start/End: Complemental strand, 2904337 - 2904043
Alignment:
Q  189 ctataaaaaacttatgtgttactctgactctcttcatgtggtgcaattggtgtcgacggacacgccacgtttccatcattatgcaaatatcttgaaactt 288  Q
    ||||||||||||||| ||||||| ||||||||||||| |||| || |||||||||| | ||||  ||||||||||||| ||||||||||||||| ||||     
T  2904337 ctataaaaaacttatatgttactttgactctcttcatatggtacatttggtgtcgaagaacacttcacgtttccatcactatgcaaatatcttggaactc 2904238  T
Q  289 atcgggaactaccttgctaaggatttgacagttactatttaccatatccttcgagaaggaaattcatgtgcagacgttctcgctaagttgggagctaatg 388  Q
    ||| ||||||| |||  |||||||| ||||||||||| | |||||| ||||| |||||||||||||| |||| ||||||||||||||||||||||||||     
T  2904237 atctggaactatcttagtaaggattggacagttactagtcaccatacccttcaagaaggaaattcatatgcaaacgttctcgctaagttgggagctaata 2904138  T
Q  389 gttcataacatcttgtcaaggtcaataaatctcccttttatttatcatttgctttaatggacgatgccttaggtgtgtccttcccaaggacctag 483  Q
     |||| | |||||| ||| |||||||     ||||  |||||||||||||||||||||||| |||||||||||||||||||| | || |||||||    
T  2904137 attcagaccatcttatcacggtcaatgggcttcccccttatttatcatttgctttaatggatgatgccttaggtgtgtcctttctaaagacctag 2904043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 141 - 414
Target Start/End: Complemental strand, 50654769 - 50654488
Alignment:
Q  141 tgagattcaagctctctggattggaatcaagttgtgttgggaggca--ggctataaaaaa------cttatgtgttactctgactctcttcatgtggtgc 232  Q
    |||| |||||||||||||||||||||||||||| ||||||||| ||  || |||||||||      ||||| |||||||||||||||||||||||| |||    
T  50654769 tgaggttcaagctctctggattggaatcaagttatgttgggagacacaggatataaaaaaaaaaaacttatttgttactctgactctcttcatgtgatgc 50654670  T
Q  233 aattggtgtcgacggacacgccacgtttccatcattatgcaaatatcttgaaacttatcgggaactaccttgctaaggatttgacagttactatttacca 332  Q
    ||||| ||||||  ||| | |||||||||||||| |||||||||||||||||||| ||| ||||||| | |||| ||| || ||||||||||||| | ||    
T  50654669 aattgatgtcgaatgactctccacgtttccatcactatgcaaatatcttgaaactcatccggaactatcctgcttagggttggacagttactattcatca 50654570  T
Q  333 tatccttcgagaaggaaattcatgtgcagacgttctcgctaagttgggagctaatggttcataacatcttgtcaaggtcaat 414  Q
    |||||| ||||||| ||||||||||||||||||||| |||||| || |||||| | ||||| | |||||||||| |||||||    
T  50654569 tatcctacgagaagaaaattcatgtgcagacgttcttgctaagctgagagctagtagttcagaccatcttgtcacggtcaat 50654488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 90 - 150
Target Start/End: Complemental strand, 2904398 - 2904339
Alignment:
Q  90 ttttcaacttggttttttcggaagtgtggggatttctaatatccttcatgctgagattcaa 150  Q
    |||||||||||||||||||| || ||||| ||| ||||||||||||| |||||||||||||    
T  2904398 ttttcaacttggttttttcgaaa-tgtggagatctctaatatccttcttgctgagattcaa 2904339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 136 - 313
Target Start/End: Original strand, 41171152 - 41171329
Alignment:
Q  136 catgctgagattcaagctctctggattggaatcaagttgtgttgggaggcaggctataaaaaacttatgtgttactctgactctcttcatgtggtgcaat 235  Q
    |||||||||||||||||  | | || ||| || ||||| |||||| |  |||| |||| ||| |||||||||| ||| ||||||||||||||||| || |    
T  41171152 catgctgagattcaagcgtttttgactggtataaagttatgttggaaaacaggttatagaaagcttatgtgtttctccgactctcttcatgtggtacagt 41171251  T
Q  236 tggtgtcgacggaca-cgccacgtttccatcattatgcaaatatcttgaaacttatcgggaactaccttgctaaggatt 313  Q
    |||||  ||  |||| | | | |||| ||||||||||||||| ||||| |||| |||  ||| || |||||||||||||    
T  41171252 tggtgatgaaagacatctcgaggttt-catcattatgcaaatctcttggaactcatccagaattatcttgctaaggatt 41171329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 167 - 236
Target Start/End: Complemental strand, 19145592 - 19145523
Alignment:
Q  167 tcaagttgtgttgggaggcaggctataaaaaacttatgtgttactctgactctcttcatgtggtgcaatt 236  Q
    ||||||||||||||||||  ||||||||||   ||||||||||  | |||||| ||||||||||||||||    
T  19145592 tcaagttgtgttgggaggttggctataaaatgattatgtgttatcccgactcttttcatgtggtgcaatt 19145523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 78; Significance: 5e-36; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 175 - 287
Target Start/End: Complemental strand, 2148022 - 2147909
Alignment:
Q  175 tgttgggaggcaggctataaaaaa-cttatgtgttactctgactctcttcatgtggtgcaattggtgtcgacggacacgccacgtttccatcattatgca 273  Q
    ||||||| |||||||||||||||| ||| |||||||||||||||||||||||||| ||||||||||||||| |||||| |||||||||||||| ||||||    
T  2148022 tgttgggcggcaggctataaaaaaacttgtgtgttactctgactctcttcatgtgatgcaattggtgtcgaaggacactccacgtttccatcactatgca 2147923  T
Q  274 aatatcttgaaact 287  Q
    ||||| ||||||||    
T  2147922 aatatgttgaaact 2147909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 320 - 481
Target Start/End: Complemental strand, 2147845 - 2147684
Alignment:
Q  320 ttactatttaccatatccttcgagaaggaaattcatgtgcagacgttctcgctaagttgggagctaatggttcataacatcttgtcaaggtcaataaatc 419  Q
    |||||||| ||||||||||||||||||||| |||||||||||||||||||  |||||||| || |||| ||||| | |||| | ||| ||||||| | ||    
T  2147845 ttactattcaccatatccttcgagaaggaatttcatgtgcagacgttctctttaagttggtagttaatagttcagaccatcctatcacggtcaatgagtc 2147746  T
Q  420 tcccttttatttatcatttgctttaatggacgatgccttaggtgtgtccttcccaaggacct 481  Q
    ||||  ||||||||||  |  ||||||||  |||| |||||||||||| || | ||||||||    
T  2147745 tcccccttatttatcagctcttttaatgggtgatgtcttaggtgtgtcatttctaaggacct 2147684  T

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Target: chr5; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 79 - 233
Target Start/End: Original strand, 16970170 - 16970324
Alignment:
Q  79 catgacgacaattttcaacttggttttttcggaagtgtggggatttctaatatccttcatgctgagattcaagctctctggattggaatcaagttgtgtt 178  Q
    ||||| || ||||||||||||||||| || || ||||| ||||| || |||||||| |||||||| ||||||||||| | ||   | || || || ||||    
T  16970170 catgatgaaaattttcaacttggtttctttggtagtgtagggatctcaaatatcctacatgctgaaattcaagctctattgaccagtataaatttttgtt 16970269  T
Q  179 gggaggcaggctataaaaaacttatgtgttactctgactctcttcatgtggtgca 233  Q
    |||| ||| | |||| ||| || || ||||||||||||||||||||||| |||||    
T  16970270 gggatgcatgatatagaaacctcatatgttactctgactctcttcatgtagtgca 16970324  T

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Target: chr7 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 18 - 226
Target Start/End: Complemental strand, 47397222 - 47397018
Alignment:
Q  18 gatggaagtgctttggcaaatctaggaaaagcgggttatggtggtctaattaattagcaagcatgacgacaattttcaacttggttttttcggaagtgtg 117  Q
    |||||||| || ||| |||||| |||||| ||  |||||||||||||||||  |    ||||| || || | |||||| |||||||| || || |||||     
T  47397222 gatggaagcgcgttgacaaatccaggaaaggcatgttatggtggtctaattcgt----aagcacgatgaaagttttcagcttggtttctttggtagtgta 47397127  T
Q  118 gggatttctaatatccttcatgctgagattcaagctctctggattggaatcaagttgtgttgggaggcaggctataaaaaacttatgtgttactctgact 217  Q
    || || || |||||||| |||||||| ||||||||||| | || | |  | |||||||||||||| ||||| |||| ||| || || |||||||| ||||    
T  47397126 ggtatctcaaatatcctacatgctgaaattcaagctctattgactagcgtaaagttgtgttgggatgcaggatatagaaagctcatatgttactccgact 47397027  T
Q  218 ctcttcatg 226  Q
    |||||||||    
T  47397026 ctcttcatg 47397018  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 118 - 224
Target Start/End: Complemental strand, 38159666 - 38159560
Alignment:
Q  118 gggatttctaatatccttcatgctgagattcaagctctctggattggaatcaagttgtgttgggaggcaggctataaaaaacttatgtgttactctgact 217  Q
    ||||| || |||||| | |||||||| ||||||||||| | || ||| || || ||||||||||| ||||| |||||||| || || || ||||  ||||    
T  38159666 gggatctcaaatatcatacatgctgaaattcaagctctattgactggtataaaattgtgttgggatgcaggatataaaaagctcatatgctacttcgact 38159567  T
Q  218 ctcttca 224  Q
    |||||||    
T  38159566 ctcttca 38159560  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 169 - 240
Target Start/End: Original strand, 34760249 - 34760320
Alignment:
Q  169 aagttgtgttgggaggcaggctataaaaaacttatgtgttactctgactctcttcatgtggtgcaattggtg 240  Q
    ||||| |||||||||||||  |||| ||| |||||||||| ||| ||||||||||||||||| || ||||||    
T  34760249 aagttatgttgggaggcagattatagaaagcttatgtgtttctccgactctcttcatgtggtacagttggtg 34760320  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 169 - 230
Target Start/End: Complemental strand, 9811968 - 9811907
Alignment:
Q  169 aagttgtgttgggaggcaggctataaaaaacttatgtgttactctgactctcttcatgtggt 230  Q
    ||||| |||||| |||||||  ||| |||||||||||||| || ||||||||||||| ||||    
T  9811968 aagttatgttggaaggcaggtcatagaaaacttatgtgtttctttgactctcttcatatggt 9811907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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