View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2587_low_20 (Length: 315)
Name: NF2587_low_20
Description: NF2587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2587_low_20 |
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Alignment Details
Target: chr6 (Bit Score: 281; Significance: 1e-157; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 20 - 308
Target Start/End: Original strand, 33909523 - 33909811
Alignment:
| Q |
20 |
gtttaacagggagagttcctagtgcatttgaaaattcggcatatgatagaagctttttgaacaattctggtttatgtgctgatacaccaaaattgaacct |
119 |
Q |
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| T |
33909523 |
gtttaacaggaagagttcctagtgcatttgaaaattcggcatatgatagaagctttttgaacaattctggtttatgtgctgatacaccaaaattgaacct |
33909622 |
T |
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| Q |
120 |
taccttatgcaattctaattccaacactcaaagtgaaagcaaagattcatctttatctcctgctttgattggaattttggtggtagtttcgatcttagtg |
219 |
Q |
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| T |
33909623 |
taccttgtgcaattctaattccaacactcaaagtgaaagcaaagattcatctttatctcctgctttgattggaattttggtggtagtttcgatcttagtg |
33909722 |
T |
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| Q |
220 |
gcttcattgatatcgtttgtgattatcaaactttacagtaaaagaaaacaaggatcggataactcatcatggaaactcacttcatttca |
308 |
Q |
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| T |
33909723 |
gcttcattgatatcgtttgtgattatcaaactttacagtaaaagaaaacaaggatcggataactcatcatggaaactcacttcatttca |
33909811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 21 - 119
Target Start/End: Original strand, 33885299 - 33885397
Alignment:
| Q |
21 |
tttaacagggagagttcctagtgcatttgaaaattcggcatatgatagaagctttttgaacaattctggtttatgtgctgatacaccaaaattgaacct |
119 |
Q |
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| T |
33885299 |
tttaacaggaagagttccaactgaatttgaaaattcagcttatgatagaagctttttgaacaattcagatttatgtgttgatacacaagcattgaacct |
33885397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 21 - 119
Target Start/End: Complemental strand, 33895973 - 33895875
Alignment:
| Q |
21 |
tttaacagggagagttcctagtgcatttgaaaattcggcatatgatagaagctttttgaacaattctggtttatgtgctgatacaccaaaattgaacct |
119 |
Q |
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| T |
33895973 |
tttaacgggaagagttccaattgaatttgaaaattcagcttatgatagaagctttttgaacaattctggtgtatgtgttggtacacaagcattgaacct |
33895875 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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