View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2587_low_24 (Length: 275)
Name: NF2587_low_24
Description: NF2587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2587_low_24 |
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Alignment Details
Target: chr6 (Bit Score: 247; Significance: 1e-137; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 259
Target Start/End: Complemental strand, 33909448 - 33909190
Alignment:
| Q |
1 |
agatcaagaacactaagatcaggtaaataaccgattgaagctggaatttctccacttagttgattttggctcaaatttagtgtcagtaatgacttccatg |
100 |
Q |
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| T |
33909448 |
agatcaagaacactaagatcaggtaaataaccgattgaagctggaatttctccacttagttgattttggctcaaatttagtgtcagtaatgaattccatg |
33909349 |
T |
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| Q |
101 |
atattacatcaaatggaagtggcccttttagctgattctgatcaagcgacaatttttgtagcttatgaagtgatgttatctcttgtggaatacttccatt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33909348 |
atattacatcaaatggaagtggcccttttagctgattctgatcaagcgacagtgtttgtagcttatgaagtgatgttatctcttgtggaatacttccatt |
33909249 |
T |
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| Q |
201 |
aagattattcttgcttgctatgaactcaaccacattagtccaagaagatactccaattg |
259 |
Q |
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| T |
33909248 |
aagattattcttgcttgctatgaactcaaccacattagtccaagaagatactccaattg |
33909190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 3 - 259
Target Start/End: Complemental strand, 33885215 - 33884959
Alignment:
| Q |
3 |
atcaagaacactaagatcaggtaaataaccgattgaagctggaatttctccacttagttgattttggctcaaatttagtgtcagtaatgacttccatgat |
102 |
Q |
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||||||||| ||||| |||||||| ||| |||||| |||||||| |||| | |||||||||||||||||||| | ||| || || ||||||||| |
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| T |
33885215 |
atcaagaacgctaagggaaggtaaatgaccaattgaaattggaatttgtccattaagttgattttggctcaaattcaaagtcgccaaggatttccatgat |
33885116 |
T |
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| Q |
103 |
attacatcaaatggaagtggcccttttagctgattctgatcaagcgacaatttttgtagcttatgaagtgatgttatctcttgtggaatacttccattaa |
202 |
Q |
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| T |
33885115 |
attacatctgatggaagtgacccttttagctggttttgatcaagcaacaatctttcaagattaggaagagttgttaactcttgaggaatacttccattaa |
33885016 |
T |
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| Q |
203 |
gattattcttgcttgctatgaactcaaccacattagtccaagaagatactccaattg |
259 |
Q |
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||| ||||||||||||||| |||||||||||| |||||||||||||||||||||||| |
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| T |
33885015 |
gataattcttgcttgctataaactcaaccacactagtccaagaagatactccaattg |
33884959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 3 - 259
Target Start/End: Original strand, 33896057 - 33896313
Alignment:
| Q |
3 |
atcaagaacactaagatcaggtaaataaccgattgaagctggaatttctccacttagttgattttggctcaaatttagtgtcagtaatgacttccatgat |
102 |
Q |
| |
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||||||||| ||||| |||||||| ||| |||||| ||||||||| | || | |||||||||||||||||||| | |||| || || ||||||||| |
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| T |
33896057 |
atcaagaacgctaagggaaggtaaatgaccaattgaaactggaatttgtacattaagttgattttggctcaaattcaaagtcaccaaggatttccatgat |
33896156 |
T |
|
| Q |
103 |
attacatcaaatggaagtggcccttttagctgattctgatcaagcgacaatttttgtagcttatgaagtgatgttatctcttgtggaatacttccattaa |
202 |
Q |
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||||||||||||||||||| ||||||||||||||| ||||||||| ||| | ||| || ||| |||| | ||||| |||||| |||||||||||||| | |
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| T |
33896157 |
attacatcaaatggaagtgacccttttagctgattttgatcaagcaacagtctttcaagattaggaagagttgttaactcttgaggaatacttccattga |
33896256 |
T |
|
| Q |
203 |
gattattcttgcttgctatgaactcaaccacattagtccaagaagatactccaattg |
259 |
Q |
| |
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||| ||||||||||||||| |||| ||| | |||||||||||||||||||||||||| |
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| T |
33896257 |
gataattcttgcttgctataaacttaactagattagtccaagaagatactccaattg |
33896313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 41 - 200
Target Start/End: Original strand, 24792125 - 24792284
Alignment:
| Q |
41 |
ctggaatttctccacttagttgattttggctcaaatttagtgtcagtaatgacttccatgatattacatcaaatggaagtggcccttttagctgattctg |
140 |
Q |
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||||||||| |||| ||||| || ||||||||||| || || | ||| |||||||||||||||| |||| |||||| | | || | | ||||||||| |
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| T |
24792125 |
ctggaatttgtccagaaagttggttctggctcaaattaagagttactaaggacttccatgatattatatcagatggaatttgaccagtgaactgattctg |
24792224 |
T |
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| Q |
141 |
atcaagcgacaatttttgtagcttatgaagtgatgttatctcttgtggaatacttccatt |
200 |
Q |
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||||||| | | || || || |||||||||||| ||||||||||||||||||||| |
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| T |
24792225 |
atcaagcaaaagagttgttaattttggaagtgatgttaactcttgtggaatacttccatt |
24792284 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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