View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2587_low_28 (Length: 254)
Name: NF2587_low_28
Description: NF2587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2587_low_28 |
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Alignment Details
Target: chr2 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 37091257 - 37091013
Alignment:
| Q |
1 |
cttccatcaatttcagaattcaaggtcataagatgaaactagttgaagtggaaggaatccacacactacaaaacacttatgattcccttgatattcattt |
100 |
Q |
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| T |
37091257 |
cttccatcaatttcagaattcaaggtcataagatgaaactagttgaagtggaaggaatccacacactacaaaacacttatgattcccttgatattcattt |
37091158 |
T |
|
| Q |
101 |
ggggcagagttactctgtattggttactgctgatcaaccaccacaagactattatatcgttgcttcaacacgatttacttctcaaatattaacagctacc |
200 |
Q |
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| T |
37091157 |
ggggcagagttactctgtattggttactgctgatcaaccaccacaagactattatatcgttgcttcaacacgatttacctctcaaatattaacagctacc |
37091058 |
T |
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| Q |
201 |
tccatacttcactacagtaactcggcaaaaactgtctctgctcct |
245 |
Q |
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| T |
37091057 |
tccatacttcactacagtaactcggcaaaaactgtttctggtcct |
37091013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 6 - 151
Target Start/End: Original strand, 17347191 - 17347336
Alignment:
| Q |
6 |
atcaatttcagaattcaaggtcataagatgaaactagttgaagtggaaggaatccacacactacaaaacacttatgattcccttgatattcatttggggc |
105 |
Q |
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| T |
17347191 |
atcaatttcagaatccaagggcataagataaagcttgttgaggtggaaggaagtcacactctgcaaaacacttatgactcacttgacattcatttggggc |
17347290 |
T |
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| Q |
106 |
agagttactctgtattggttactgctgatcaaccaccacaagacta |
151 |
Q |
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| T |
17347291 |
agacgtattctgtattggttactgctgatcaaccaccacatgacta |
17347336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 3 - 151
Target Start/End: Complemental strand, 17136628 - 17136480
Alignment:
| Q |
3 |
tccatcaatttcagaattcaaggtcataagatgaaactagttgaagtggaaggaatccacacactacaaaacacttatgattcccttgatattcatttgg |
102 |
Q |
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||||||||||||||||| ||||| ||||||||||| || ||||| |||||||||| ||||| | ||||||| ||| || || ||||| |||||||||| |
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| T |
17136628 |
tccatcaatttcagaatccaagggcataagatgaagcttgttgaggtggaaggaagtcacactgtgcaaaacatttacgactcacttgacattcatttgg |
17136529 |
T |
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| Q |
103 |
ggcagagttactctgtattggttactgctgatcaaccaccacaagacta |
151 |
Q |
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|||||| || |||||||||||||||||||||||||||||||| ||||| |
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| T |
17136528 |
ggcagacgtattctgtattggttactgctgatcaaccaccacatgacta |
17136480 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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