View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2587_low_3 (Length: 630)

Name: NF2587_low_3
Description: NF2587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2587_low_3
NF2587_low_3
[»] chr6 (16 HSPs)
chr6 (18-616)||(6471782-6472380)
chr6 (18-367)||(6506324-6506673)
chr6 (197-367)||(6529216-6529386)
chr6 (140-385)||(6466293-6466538)
chr6 (204-355)||(6519573-6519724)
chr6 (196-367)||(6460812-6460983)
chr6 (196-352)||(6497689-6497845)
chr6 (528-609)||(13034930-13035011)
chr6 (196-355)||(6515092-6515251)
chr6 (213-322)||(7204144-7204254)
chr6 (213-322)||(7238895-7239005)
chr6 (228-310)||(6458424-6458506)
chr6 (42-114)||(6461053-6461125)
chr6 (18-114)||(6497523-6497619)
chr6 (18-88)||(6529043-6529113)
chr6 (45-114)||(6519802-6519871)
[»] chr7 (3 HSPs)
chr7 (196-346)||(9664312-9664462)
chr7 (228-340)||(3752846-3752958)
chr7 (228-340)||(4047280-4047392)
[»] chr4 (1 HSPs)
chr4 (196-346)||(13535336-13535486)


Alignment Details
Target: chr6 (Bit Score: 511; Significance: 0; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 511; E-Value: 0
Query Start/End: Original strand, 18 - 616
Target Start/End: Complemental strand, 6472380 - 6471782
Alignment:
Q  18 cctctaacaaggaagaaactcatattggaagaaggcatatccaaggtgacactgagatcactataggaagagactatgtgtttttcattggaagtttgat 117  Q
    |||||||||||||||||||||||||| | ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6472380 cctctaacaaggaagaaactcatatttgtagaaggcatgtccaaggtgacactgagatcactataggaagagactatgtgtttttcattggaagtttgat 6472281  T
Q  118 tggttttctgttctatagaaattatggtgagatcagcattgaaaacttgatatatgaaagctgaattaaagtggtggaatggatatgaaactgaaagtga 217  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||| |||||||| || || || ||||| ||||||||    
T  6472280 tggttttctgttctatagaagttatggtgagatcagcattgaaaacttggtatatgaaagctgaattgaagtggtgaaaagggtaagaaacagaaagtga 6472181  T
Q  218 tgagtgcgaagatttgatgaggtaaggatgaatgtattcaggttggtcaccatttttgagaacaaagttttggaagaaagagtttgtagggaggggtgtg 317  Q
    |||||  || ||||||||||||||||||||||||||||||||||||||||||||||| || |||| ||||||||||||||||||||||||||||||||||    
T  6472180 tgagtttgatgatttgatgaggtaaggatgaatgtattcaggttggtcaccattttttaggacaatgttttggaagaaagagtttgtagggaggggtgtg 6472081  T
Q  318 gatagcaaatttggtgagaagaatttggaggggtcaggaagaacagtggattgtatctgtgggaatagaaaggaactattctctttgttgttaggcattg 417  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6472080 gatagcaaatttggtgagaagaatttggaggggtcagggagaacagtggattgtatctgtgggaatagaaaggaactattctctttgttgttaggcattg 6471981  T
Q  418 cagctgataggataatgatgaatgtcttaattattattgtggttttatagttttttaaggtatgtggtgagtgcaatttgtgtgttagattcttagtatt 517  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  6471980 cagctgataggataatgatgaatgtcttaattatgattgtggttttatagttttttaaggtatgtggtgagtgcaatttttgtgttagattcttagtatt 6471881  T
Q  518 ttcagcattggatactactcaatcttaggcaagttttagggtacacgataggctaatacttgaaaatttctcaaaacaccaatgacaattaacctaccc 616  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  6471880 ttcagcattagatactactcaatcttaggcaagttttagggtacacgataggctaatacttgaaaatttctcaaaacatcaatgacaattaacctaccc 6471782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 18 - 367
Target Start/End: Original strand, 6506324 - 6506673
Alignment:
Q  18 cctctaacaaggaagaaactcatattggaagaaggcatatccaaggtgacactgagatcactataggaagagactatgtgtttttcattggaagtttgat 117  Q
    ||||||||||| |||||||| | ||| |||||||| ||||| ||||| |||| |||||||||||| ||||||| |||||||||| |||| ||| |||| |    
T  6506324 cctctaacaagaaagaaactgagatttgaagaagggatatctaaggtaacaccgagatcactataagaagagattatgtgttttccattagaactttgtt 6506423  T
Q  118 tggttttctgttctatagaaattatggtgagatcagcattgaaaacttgatatatgaaagctgaatta-aagtggtggaatggatatgaaactgaaagtg 216  Q
    |||| |||||||   ||||| ||||||||||||||   | |||||||||  |||||| ||| |||||  ||| |   | | || ||||| || |||||||    
T  6506424 tggtattctgttgattagaagttatggtgagatcattgtggaaaacttgggatatgacagcagaattcgaagagcgagtaggg-tatgagacagaaagtg 6506522  T
Q  217 atgagtgcgaagatttgatgaggtaaggatgaatgtattcaggttggtcaccatttttgagaacaaagttttggaagaaagagtttgtagggaggggtgt 316  Q
    ||||||  || |||||||||||||||||||||| ||||||||||   |||||||| ||||||||||||||||||||||||||||||||||| ||||||||    
T  6506523 atgagtttgatgatttgatgaggtaaggatgaaagtattcaggtgcatcaccattgttgagaacaaagttttggaagaaagagtttgtaggcaggggtgt 6506622  T
Q  317 ggatagcaaatttggtgagaagaatttggaggggtcaggaagaacagtgga 367  Q
    |||||||| |||||| ||||||||||||||||||||||| || ||||||||    
T  6506623 ggatagcagatttggagagaagaatttggaggggtcagggaggacagtgga 6506673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 197 - 367
Target Start/End: Original strand, 6529216 - 6529386
Alignment:
Q  197 tggatatgaaactgaaagtgatgagtgcgaagatttgatgaggtaaggatgaatgtattcaggttggtcaccatttttgagaacaaagttttggaagaaa 296  Q
    |||||| ||||  |||||||||||||  |||||||||||||| || ||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  6529216 tggataggaaatagaaagtgatgagtctgaagatttgatgagatatggatgaatgtattcaggttggtcaccattgttgagaacaaagttttggaagaaa 6529315  T
Q  297 gagtttgtagggaggggtgtggatagcaaatttggtgagaagaatttggaggggtcaggaagaacagtgga 367  Q
    |||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| ||||||||    
T  6529316 gagtttgtagggaggggtgtggatagcagatttggagagaagaatttggaggggtcaggaaggacagtgga 6529386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 140 - 385
Target Start/End: Original strand, 6466293 - 6466538
Alignment:
Q  140 tatggtgagatcagcattgaaaacttgatatatgaaagctgaattaaagtggtggaatggatatgaaactgaaagtgatgagtgcgaagatttgatgagg 239  Q
    ||||||||||||||  ||||||||||| ||||||||||  || || |||    |  |||| || ||||  |||||||||||||  ||||||||||||||     
T  6466293 tatggtgagatcagggttgaaaacttggtatatgaaagaagagttgaagaaacgagatgggtaagaaagagaaagtgatgagtttgaagatttgatgaga 6466392  T
Q  240 taaggatgaatgtattcaggttggtcaccatttttgagaacaaagttttggaagaaagagtttgtagggaggggtgtggatagcaaatttggtgagaaga 339  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| |||||||    
T  6466393 tatggatgaatgtattcaggttggtcaccatttttgagaacaaagttttggaagaaagagtttgtggggaggggtgtggatagcagatttggagagaaga 6466492  T
Q  340 atttggaggggtcaggaagaacagtggattgtatctgtgggaatag 385  Q
    | || | ||||||||| || || ||||| ||  |||||||||||||    
T  6466493 agtttgtggggtcagggaggaccgtggaatgagtctgtgggaatag 6466538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 204 - 355
Target Start/End: Complemental strand, 6519724 - 6519573
Alignment:
Q  204 gaaactgaaagtgatgagtgcgaagatttgatgaggtaaggatgaatgtattcaggttggtcaccatttttgagaacaaagttttggaagaaagagtttg 303  Q
    ||||| |||||||||||||  || ||||| |||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  6519724 gaaacagaaagtgatgagtttgatgatttaatgaggtatggatgaatatattcaggttggtcaccgtttttgagaacaaagttttggaagaaagagtttg 6519625  T
Q  304 tagggaggggtgtggatagcaaatttggtgagaagaatttggaggggtcagg 355  Q
    ||||||||||| ||||||| |||||||| |||||||||||||||||||||||    
T  6519624 tagggaggggtttggatagtaaatttggagagaagaatttggaggggtcagg 6519573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 196 - 367
Target Start/End: Complemental strand, 6460983 - 6460812
Alignment:
Q  196 atggatatgaaactgaaagtgatgagtgcgaagatttgatgaggtaaggatgaatgtattcaggttggtcaccatttttgagaacaaagttttggaagaa 295  Q
    |||||||||| || ||||| |||||||  |||||| |||||||||||||||||| |||||| |||||||||||||| | |||||||||||||||||||||    
T  6460983 atggatatgagacagaaagagatgagttggaagatctgatgaggtaaggatgaaagtattccggttggtcaccattgtcgagaacaaagttttggaagaa 6460884  T
Q  296 agagtttgtagggaggggtgtggatagcaaatttggtgagaagaatttggaggggtcaggaagaacagtgga 367  Q
     |||||||||||||| ||| ||||||||| |||||  ||||||||||||||||||||||| || ||||||||    
T  6460883 ggagtttgtagggagtggtttggatagcagatttgaagagaagaatttggaggggtcagggaggacagtgga 6460812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 196 - 352
Target Start/End: Original strand, 6497689 - 6497845
Alignment:
Q  196 atggatatgaaactgaaagtgatgagtgcgaagatttgatgaggtaaggatgaatgtattcaggttggtcaccatttttgagaacaaagttttggaagaa 295  Q
    ||||||||||||| |||||||||||||  || ||||||||||||||||||||||  ||||||||||||||||| || |||||||||||||||||||||||    
T  6497689 atggatatgaaacagaaagtgatgagtctgatgatttgatgaggtaaggatgaaaatattcaggttggtcaccgttgttgagaacaaagttttggaagaa 6497788  T
Q  296 agagtttgtagggaggggtgtggatagcaaatttggtgagaagaatttggaggggtc 352  Q
    ||||||||| ||||||||| | ||||||| ||||   ||||||||||||||||||||    
T  6497789 agagtttgtggggaggggtttagatagcagatttttagagaagaatttggaggggtc 6497845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 528 - 609
Target Start/End: Complemental strand, 13035011 - 13034930
Alignment:
Q  528 gatactactcaatcttaggcaagttttagggtacacgataggctaatacttgaaaatttctcaaaacaccaatgacaattaa 609  Q
    ||||| |||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  13035011 gatacaactcaatcttaggcaagttttacggtacacgataggctaatacttaaaaatttctcaaaacaccaatgacaattaa 13034930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 196 - 355
Target Start/End: Complemental strand, 6515251 - 6515092
Alignment:
Q  196 atggatatgaaactgaaagtgatgagtgcgaagatttgatgaggtaaggatgaatgtattcaggttggtcaccatttttgagaacaaagttttggaagaa 295  Q
    |||| |||||||  |||||||||||||  |  ||| |||||||||||||||| ||||||||||||   ||||| | | |||||  |||||||||||||||    
T  6515251 atgggtatgaaaaagaaagtgatgagtttgttgatctgatgaggtaaggatggatgtattcaggtgtttcaccctctctgagagaaaagttttggaagaa 6515152  T
Q  296 agagtttgtagggaggggtgtggatagcaaatttggtgagaagaatttggaggggtcagg 355  Q
    ||||||||| ||||||||||| ||||| | |||||| |||||||| |||||||| |||||    
T  6515151 agagtttgtggggaggggtgtagatagaagatttggggagaagaacttggagggatcagg 6515092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 213 - 322
Target Start/End: Complemental strand, 7204254 - 7204144
Alignment:
Q  213 agtgatgagtgcgaagatttgatgaggtaaggatgaatgtattcaggttggtcaccatttttgagaacaaagttttggaagaaagagtttgtaggga-gg 311  Q
    |||| ||||| ||| ||||| |||||||| |||||||||||||||||||||||||||||  |||||||||||||||||||||||||  | || |||| ||    
T  7204254 agtggtgagttcgatgatttaatgaggtagggatgaatgtattcaggttggtcaccattgatgagaacaaagttttggaagaaagaaatagtggggaggg 7204155  T
Q  312 ggtgtggatag 322  Q
    |||||||||||    
T  7204154 ggtgtggatag 7204144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 213 - 322
Target Start/End: Complemental strand, 7239005 - 7238895
Alignment:
Q  213 agtgatgagtgcgaagatttgatgaggtaaggatgaatgtattcaggttggtcaccatttttgagaacaaagttttggaagaaagagtttgtaggga-gg 311  Q
    |||| ||||| ||| ||||| |||||||| |||||||||||||||||||||||||||||  |||||||||||||||||||||||||  | || |||| ||    
T  7239005 agtggtgagttcgatgatttaatgaggtagggatgaatgtattcaggttggtcaccattgatgagaacaaagttttggaagaaagaaatagtggggaggg 7238906  T
Q  312 ggtgtggatag 322  Q
    |||||||||||    
T  7238905 ggtgtggatag 7238895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 228 - 310
Target Start/End: Original strand, 6458424 - 6458506
Alignment:
Q  228 gatttgatgaggtaaggatgaatgtattcaggttggtcaccatttttgagaacaaagttttggaagaaagagtttgtagggag 310  Q
    ||||||||||||||||| |||||||| ||||||  |||||||||||  |||||||| |||||||||||||||||||| |||||    
T  6458424 gatttgatgaggtaagggtgaatgtactcaggtgtgtcaccattttgtagaacaaaattttggaagaaagagtttgttgggag 6458506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 42 - 114
Target Start/End: Complemental strand, 6461125 - 6461053
Alignment:
Q  42 ttggaagaaggcatatccaaggtgacactgagatcactataggaagagactatgtgtttttcattggaagttt 114  Q
    |||| |||||| ||||| ||||||||||||||||||||| ||||||||||||  |||||||||||||||||||    
T  6461125 ttggcagaagggatatctaaggtgacactgagatcactaaaggaagagactacatgtttttcattggaagttt 6461053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 18 - 114
Target Start/End: Original strand, 6497523 - 6497619
Alignment:
Q  18 cctctaacaaggaagaaactcatattggaagaaggcatatccaaggtgacactgagatcactataggaagagactatgtgtttttcattggaagttt 114  Q
    ||||| |||||||||||  | | ||| |||||||| ||||| |||||||||| |||||||||| | ||||| ||||  |||||||||||||||||||    
T  6497523 cctcttacaaggaagaaggtgagatttgaagaagggatatctaaggtgacaccgagatcactaaaagaagatactacatgtttttcattggaagttt 6497619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 88
Target Start/End: Original strand, 6529043 - 6529113
Alignment:
Q  18 cctctaacaaggaagaaactcatattggaagaaggcatatccaaggtgacactgagatcactataggaaga 88  Q
    ||||||||||| ||||||||||| ||||  ||||| || || || ||||||||||||||||||||||||||    
T  6529043 cctctaacaagaaagaaactcatgttggttgaaggaatgtctaacgtgacactgagatcactataggaaga 6529113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 45 - 114
Target Start/End: Complemental strand, 6519871 - 6519802
Alignment:
Q  45 gaagaaggcatatccaaggtgacactgagatcactataggaagagactatgtgtttttcattggaagttt 114  Q
    |||||||| || |||||||| |||||||| ||| | || ||||||| |||||||||||| ||||||||||    
T  6519871 gaagaagggatttccaaggtaacactgaggtcattgtaagaagagattatgtgtttttcgttggaagttt 6519802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 91; Significance: 9e-44; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 196 - 346
Target Start/End: Complemental strand, 9664462 - 9664312
Alignment:
Q  196 atggatatgaaactgaaagtgatgagtgcgaagatttgatgaggtaaggatgaatgtattcaggttggtcaccatttttgagaacaaagttttggaagaa 295  Q
    ||||||| ||||  ||||||||||||| ||| ||||||| ||| ||||| ||||||||||||  ||||||||||||||||||||||||||||||||||||    
T  9664462 atggatacgaaagagaaagtgatgagttcgacgatttgacgagataagggtgaatgtattcatattggtcaccatttttgagaacaaagttttggaagaa 9664363  T
Q  296 agagtttgtagggaggggtgtggatagcaaatttggtgagaagaatttgga 346  Q
    ||||||||||||||||||||| ||||| | |||||| |||||||| |||||    
T  9664362 agagtttgtagggaggggtgtagatagaagatttggagagaagaaattgga 9664312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 228 - 340
Target Start/End: Complemental strand, 3752958 - 3752846
Alignment:
Q  228 gatttgatgaggtaaggatgaatgtattcaggttggtcaccatttttgagaacaaagttttggaagaaagagtttgtagggaggggtgtggatagcaaat 327  Q
    ||||||||||||||||| |||||||||||||||  ||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| |  |    
T  3752958 gatttgatgaggtaagggtgaatgtattcaggtgtgtcaccattgtggagaacaaagttttggaagaaagagtttgtagggaggggtgtggatagtaggt 3752859  T
Q  328 ttggtgagaagaa 340  Q
    || ||||||||||    
T  3752858 tttgtgagaagaa 3752846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 228 - 340
Target Start/End: Original strand, 4047280 - 4047392
Alignment:
Q  228 gatttgatgaggtaaggatgaatgtattcaggttggtcaccatttttgagaacaaagttttggaagaaagagtttgtagggaggggtgtggatagcaaat 327  Q
    |||||||  |||||||| |||||||||||| |||| ||||||||||  |||||||| ||||||||||| |||||||||||||| ||||||||||| || |    
T  4047280 gatttgacaaggtaagggtgaatgtattcatgttgatcaccattttgtagaacaaaattttggaagaatgagtttgtagggagaggtgtggatagtaagt 4047379  T
Q  328 ttggtgagaagaa 340  Q
    || ||||||||||    
T  4047380 tttgtgagaagaa 4047392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 91; Significance: 9e-44; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 196 - 346
Target Start/End: Complemental strand, 13535486 - 13535336
Alignment:
Q  196 atggatatgaaactgaaagtgatgagtgcgaagatttgatgaggtaaggatgaatgtattcaggttggtcaccatttttgagaacaaagttttggaagaa 295  Q
    ||||||| ||||  ||||||||||||| ||| ||||||| ||| ||||| ||||||||||||  ||||||||||||||||||||||||||||||||||||    
T  13535486 atggatacgaaagagaaagtgatgagttcgacgatttgacgagataagggtgaatgtattcatattggtcaccatttttgagaacaaagttttggaagaa 13535387  T
Q  296 agagtttgtagggaggggtgtggatagcaaatttggtgagaagaatttgga 346  Q
    ||||||||||||||||||||| ||||| | |||||| |||||||| |||||    
T  13535386 agagtttgtagggaggggtgtagatagaagatttggagagaagaaattgga 13535336  T

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