View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2587_low_35 (Length: 239)
Name: NF2587_low_35
Description: NF2587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2587_low_35 |
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| [»] chr6 (2 HSPs) |
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| [»] scaffold0046 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 179; Significance: 1e-96; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 18 - 239
Target Start/End: Original strand, 28468670 - 28468886
Alignment:
| Q |
18 |
gtctgaatggagtgactgcacttgcatgtgtatacttcatttgagagtcatgatcacaatctttactcagctcaattgttgttgnnnnnnnnncttcttt |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| |
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| T |
28468670 |
gtctgaatggagtgactgcacttgcatgtgtatacttcatttgagagtcatgatcacaatctttactcagctcaattgttgctgttttt-----ttcttt |
28468764 |
T |
|
| Q |
118 |
agttgtaattctttgtgcagcatgattcattgaaatgtacagccatttgaaattcagtttatctttcattgtatgaagtggattcaagcaatattgtcgg |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28468765 |
ggttgtaattctttgtgcagcatgattcattgaaatgtacagccatttgaaattcagtttatctttcattgtatgaagtggattcaagcaatattgtcgg |
28468864 |
T |
|
| Q |
218 |
tataaatagcctgaattaatat |
239 |
Q |
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|||||||||||||||||||||| |
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| T |
28468865 |
tataaatagcctgaattaatat |
28468886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 18 - 239
Target Start/End: Complemental strand, 34735064 - 34734848
Alignment:
| Q |
18 |
gtctgaatggagtgactgcacttgcatgtgtatacttcatttgagagtcatgatcacaatctttactcagctcaattgttgttgnnnnnnnnncttcttt |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| |
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| T |
34735064 |
gtctgaatggagtgactgcacttgcatgtgtatacttcatttgagagtcatgatcacaatctttactcagctcaattgttgctgttttt-----ttcttt |
34734970 |
T |
|
| Q |
118 |
agttgtaattctttgtgcagcatgattcattgaaatgtacagccatttgaaattcagtttatctttcattgtatgaagtggattcaagcaatattgtcgg |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34734969 |
ggttgtaattctttgtgcagcatgattcattgaaatgtacagccatttgaaattcagtttatctttcattgtatgaagtggattcaagcaatattgtcgg |
34734870 |
T |
|
| Q |
218 |
tataaatagcctgaattaatat |
239 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
34734869 |
tataaatagcctgaattaatat |
34734848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0046 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: scaffold0046
Description:
Target: scaffold0046; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 18 - 239
Target Start/End: Complemental strand, 76370 - 76153
Alignment:
| Q |
18 |
gtctgaatggagtgactgcacttgcatgtgtatacttcatttgagagtcatgatcacaatctttactcagctcaattgttgttgnnnnnnnnncttcttt |
117 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| |
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| T |
76370 |
gtctgaatggagtgactgcacttgcatgtgtatacttcatttgagagtcatgatcacaatctttactcagctcaattgttgctgtttttt----ttcttt |
76275 |
T |
|
| Q |
118 |
agttgtaattctttgtgcagcatgattcattgaaatgtacagccatttgaaattcagtttatctttcattgtatgaagtggattcaagcaatattgtcgg |
217 |
Q |
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|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
76274 |
ggttgtaattctttgtgcagcatgattcattgaaatgtacggccatttgaaattcagtttatctttcattgtatgaagtggattcaagcaatattgtcgg |
76175 |
T |
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| Q |
218 |
tataaatagcctgaattaatat |
239 |
Q |
| |
|
|||||||||||||||||||||| |
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| T |
76174 |
tataaatagcctgaattaatat |
76153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 18 - 239
Target Start/End: Complemental strand, 29318953 - 29318737
Alignment:
| Q |
18 |
gtctgaatggagtgactgcacttgcatgtgtatacttcatttgagagtcatgatcacaatctttactcagctcaattgttgttgnnnnnnnnncttcttt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
29318953 |
gtctgaatggagtgactgcacttgcatgtgtatacttcatttgagagtcatgatcacaatctttactcagctcaattgttgttgttttt-----ttcttt |
29318859 |
T |
|
| Q |
118 |
agttgtaattctttgtgcagcatgattcattgaaatgtacagccatttgaaattcagtttatctttcattgtatgaagtggattcaagcaatattgtcgg |
217 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29318858 |
ggttgtaattctttgtgcaacatgattcattgaaatgtacagccatttaaaattcagtttatctttcattgtatgaagtggattcaagcaatattgtcgg |
29318759 |
T |
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| Q |
218 |
tataaatagcctgaattaatat |
239 |
Q |
| |
|
|||||||||||||||||||||| |
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| T |
29318758 |
tataaatagcctgaattaatat |
29318737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 18 - 239
Target Start/End: Complemental strand, 24967049 - 24966832
Alignment:
| Q |
18 |
gtctgaatggagtgactgcacttgcatgtgtatacttcatttgagagtcatgatcacaatctttactcagctcaattgttgttgnnnnnnnnncttcttt |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| |
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| T |
24967049 |
gtctgaatggagtgactgcacttgcatgtgtatacttcatttgagagtcatgatcacaatctttactcagctcaattgttgctgtttttt----ttcttt |
24966954 |
T |
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| Q |
118 |
agttgtaattctttgtgcagcatgattcattgaaatgtacagccatttgaaattcagtttatctttcattgtatgaagtggattcaagcaatattgtcgg |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24966953 |
ggttgtaattctttgtgcagcatgattcattgaaatgtacggccatttgaaattcagtttatctttcattgtatgaagtggattcaagcaatattgtcgg |
24966854 |
T |
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| Q |
218 |
tataaatagcctgaattaatat |
239 |
Q |
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|
|||||||||||||||||||||| |
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|
| T |
24966853 |
tataaatagcctgaattaatat |
24966832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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