View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2587_low_39 (Length: 231)

Name: NF2587_low_39
Description: NF2587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2587_low_39
NF2587_low_39
[»] chr4 (13 HSPs)
chr4 (17-200)||(48831038-48831222)
chr4 (196-231)||(13019268-13019303)
chr4 (194-231)||(10045949-10045986)
chr4 (199-231)||(7666481-7666513)
chr4 (195-231)||(11159703-11159739)
chr4 (199-231)||(17262368-17262400)
chr4 (199-231)||(17266030-17266062)
chr4 (195-231)||(21537160-21537196)
chr4 (199-231)||(27247142-27247174)
chr4 (195-231)||(31844070-31844106)
chr4 (199-231)||(34363101-34363133)
chr4 (199-231)||(35364194-35364226)
chr4 (199-231)||(43821717-43821749)
[»] chr8 (16 HSPs)
chr8 (189-231)||(2321800-2321842)
chr8 (196-231)||(414662-414697)
chr8 (197-231)||(20814024-20814058)
chr8 (198-231)||(4167483-4167516)
chr8 (198-231)||(40918657-40918690)
chr8 (199-231)||(4107131-4107163)
chr8 (195-231)||(6107400-6107436)
chr8 (199-231)||(6641881-6641913)
chr8 (199-231)||(7151125-7151157)
chr8 (199-231)||(18531116-18531148)
chr8 (199-231)||(20095970-20096002)
chr8 (199-231)||(20283958-20283990)
chr8 (199-231)||(21070586-21070618)
chr8 (199-231)||(23233779-23233811)
chr8 (199-231)||(31190641-31190673)
chr8 (199-231)||(39515556-39515588)
[»] chr2 (9 HSPs)
chr2 (191-231)||(1466800-1466840)
chr2 (192-231)||(17798839-17798878)
chr2 (191-231)||(38731269-38731309)
chr2 (197-231)||(1375042-1375076)
chr2 (197-231)||(21552537-21552571)
chr2 (199-231)||(22194731-22194763)
chr2 (199-231)||(34850940-34850972)
chr2 (199-231)||(36987410-36987442)
chr2 (199-231)||(39642727-39642759)
[»] chr1 (19 HSPs)
chr1 (142-184)||(18282337-18282379)
chr1 (191-231)||(9058156-9058196)
chr1 (196-231)||(26434973-26435008)
chr1 (197-231)||(23793065-23793099)
chr1 (198-231)||(22075634-22075667)
chr1 (199-231)||(2371175-2371207)
chr1 (199-231)||(2371460-2371492)
chr1 (199-231)||(3263998-3264030)
chr1 (199-231)||(6182980-6183012)
chr1 (199-231)||(6183265-6183297)
chr1 (199-231)||(6491699-6491731)
chr1 (199-231)||(13791858-13791890)
chr1 (195-231)||(18590113-18590149)
chr1 (199-231)||(28503419-28503451)
chr1 (199-231)||(30294868-30294900)
chr1 (199-231)||(32341493-32341525)
chr1 (199-231)||(38622686-38622718)
chr1 (199-231)||(42407168-42407200)
chr1 (199-231)||(52149797-52149829)
[»] chr3 (16 HSPs)
chr3 (196-231)||(44184254-44184289)
chr3 (197-231)||(20982276-20982310)
chr3 (194-231)||(41282130-41282167)
chr3 (199-231)||(2118997-2119029)
chr3 (199-231)||(3212435-3212467)
chr3 (199-231)||(5577216-5577248)
chr3 (195-231)||(8313943-8313979)
chr3 (199-231)||(17483559-17483591)
chr3 (199-231)||(17483841-17483873)
chr3 (199-231)||(25053867-25053899)
chr3 (199-231)||(27857418-27857450)
chr3 (199-231)||(27984137-27984169)
chr3 (199-231)||(45760516-45760548)
chr3 (199-231)||(47530337-47530369)
chr3 (199-231)||(51213305-51213337)
chr3 (199-231)||(53192396-53192428)
[»] chr7 (10 HSPs)
chr7 (198-231)||(388184-388217)
chr7 (190-231)||(11900039-11900080)
chr7 (194-231)||(18295845-18295882)
chr7 (194-231)||(30141203-30141240)
chr7 (199-231)||(10319176-10319208)
chr7 (199-231)||(10385732-10385764)
chr7 (199-231)||(19233602-19233634)
chr7 (199-231)||(30699307-30699339)
chr7 (199-231)||(38445689-38445721)
chr7 (199-231)||(39976727-39976759)
[»] chr5 (5 HSPs)
chr5 (198-231)||(8339956-8339989)
chr5 (199-231)||(23502411-23502443)
chr5 (199-231)||(26323658-26323690)
chr5 (199-231)||(34169071-34169103)
chr5 (199-231)||(42739870-42739902)
[»] scaffold0213 (1 HSPs)
scaffold0213 (199-231)||(21330-21362)
[»] scaffold0121 (2 HSPs)
scaffold0121 (199-231)||(22293-22325)
scaffold0121 (199-231)||(22559-22591)
[»] chr6 (5 HSPs)
chr6 (199-231)||(1814974-1815006)
chr6 (199-231)||(10977656-10977688)
chr6 (199-231)||(23883371-23883403)
chr6 (199-231)||(28930747-28930779)
chr6 (199-231)||(34705659-34705691)


Alignment Details
Target: chr4 (Bit Score: 141; Significance: 4e-74; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 17 - 200
Target Start/End: Original strand, 48831038 - 48831222
Alignment:
Q  17 gcactcaccactaaaacaaacaggagc-taagtctctttgtaaaatctaaaaaataatcattcatgatcaaatctcattttgagtatatccaataattta 115  Q
    ||||||||| ||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||  ||||||||    
T  48831038 gcactcaccgctaaaacaaacaggagcctaagtctctttgtaaaatctaaaaagtaatcattcatgatcaaatctcattttgagtatatcttataattta 48831137  T
Q  116 tgggttaagatcttctccattttttcattatcaaagtaataaaaatataaatacaataatatgatatttagtgtgtttaattatt 200  Q
     |||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||    
T  48831138 cgggttaagatcttctccatttttttattatcaaagttataaaaatataaatacaataatatgatatttaatgtgtctaattatt 48831222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 196 - 231
Target Start/End: Original strand, 13019268 - 13019303
Alignment:
Q  196 ttattggcttaattgcacgtttggacccctatcttt 231  Q
    |||||||||||||||||| |||||||||||||||||    
T  13019268 ttattggcttaattgcacttttggacccctatcttt 13019303  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 194 - 231
Target Start/End: Original strand, 10045949 - 10045986
Alignment:
Q  194 aattattggcttaattgcacgtttggacccctatcttt 231  Q
    |||| ||||||||||||||| |||||||||||||||||    
T  10045949 aatttttggcttaattgcacttttggacccctatcttt 10045986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 231
Target Start/End: Complemental strand, 7666513 - 7666481
Alignment:
Q  199 ttggcttaattgcacgtttggacccctatcttt 231  Q
    ||||||||||||||| |||||||||||||||||    
T  7666513 ttggcttaattgcacttttggacccctatcttt 7666481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 195 - 231
Target Start/End: Complemental strand, 11159739 - 11159703
Alignment:
Q  195 attattggcttaattgcacgtttggacccctatcttt 231  Q
    |||| |||||||||||||| |||||||||||||||||    
T  11159739 attaatggcttaattgcacttttggacccctatcttt 11159703  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 231
Target Start/End: Complemental strand, 17262400 - 17262368
Alignment:
Q  199 ttggcttaattgcacgtttggacccctatcttt 231  Q
    ||||||||||||||| |||||||||||||||||    
T  17262400 ttggcttaattgcacttttggacccctatcttt 17262368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 231
Target Start/End: Complemental strand, 17266062 - 17266030
Alignment:
Q  199 ttggcttaattgcacgtttggacccctatcttt 231  Q
    ||||||||||||||| |||||||||||||||||    
T  17266062 ttggcttaattgcacttttggacccctatcttt 17266030  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 195 - 231
Target Start/End: Complemental strand, 21537196 - 21537160
Alignment:
Q  195 attattggcttaattgcacgtttggacccctatcttt 231  Q
    ||||| ||||||||||||| |||||||||||||||||    
T  21537196 attataggcttaattgcacttttggacccctatcttt 21537160  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 231
Target Start/End: Complemental strand, 27247174 - 27247142
Alignment:
Q  199 ttggcttaattgcacgtttggacccctatcttt 231  Q
    ||||||||||||||| |||||||||||||||||    
T  27247174 ttggcttaattgcacttttggacccctatcttt 27247142  T

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Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 195 - 231
Target Start/End: Complemental strand, 31844106 - 31844070
Alignment:
Q  195 attattggcttaattgcacgtttggacccctatcttt 231  Q
    |||||| |||||||||||| |||||||||||||||||    
T  31844106 attattagcttaattgcacttttggacccctatcttt 31844070  T

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Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 231
Target Start/End: Complemental strand, 34363133 - 34363101
Alignment:
Q  199 ttggcttaattgcacgtttggacccctatcttt 231  Q
    ||||||||||||||| |||||||||||||||||    
T  34363133 ttggcttaattgcacttttggacccctatcttt 34363101  T

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Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 231
Target Start/End: Original strand, 35364194 - 35364226
Alignment:
Q  199 ttggcttaattgcacgtttggacccctatcttt 231  Q
    ||||||||||||||| |||||||||||||||||    
T  35364194 ttggcttaattgcacttttggacccctatcttt 35364226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 231
Target Start/End: Original strand, 43821717 - 43821749
Alignment:
Q  199 ttggcttaattgcacgtttggacccctatcttt 231  Q
    ||||||||||||||| |||||||||||||||||    
T  43821717 ttggcttaattgcacttttggacccctatcttt 43821749  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 189 - 231
Target Start/End: Complemental strand, 2321842 - 2321800
Alignment:
Q  189 tgtttaattattggcttaattgcacgtttggacccctatcttt 231  Q
    ||||||||||||||||||||||||| |||||||||||||||||    
T  2321842 tgtttaattattggcttaattgcacttttggacccctatcttt 2321800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 196 - 231
Target Start/End: Original strand, 414662 - 414697
Alignment:
Q  196 ttattggcttaattgcacgtttggacccctatcttt 231  Q
    |||||||||||||||||| |||||||||||||||||    
T  414662 ttattggcttaattgcacttttggacccctatcttt 414697  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 231
Target Start/End: Complemental strand, 20814058 - 20814024
Alignment:
Q  197 tattggcttaattgcacgtttggacccctatcttt 231  Q
    ||||||||||||||||| |||||||||||||||||    
T  20814058 tattggcttaattgcacttttggacccctatcttt 20814024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 198 - 231
Target Start/End: Complemental strand, 4167516 - 4167483
Alignment:
Q  198 attggcttaattgcacgtttggacccctatcttt 231  Q
    |||||||||||||||| |||||||||||||||||    
T  4167516 attggcttaattgcacttttggacccctatcttt 4167483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 198 - 231
Target Start/End: Complemental strand, 40918690 - 40918657
Alignment:
Q  198 attggcttaattgcacgtttggacccctatcttt 231  Q
    |||||||||||||||| |||||||||||||||||    
T  40918690 attggcttaattgcacttttggacccctatcttt 40918657  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 231
Target Start/End: Complemental strand, 4107163 - 4107131
Alignment:
Q  199 ttggcttaattgcacgtttggacccctatcttt 231  Q
    ||||||||||||||| |||||||||||||||||    
T  4107163 ttggcttaattgcacttttggacccctatcttt 4107131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 195 - 231
Target Start/End: Complemental strand, 6107436 - 6107400
Alignment:
Q  195 attattggcttaattgcacgtttggacccctatcttt 231  Q
    |||||| |||||||||||| |||||||||||||||||    
T  6107436 attattagcttaattgcacttttggacccctatcttt 6107400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 231
Target Start/End: Complemental strand, 6641913 - 6641881
Alignment:
Q  199 ttggcttaattgcacgtttggacccctatcttt 231  Q
    ||||||||||||||| |||||||||||||||||    
T  6641913 ttggcttaattgcacttttggacccctatcttt 6641881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 231
Target Start/End: Complemental strand, 7151157 - 7151125
Alignment:
Q  199 ttggcttaattgcacgtttggacccctatcttt 231  Q
    ||||||||||||||| |||||||||||||||||    
T  7151157 ttggcttaattgcacttttggacccctatcttt 7151125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 231
Target Start/End: Complemental strand, 18531148 - 18531116
Alignment:
Q  199 ttggcttaattgcacgtttggacccctatcttt 231  Q
    ||||||||||||||| |||||||||||||||||    
T  18531148 ttggcttaattgcacttttggacccctatcttt 18531116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 231
Target Start/End: Complemental strand, 20096002 - 20095970
Alignment:
Q  199 ttggcttaattgcacgtttggacccctatcttt 231  Q
    ||||||||||||||| |||||||||||||||||    
T  20096002 ttggcttaattgcacttttggacccctatcttt 20095970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 231
Target Start/End: Complemental strand, 20283990 - 20283958
Alignment:
Q  199 ttggcttaattgcacgtttggacccctatcttt 231  Q
    ||||||||||||||| |||||||||||||||||    
T  20283990 ttggcttaattgcacttttggacccctatcttt 20283958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 231
Target Start/End: Complemental strand, 21070618 - 21070586
Alignment:
Q  199 ttggcttaattgcacgtttggacccctatcttt 231  Q
    ||||||||||||||| |||||||||||||||||    
T  21070618 ttggcttaattgcacttttggacccctatcttt 21070586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 231
Target Start/End: Original strand, 23233779 - 23233811
Alignment:
Q  199 ttggcttaattgcacgtttggacccctatcttt 231  Q
    ||||||||||||||| |||||||||||||||||    
T  23233779 ttggcttaattgcacttttggacccctatcttt 23233811  T

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Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 231
Target Start/End: Original strand, 31190641 - 31190673
Alignment:
Q  199 ttggcttaattgcacgtttggacccctatcttt 231  Q
    ||||||||||||||| |||||||||||||||||    
T  31190641 ttggcttaattgcacttttggacccctatcttt 31190673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 231
Target Start/End: Original strand, 39515556 - 39515588
Alignment:
Q  199 ttggcttaattgcacgtttggacccctatcttt 231  Q
    ||||||||||||||| |||||||||||||||||    
T  39515556 ttggcttaattgcacttttggacccctatcttt 39515588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000005; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 191 - 231
Target Start/End: Original strand, 1466800 - 1466840
Alignment:
Q  191 tttaattattggcttaattgcacgtttggacccctatcttt 231  Q
    ||||||||||||||||||||||| |||||||||||||||||    
T  1466800 tttaattattggcttaattgcacttttggacccctatcttt 1466840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 192 - 231
Target Start/End: Original strand, 17798839 - 17798878
Alignment:
Q  192 ttaattattggcttaattgcacgtttggacccctatcttt 231  Q
    |||||||||||||||||||||| |||||||||||||||||    
T  17798839 ttaattattggcttaattgcacttttggacccctatcttt 17798878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 191 - 231
Target Start/End: Original strand, 38731269 - 38731309
Alignment:
Q  191 tttaattattggcttaattgcacgtttggacccctatcttt 231  Q
    |||||||| |||||||||||||| |||||||||||||||||    
T  38731269 tttaattaatggcttaattgcacttttggacccctatcttt 38731309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 231
Target Start/End: Original strand, 1375042 - 1375076
Alignment:
Q  197 tattggcttaattgcacgtttggacccctatcttt 231  Q
    ||||||||||||||||| |||||||||||||||||    
T  1375042 tattggcttaattgcacttttggacccctatcttt 1375076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 231
Target Start/End: Original strand, 21552537 - 21552571
Alignment:
Q  197 tattggcttaattgcacgtttggacccctatcttt 231  Q
    ||||||||||||||||| |||||||||||||||||    
T  21552537 tattggcttaattgcacttttggacccctatcttt 21552571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 231
Target Start/End: Complemental strand, 22194763 - 22194731
Alignment:
Q  199 ttggcttaattgcacgtttggacccctatcttt 231  Q
    ||||||||||||||| |||||||||||||||||    
T  22194763 ttggcttaattgcacttttggacccctatcttt 22194731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 231
Target Start/End: Complemental strand, 34850972 - 34850940
Alignment:
Q  199 ttggcttaattgcacgtttggacccctatcttt 231  Q
    ||||||||||||||| |||||||||||||||||    
T  34850972 ttggcttaattgcacttttggacccctatcttt 34850940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 231
Target Start/End: Original strand, 36987410 - 36987442
Alignment:
Q  199 ttggcttaattgcacgtttggacccctatcttt 231  Q
    ||||||||||||||| |||||||||||||||||    
T  36987410 ttggcttaattgcacttttggacccctatcttt 36987442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 231
Target Start/End: Original strand, 39642727 - 39642759
Alignment:
Q  199 ttggcttaattgcacgtttggacccctatcttt 231  Q
    ||||||||||||||| |||||||||||||||||    
T  39642727 ttggcttaattgcacttttggacccctatcttt 39642759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.00000000008; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 142 - 184
Target Start/End: Original strand, 18282337 - 18282379
Alignment:
Q  142 attatcaaagtaataaaaatataaatacaataatatgatattt 184  Q
    |||||||||||  ||||||||||||||||||||||||||||||    
T  18282337 attatcaaagttttaaaaatataaatacaataatatgatattt 18282379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 191 - 231
Target Start/End: Original strand, 9058156 - 9058196
Alignment:
Q  191 tttaattattggcttaattgcacgtttggacccctatcttt 231  Q
    ||||||| ||||||||||||||| |||||||||||||||||    
T  9058156 tttaatttttggcttaattgcacttttggacccctatcttt 9058196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 196 - 231
Target Start/End: Complemental strand, 26435008 - 26434973
Alignment:
Q  196 ttattggcttaattgcacgtttggacccctatcttt 231  Q
    |||||||||||||||||| |||||||||||||||||    
T  26435008 ttattggcttaattgcacttttggacccctatcttt 26434973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 231
Target Start/End: Complemental strand, 23793099 - 23793065
Alignment:
Q  197 tattggcttaattgcacgtttggacccctatcttt 231  Q
    ||||||||||||||||| |||||||||||||||||    
T  23793099 tattggcttaattgcacttttggacccctatcttt 23793065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 198 - 231
Target Start/End: Complemental strand, 22075667 - 22075634
Alignment:
Q  198 attggcttaattgcacgtttggacccctatcttt 231  Q
    |||||||||||||||| |||||||||||||||||    
T  22075667 attggcttaattgcacttttggacccctatcttt 22075634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 231
Target Start/End: Original strand, 2371175 - 2371207
Alignment:
Q  199 ttggcttaattgcacgtttggacccctatcttt 231  Q
    ||||||||||||||| |||||||||||||||||    
T  2371175 ttggcttaattgcacttttggacccctatcttt 2371207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 231
Target Start/End: Complemental strand, 2371492 - 2371460
Alignment:
Q  199 ttggcttaattgcacgtttggacccctatcttt 231  Q
    ||||||||||||||| |||||||||||||||||    
T  2371492 ttggcttaattgcacttttggacccctatcttt 2371460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 231
Target Start/End: Original strand, 3263998 - 3264030
Alignment:
Q  199 ttggcttaattgcacgtttggacccctatcttt 231  Q
    ||||||||||||||| |||||||||||||||||    
T  3263998 ttggcttaattgcacttttggacccctatcttt 3264030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 231
Target Start/End: Original strand, 6182980 - 6183012
Alignment:
Q  199 ttggcttaattgcacgtttggacccctatcttt 231  Q
    ||||||||||||||| |||||||||||||||||    
T  6182980 ttggcttaattgcacttttggacccctatcttt 6183012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 231
Target Start/End: Complemental strand, 6183297 - 6183265
Alignment:
Q  199 ttggcttaattgcacgtttggacccctatcttt 231  Q
    ||||||||||||||| |||||||||||||||||    
T  6183297 ttggcttaattgcacttttggacccctatcttt 6183265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 231
Target Start/End: Complemental strand, 6491731 - 6491699
Alignment:
Q  199 ttggcttaattgcacgtttggacccctatcttt 231  Q
    ||||||||||||||| |||||||||||||||||    
T  6491731 ttggcttaattgcacttttggacccctatcttt 6491699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 231
Target Start/End: Complemental strand, 13791890 - 13791858
Alignment:
Q  199 ttggcttaattgcacgtttggacccctatcttt 231  Q
    ||||||||||||||| |||||||||||||||||    
T  13791890 ttggcttaattgcacttttggacccctatcttt 13791858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 195 - 231
Target Start/End: Complemental strand, 18590149 - 18590113
Alignment:
Q  195 attattggcttaattgcacgtttggacccctatcttt 231  Q
    ||||||||||||||||||| |||||| ||||||||||    
T  18590149 attattggcttaattgcacttttggatccctatcttt 18590113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 231
Target Start/End: Complemental strand, 28503451 - 28503419
Alignment:
Q  199 ttggcttaattgcacgtttggacccctatcttt 231  Q
    ||||||||||||||| |||||||||||||||||    
T  28503451 ttggcttaattgcacttttggacccctatcttt 28503419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 231
Target Start/End: Original strand, 30294868 - 30294900
Alignment:
Q  199 ttggcttaattgcacgtttggacccctatcttt 231  Q
    ||||||||||||||| |||||||||||||||||    
T  30294868 ttggcttaattgcacttttggacccctatcttt 30294900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 231
Target Start/End: Original strand, 32341493 - 32341525
Alignment:
Q  199 ttggcttaattgcacgtttggacccctatcttt 231  Q
    ||||||||||||||| |||||||||||||||||    
T  32341493 ttggcttaattgcacttttggacccctatcttt 32341525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 231
Target Start/End: Complemental strand, 38622718 - 38622686
Alignment:
Q  199 ttggcttaattgcacgtttggacccctatcttt 231  Q
    ||||||||||||||| |||||||||||||||||    
T  38622718 ttggcttaattgcacttttggacccctatcttt 38622686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 231
Target Start/End: Complemental strand, 42407200 - 42407168
Alignment:
Q  199 ttggcttaattgcacgtttggacccctatcttt 231  Q
    ||||||||||||||| |||||||||||||||||    
T  42407200 ttggcttaattgcacttttggacccctatcttt 42407168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 231
Target Start/End: Complemental strand, 52149829 - 52149797
Alignment:
Q  199 ttggcttaattgcacgtttggacccctatcttt 231  Q
    ||||||||||||||| |||||||||||||||||    
T  52149829 ttggcttaattgcacttttggacccctatcttt 52149797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 196 - 231
Target Start/End: Complemental strand, 44184289 - 44184254
Alignment:
Q  196 ttattggcttaattgcacgtttggacccctatcttt 231  Q
    |||||||||||||||||| |||||||||||||||||    
T  44184289 ttattggcttaattgcacttttggacccctatcttt 44184254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 231
Target Start/End: Original strand, 20982276 - 20982310
Alignment:
Q  197 tattggcttaattgcacgtttggacccctatcttt 231  Q
    ||||||||||||||||| |||||||||||||||||    
T  20982276 tattggcttaattgcacttttggacccctatcttt 20982310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 194 - 231
Target Start/End: Complemental strand, 41282167 - 41282130
Alignment:
Q  194 aattattggcttaattgcacgtttggacccctatcttt 231  Q
    |||| ||||||||||||||| |||||||||||||||||    
T  41282167 aatttttggcttaattgcacttttggacccctatcttt 41282130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 231
Target Start/End: Complemental strand, 2119029 - 2118997
Alignment:
Q  199 ttggcttaattgcacgtttggacccctatcttt 231  Q
    ||||||||||||||| |||||||||||||||||    
T  2119029 ttggcttaattgcacttttggacccctatcttt 2118997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 231
Target Start/End: Complemental strand, 3212467 - 3212435
Alignment:
Q  199 ttggcttaattgcacgtttggacccctatcttt 231  Q
    ||||||||||||||| |||||||||||||||||    
T  3212467 ttggcttaattgcacttttggacccctatcttt 3212435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 231
Target Start/End: Complemental strand, 5577248 - 5577216
Alignment:
Q  199 ttggcttaattgcacgtttggacccctatcttt 231  Q
    ||||||||||||||| |||||||||||||||||    
T  5577248 ttggcttaattgcacttttggacccctatcttt 5577216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 195 - 231
Target Start/End: Original strand, 8313943 - 8313979
Alignment:
Q  195 attattggcttaattgcacgtttggacccctatcttt 231  Q
    ||||| ||||||||||||| |||||||||||||||||    
T  8313943 attataggcttaattgcacttttggacccctatcttt 8313979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 231
Target Start/End: Original strand, 17483559 - 17483591
Alignment:
Q  199 ttggcttaattgcacgtttggacccctatcttt 231  Q
    ||||||||||||||| |||||||||||||||||    
T  17483559 ttggcttaattgcacttttggacccctatcttt 17483591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 231
Target Start/End: Complemental strand, 17483873 - 17483841
Alignment:
Q  199 ttggcttaattgcacgtttggacccctatcttt 231  Q
    ||||||||||||||| |||||||||||||||||    
T  17483873 ttggcttaattgcacttttggacccctatcttt 17483841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 231
Target Start/End: Complemental strand, 25053899 - 25053867
Alignment:
Q  199 ttggcttaattgcacgtttggacccctatcttt 231  Q
    ||||||||||||||| |||||||||||||||||    
T  25053899 ttggcttaattgcacttttggacccctatcttt 25053867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 231
Target Start/End: Complemental strand, 27857450 - 27857418
Alignment:
Q  199 ttggcttaattgcacgtttggacccctatcttt 231  Q
    ||||||||||||||| |||||||||||||||||    
T  27857450 ttggcttaattgcacttttggacccctatcttt 27857418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 231
Target Start/End: Original strand, 27984137 - 27984169
Alignment:
Q  199 ttggcttaattgcacgtttggacccctatcttt 231  Q
    ||||||||||||||| |||||||||||||||||    
T  27984137 ttggcttaattgcacttttggacccctatcttt 27984169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 231
Target Start/End: Complemental strand, 45760548 - 45760516
Alignment:
Q  199 ttggcttaattgcacgtttggacccctatcttt 231  Q
    ||||||||||||||| |||||||||||||||||    
T  45760548 ttggcttaattgcacttttggacccctatcttt 45760516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 231
Target Start/End: Original strand, 47530337 - 47530369
Alignment:
Q  199 ttggcttaattgcacgtttggacccctatcttt 231  Q
    ||||||||||||||| |||||||||||||||||    
T  47530337 ttggcttaattgcacttttggacccctatcttt 47530369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 231
Target Start/End: Original strand, 51213305 - 51213337
Alignment:
Q  199 ttggcttaattgcacgtttggacccctatcttt 231  Q
    ||||||||||||||| |||||||||||||||||    
T  51213305 ttggcttaattgcacttttggacccctatcttt 51213337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 231
Target Start/End: Complemental strand, 53192428 - 53192396
Alignment:
Q  199 ttggcttaattgcacgtttggacccctatcttt 231  Q
    ||||||||||||||| |||||||||||||||||    
T  53192428 ttggcttaattgcacttttggacccctatcttt 53192396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 198 - 231
Target Start/End: Complemental strand, 388217 - 388184
Alignment:
Q  198 attggcttaattgcacgtttggacccctatcttt 231  Q
    |||||||||||||||| |||||||||||||||||    
T  388217 attggcttaattgcacttttggacccctatcttt 388184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 190 - 231
Target Start/End: Original strand, 11900039 - 11900080
Alignment:
Q  190 gtttaattattggcttaattgcacgtttggacccctatcttt 231  Q
    |||||||||  ||||||||||||| |||||||||||||||||    
T  11900039 gtttaattaaaggcttaattgcacttttggacccctatcttt 11900080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 194 - 231
Target Start/End: Original strand, 18295845 - 18295882
Alignment:
Q  194 aattattggcttaattgcacgtttggacccctatcttt 231  Q
    ||||||||| |||||||||| |||||||||||||||||    
T  18295845 aattattggtttaattgcacttttggacccctatcttt 18295882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 194 - 231
Target Start/End: Complemental strand, 30141240 - 30141203
Alignment:
Q  194 aattattggcttaattgcacgtttggacccctatcttt 231  Q
    |||||| ||||||||||||| |||||||||||||||||    
T  30141240 aattataggcttaattgcacttttggacccctatcttt 30141203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 231
Target Start/End: Complemental strand, 10319208 - 10319176
Alignment:
Q  199 ttggcttaattgcacgtttggacccctatcttt 231  Q
    ||||||||||||||| |||||||||||||||||    
T  10319208 ttggcttaattgcacttttggacccctatcttt 10319176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 231
Target Start/End: Complemental strand, 10385764 - 10385732
Alignment:
Q  199 ttggcttaattgcacgtttggacccctatcttt 231  Q
    ||||||||||||||| |||||||||||||||||    
T  10385764 ttggcttaattgcacttttggacccctatcttt 10385732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 231
Target Start/End: Complemental strand, 19233634 - 19233602
Alignment:
Q  199 ttggcttaattgcacgtttggacccctatcttt 231  Q
    ||||||||||||||| |||||||||||||||||    
T  19233634 ttggcttaattgcacttttggacccctatcttt 19233602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 231
Target Start/End: Complemental strand, 30699339 - 30699307
Alignment:
Q  199 ttggcttaattgcacgtttggacccctatcttt 231  Q
    ||||||||||||||| |||||||||||||||||    
T  30699339 ttggcttaattgcacttttggacccctatcttt 30699307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 231
Target Start/End: Complemental strand, 38445721 - 38445689
Alignment:
Q  199 ttggcttaattgcacgtttggacccctatcttt 231  Q
    ||||||||||||||| |||||||||||||||||    
T  38445721 ttggcttaattgcacttttggacccctatcttt 38445689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 231
Target Start/End: Original strand, 39976727 - 39976759
Alignment:
Q  199 ttggcttaattgcacgtttggacccctatcttt 231  Q
    ||||||||||||||| |||||||||||||||||    
T  39976727 ttggcttaattgcacttttggacccctatcttt 39976759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 198 - 231
Target Start/End: Original strand, 8339956 - 8339989
Alignment:
Q  198 attggcttaattgcacgtttggacccctatcttt 231  Q
    |||||||||||||||| |||||||||||||||||    
T  8339956 attggcttaattgcacttttggacccctatcttt 8339989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 231
Target Start/End: Complemental strand, 23502443 - 23502411
Alignment:
Q  199 ttggcttaattgcacgtttggacccctatcttt 231  Q
    ||||||||||||||| |||||||||||||||||    
T  23502443 ttggcttaattgcacttttggacccctatcttt 23502411  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 231
Target Start/End: Complemental strand, 26323690 - 26323658
Alignment:
Q  199 ttggcttaattgcacgtttggacccctatcttt 231  Q
    ||||||||||||||| |||||||||||||||||    
T  26323690 ttggcttaattgcacttttggacccctatcttt 26323658  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 231
Target Start/End: Complemental strand, 34169103 - 34169071
Alignment:
Q  199 ttggcttaattgcacgtttggacccctatcttt 231  Q
    ||||||||||||||| |||||||||||||||||    
T  34169103 ttggcttaattgcacttttggacccctatcttt 34169071  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 231
Target Start/End: Complemental strand, 42739902 - 42739870
Alignment:
Q  199 ttggcttaattgcacgtttggacccctatcttt 231  Q
    ||||||||||||||| |||||||||||||||||    
T  42739902 ttggcttaattgcacttttggacccctatcttt 42739870  T

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Target: scaffold0213 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0213
Description:

Target: scaffold0213; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 231
Target Start/End: Complemental strand, 21362 - 21330
Alignment:
Q  199 ttggcttaattgcacgtttggacccctatcttt 231  Q
    ||||||||||||||| |||||||||||||||||    
T  21362 ttggcttaattgcacttttggacccctatcttt 21330  T

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Target: scaffold0121 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 231
Target Start/End: Original strand, 22293 - 22325
Alignment:
Q  199 ttggcttaattgcacgtttggacccctatcttt 231  Q
    ||||||||||||||| |||||||||||||||||    
T  22293 ttggcttaattgcacttttggacccctatcttt 22325  T

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Target: scaffold0121; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 231
Target Start/End: Complemental strand, 22591 - 22559
Alignment:
Q  199 ttggcttaattgcacgtttggacccctatcttt 231  Q
    ||||||||||||||| |||||||||||||||||    
T  22591 ttggcttaattgcacttttggacccctatcttt 22559  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 231
Target Start/End: Original strand, 1814974 - 1815006
Alignment:
Q  199 ttggcttaattgcacgtttggacccctatcttt 231  Q
    ||||||||||||||| |||||||||||||||||    
T  1814974 ttggcttaattgcacttttggacccctatcttt 1815006  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 231
Target Start/End: Original strand, 10977656 - 10977688
Alignment:
Q  199 ttggcttaattgcacgtttggacccctatcttt 231  Q
    ||||||||||||||| |||||||||||||||||    
T  10977656 ttggcttaattgcacttttggacccctatcttt 10977688  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 231
Target Start/End: Complemental strand, 23883403 - 23883371
Alignment:
Q  199 ttggcttaattgcacgtttggacccctatcttt 231  Q
    ||||||||||||||| |||||||||||||||||    
T  23883403 ttggcttaattgcacttttggacccctatcttt 23883371  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 231
Target Start/End: Complemental strand, 28930779 - 28930747
Alignment:
Q  199 ttggcttaattgcacgtttggacccctatcttt 231  Q
    ||||||||||||||| |||||||||||||||||    
T  28930779 ttggcttaattgcacttttggacccctatcttt 28930747  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 231
Target Start/End: Complemental strand, 34705691 - 34705659
Alignment:
Q  199 ttggcttaattgcacgtttggacccctatcttt 231  Q
    ||||||||||||||| |||||||||||||||||    
T  34705691 ttggcttaattgcacttttggacccctatcttt 34705659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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