View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2587_low_4 (Length: 507)
Name: NF2587_low_4
Description: NF2587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2587_low_4 |
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| [»] scaffold0314 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 435; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 19 - 496
Target Start/End: Original strand, 32971157 - 32971632
Alignment:
| Q |
19 |
cgatgatgatcattcctccgacgacgctgccgatcataaatcttcgccggagacggaagcagttgacgccggaaagtacctcgtgtttgccggtggcggt |
118 |
Q |
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| T |
32971157 |
cgatgatgatcattcctccgacgacgctgccgatcataaatcttcgccggagacggaagcagttgacgccggaaagtacctcgtgtttgccggtggcggt |
32971256 |
T |
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| Q |
119 |
ggagatagccgcagcggtattcctaattctgtgttgctcgcgcattttgatgttgtatcggattctctctctgatccaccggtacattttatatttctta |
218 |
Q |
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| T |
32971257 |
ggagatagccgcagcggtattcctaattctgtgttgctcgcgcattttgatgttgtatcggattctctctctgatccaccggtacatgttatatttctta |
32971356 |
T |
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| Q |
219 |
tgattcttgttatgttctgaaattttgattgatttgatttcgtagtgaaaaatgaattggatctgagtttgatcaggatttttgttgtttgagttgtgat |
318 |
Q |
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| T |
32971357 |
tgattcttgttatgttctgaaattttgattgatttgattttgtagtgaaaaatgaattggatctgagtttgattaggatttttgttgtttgagttgtgat |
32971456 |
T |
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| Q |
319 |
gcaattgaattgaatgcttgtttctgtttgttacaatgtgaggaatctgtagcgctagaatgcatgtctgatgtccgatatagtgttctcgacacttgtg |
418 |
Q |
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| T |
32971457 |
tcaattgaattgaatgcttgtttctgtttgttacaatgtgaggaatctgtagccctagaatgcgtgtctgatgtccgatatagtgttctcgacacttgtg |
32971556 |
T |
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| Q |
419 |
attacgttcaattatgtcatttcgtcaaattgtgtgtctggatcatgtttggtgtccgtatctgtgttggtgcttcat |
496 |
Q |
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| T |
32971557 |
attatgttcaattatgtcatttcgtcaaat--tgtgtctggatcatgtttggtgtccgtatctgtgttagtgcttcat |
32971632 |
T |
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Back To:
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Target: scaffold0314 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0314
Description:
Target: scaffold0314; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 408 - 440
Target Start/End: Complemental strand, 9001 - 8969
Alignment:
| Q |
408 |
cgacacttgtgattacgttcaattatgtcattt |
440 |
Q |
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| T |
9001 |
cgacacttgtgattacgttgaattatgtcattt |
8969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 409 - 449
Target Start/End: Complemental strand, 1586660 - 1586620
Alignment:
| Q |
409 |
gacacttgtgattacgttcaattatgtcatttcgtcaaatt |
449 |
Q |
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| T |
1586660 |
gacacatgtgattacgttcaattatgtcattttttcaaatt |
1586620 |
T |
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