View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2587_low_7 (Length: 489)
Name: NF2587_low_7
Description: NF2587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2587_low_7 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 388; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 1 - 471
Target Start/End: Original strand, 46630963 - 46631430
Alignment:
| Q |
1 |
gcatttgaatggaggtggtaatggtagctacatatttgcaagttacttggttaagttaaagagtagaggtcaattgttgtaattttttaagctacctgct |
100 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46630963 |
gcatttgaatggaggtggtaaaggtagctacatatttgcaagttacttggttaagttaaagagtagaggtcaattgttgtaattttttaagctacctgct |
46631062 |
T |
|
| Q |
101 |
atctgtcatcatggagtttctgactgttgtaaacaaattggttttgaatgtatcgtcgatgctcctcttgccttccttgcaaattgtgttctaaagctgc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
46631063 |
atctgtcatcatggagtttctgactgttgtaaacaaattggttttgaatgtatcg---atgctcctcttgccttacttgcaaattgtgttctaaagctgc |
46631159 |
T |
|
| Q |
201 |
caaatgaatagacatactgtacnnnnnnnnttggtttgttctgatttccaaaatttccttatctctggttannnnnnnattttattgaataaatcaaaat |
300 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
46631160 |
caaatgaatagacatactgtacaaaaaaaattggtttgttttgatttccaaaatttccttatctctggttatttttttattttattgaataaatcaaaat |
46631259 |
T |
|
| Q |
301 |
gttgtccaagtggatcaatgttggaaattttgtaatgtgttggttttccatttatttatacaatattggttgaattatattttgactggtaccggaacat |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46631260 |
gttgtccaagtggatcaatgttggaaattttgcaatgtgtttgttttccatttatttatacaatattggttgaattatattttgactggtaccggaacat |
46631359 |
T |
|
| Q |
401 |
ctatcttttgttaaatggatattgaacatcacagggtgagtgaacttcaatagtgtagcttatgatagaag |
471 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46631360 |
ctatcttttgttaaatggatattgaacatcacacggtgagtgaacttcaatagtgtagcttatgatagaag |
46631430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 26 - 200
Target Start/End: Complemental strand, 46172792 - 46172622
Alignment:
| Q |
26 |
agctacatatttgcaagttacttggttaagttaaagagtagaggtcaattgttgtaattttttaagctacct-gctatctgtcatcatggagtttctgac |
124 |
Q |
| |
|
||||| ||||||||||| |||||||||||||||||| ||||| ||||| || || | |||||||||| || ||||||||||||||||| || | | | |
|
|
| T |
46172792 |
agctaaatatttgcaagccacttggttaagttaaagaatagagatcaatagtggtta-tttttaagctttctacctatctgtcatcatggaattccag-c |
46172695 |
T |
|
| Q |
125 |
tgttgtaaacaaattggttttgaatgtatcgtcgatgctcctcttgccttccttgcaaattgtgttctaaagctgc |
200 |
Q |
| |
|
| ||| ||||||||||| ||||||||| | ||||||| ||| ||||| ||||||||||||||||||| ||||| |
|
|
| T |
46172694 |
ttttggaaacaaattggctttgaatgt---gccgatgcttctcctgcctgacttgcaaattgtgttctaaggctgc |
46172622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 291 - 375
Target Start/End: Original strand, 46639471 - 46639558
Alignment:
| Q |
291 |
aaatcaaaatgttgtccaagtggatcaatgttggaaattttg---taatgtgttggttttccatttatttatacaatattggttgaat |
375 |
Q |
| |
|
|||||||||||| ||||||||||| |||||| ||||||||| | |||||||||| ||||||| |||||||||| |||| |||||| |
|
|
| T |
46639471 |
aaatcaaaatgtcgtccaagtggaagaatgttagaaattttgtttttatgtgttggtcttccattcatttatacaacattgattgaat |
46639558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 25 - 74
Target Start/End: Original strand, 46620454 - 46620503
Alignment:
| Q |
25 |
tagctacatatttgcaagttacttggttaagttaaagagtagaggtcaat |
74 |
Q |
| |
|
|||||| ||||||||||| | |||||||||||||||||||||||||||| |
|
|
| T |
46620454 |
tagctagatatttgcaagccaattggttaagttaaagagtagaggtcaat |
46620503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 129; Significance: 1e-66; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 2 - 271
Target Start/End: Complemental strand, 15767967 - 15767700
Alignment:
| Q |
2 |
catttgaatggaggtggtaatggtagctacatatttgcaagttacttggttaagttaaagagtagaggtcaattgttgtaattttttaagctacctg-ct |
100 |
Q |
| |
|
||||||| ||||| | ||| || |||||| || ||| |||| ||||||||||||||||||||||||||||||| || ||||||||||||| |||||| || |
|
|
| T |
15767967 |
catttgattggagatcgtagtgttagctaaatgttttcaagctacttggttaagttaaagagtagaggtcaatagtggtaattttttaagttacctgcct |
15767868 |
T |
|
| Q |
101 |
atctgtcatcatggagtttctgactgttgtaaacaaattggttttgaatgtatcgtcgatgctcctcttgccttccttgcaaattgtgttctaaagctgc |
200 |
Q |
| |
|
||||||||||||||||||||||||| |||||| ||||||||||||||||||| | ||||| |||||||||| ||||||||||| ||||||| ||||| |
|
|
| T |
15767867 |
atctgtcatcatggagtttctgacttttgtaatcaaattggttttgaatgta---ttaatgcttctcttgccttacttgcaaattgagttctaaggctgc |
15767771 |
T |
|
| Q |
201 |
caaatgaatagacatactgtacnnnnnnnnttggtttgttctgatttccaaaatttccttatctctggtta |
271 |
Q |
| |
|
||||||| |||||||||||||| ||||||| || ||||||||||||||||||| |||||||||| |
|
|
| T |
15767770 |
caaatgactagacatactgtacaaaaaaatttggtttattttgatttccaaaatttccttttctctggtta |
15767700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 319 - 467
Target Start/End: Complemental strand, 15767683 - 15767535
Alignment:
| Q |
319 |
tgttggaaattttgtaatgtgttggttttccatttatttatacaatattggttgaattatattttgactggtaccggaacatctatcttttgttaaatgg |
418 |
Q |
| |
|
|||||||| |||||| ||||||||||||||| || |||||||||| || |||||| |||||||||||| |||||| || |||||||||||||||||||| |
|
|
| T |
15767683 |
tgttggaagttttgttatgtgttggttttccgttcatttatacaacataggttgagttatattttgacgggtaccaaaatatctatcttttgttaaatgg |
15767584 |
T |
|
| Q |
419 |
atattgaacatcacagggtgagtgaacttcaatagtgtagcttatgata |
467 |
Q |
| |
|
||||||||||| ||| | ||||| ||| ||||| ||||| ||||||| |
|
|
| T |
15767583 |
atattgaacattacaccgggagtgtgcttaaatagcgtagcatatgata |
15767535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 49; Significance: 8e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 2 - 152
Target Start/End: Complemental strand, 18373847 - 18373693
Alignment:
| Q |
2 |
catttgaatggaggtggtaatggtagctacatatttgcaagttacttggttaagttaaagagtagaggtcaattgttgtaattttttaagctacctg-ct |
100 |
Q |
| |
|
||||| ||||||| ||||| || |||||| ||||||||||| | |||||||||||||||||||||||||||| ||| | | ||||||| ||| || || |
|
|
| T |
18373847 |
catttcaatggagatggtagtgttagctagatatttgcaagccaattggttaagttaaagagtagaggtcaatagttattttcttttaagatacatgcct |
18373748 |
T |
|
| Q |
101 |
atctg---tcatcatggagtttctgactgttgtaaacaaattggttttgaatgta |
152 |
Q |
| |
|
||||| |||||||||||||| |||| ||| ||||||| |||||| ||||||| |
|
|
| T |
18373747 |
atctgtcatcatcatggagtttttgacctttggaaacaaaatggtttagaatgta |
18373693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University