View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2587_low_8 (Length: 445)
Name: NF2587_low_8
Description: NF2587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2587_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 377; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 18 - 442
Target Start/End: Original strand, 8285338 - 8285762
Alignment:
| Q |
18 |
agttggaacattttttctattagacttgccttttgattaagccaaactcgaaattaccaagcctctttctgagaatcagacagttaaaacaacaaaaata |
117 |
Q |
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| T |
8285338 |
agttggaacattttttctattagacttgccttttgattaagccaaactcgaaattaccaagccgctttctgagaatcagacagtttaaacaacaaaaata |
8285437 |
T |
|
| Q |
118 |
tatcaatttttacatataatgctcccttaaaaacttgcacatatatatgcacccaaaatttaaagcaccgggtatgatttcgtttaattatatcccttag |
217 |
Q |
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| T |
8285438 |
tatcaatttttacatatattgctcccttaaaaacttgcacatatatatgcacccaaaatttaaagcaccgggtatgatttcgtttaattatatcccttag |
8285537 |
T |
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| Q |
218 |
acgtgtgcaatgtgcatgacttcatttagttgaagtttgtgtttccaagttgcatatgagagatgaattgttgtctgtgtgtttgtcaggatttggtgtg |
317 |
Q |
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| T |
8285538 |
acgtgtgcaatgtgcatgatttcatttagttgaagtttgtgtttccaagttgcatatgagagatgaattgttatttgtgtgtttgtcaggatttggtgtg |
8285637 |
T |
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| Q |
318 |
gaagatgaagcggaaaaatgtacgttgattactaaggacgccgcattcaaggttgatgtggggccctttaacgttcgtgcatcctttggagatagagcag |
417 |
Q |
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| T |
8285638 |
gaagatgaagcggaaaaatgtatggtgattactaaggacgccgcattcaaggttgatgcagggccctttaacgttcgtgcatcctttggagatagagcag |
8285737 |
T |
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| Q |
418 |
ttctctttgactcctatgctactcc |
442 |
Q |
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| T |
8285738 |
ttctctttgactcctctggtactcc |
8285762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 66; Significance: 5e-29; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 167 - 432
Target Start/End: Original strand, 34697227 - 34697492
Alignment:
| Q |
167 |
cacccaaaatttaaagcaccgggtatgatttcgtttaattatatcccttagacgtgtgcaatgtgcatgacttcatttagttgaagtttgtgtttccaag |
266 |
Q |
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|||||| |||||||||||| ||||||| || ||| || ||||| | | |||||||||||||| |||| |||||||| ||||| ||||||| || | || |
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| T |
34697227 |
cacccagaatttaaagcacggggtatggttatgttctataatatctcatggacgtgtgcaatgttcatggcttcatttggttgatgtttgtgctttcgag |
34697326 |
T |
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| Q |
267 |
ttgcatatgagagatgaattgttgtctgtgtgtttgtcaggatttggtgtggaagatgaagcggaaaaatgtacgttgattactaaggacgccgcattca |
366 |
Q |
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| T |
34697327 |
ttgcatatgactcataaattgttgtatgtgtgtttctcaggttttagtgaggacaatgttactgcaaaatgtagggtgattactatcgacggtgcattcg |
34697426 |
T |
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| Q |
367 |
aggttgatgtggggccctttaacgttcgtgcatcctttggagatagagcagttctctttgactcct |
432 |
Q |
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| T |
34697427 |
aagttaatgtggggccctttaacgttcgtaaattctttggcgatggagcagttctgcttgactcct |
34697492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 378 - 432
Target Start/End: Original strand, 34687526 - 34687580
Alignment:
| Q |
378 |
gggccctttaacgttcgtgcatcctttggagatagagcagttctctttgactcct |
432 |
Q |
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| T |
34687526 |
gggccctttaacgttcgtgaatcctttggtaatagagcagttctgtttgactcct |
34687580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 265 - 432
Target Start/End: Original strand, 24968890 - 24969055
Alignment:
| Q |
265 |
agttgcatatgagagatgaattgttgtctgtgtgtttgtcaggatttggtgtggaagatgaagcggaaaaatgtacgttgattactaaggacgccgcatt |
364 |
Q |
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| T |
24968890 |
agttgcatattacagatgaattgttg--tgtgtgtttgtcaggttttggtaaggaagatggtacgacaaaatatagggtggttactaatggtgccgtatt |
24968987 |
T |
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| Q |
365 |
caaggttgatgtggggccctttaacgttcgtgcatcctttggagatagagcagttctctttgactcct |
432 |
Q |
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| T |
24968988 |
cgaggttcatgcagggtcctttaacgttcgtgaattgtttggtgatgaagcagttctatttgactcct |
24969055 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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