View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2588_high_3 (Length: 396)
Name: NF2588_high_3
Description: NF2588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2588_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 278; Significance: 1e-155; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 19 - 304
Target Start/End: Original strand, 35145593 - 35145878
Alignment:
| Q |
19 |
ggtctaagcttatcccagtggattttattccccacaatcctccaattcccactgcgtgtcctaaatgaaacacattttaatcacctccatataatcaaat |
118 |
Q |
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| T |
35145593 |
ggtctaagcttatcccagtggattttattccccacaatcctccaattcccactgcgtgtcctaaatgaaacacattttaatcacctccatataatcaaat |
35145692 |
T |
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| Q |
119 |
tattaaactcatataaaaccgttaatgtcatcacaaaatttaacttgttgaaagagaaaaaatattatgacaatactagagtagtattttgtttaagagt |
218 |
Q |
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| T |
35145693 |
tattaaactcatataaaaccgttaatgtcatcacaaaatttaacttgttgaaagagaaaaaatattatgacaatactagagtagtattttgtttaagagt |
35145792 |
T |
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| Q |
219 |
gtgagtctacccgtatgtataccttgcttgaaaggtatcagttttggagtcatagctaagcaaggcctcgtgaacatatagtccct |
304 |
Q |
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| T |
35145793 |
gtgattccacccgtatgtataccttgcttgaaaggtatcagttttggagtcatagctaagcaaggcctcgtgaacatatagtccct |
35145878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 351 - 388
Target Start/End: Original strand, 35145898 - 35145935
Alignment:
| Q |
351 |
ctcgttttaagaattttgatatgactccggagaataat |
388 |
Q |
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| T |
35145898 |
ctcgttttaagaattttgatatgactccggagaataat |
35145935 |
T |
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