View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2588_high_4 (Length: 275)

Name: NF2588_high_4
Description: NF2588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2588_high_4
NF2588_high_4
[»] chr8 (22 HSPs)
chr8 (1-275)||(30039398-30039675)
chr8 (170-275)||(7281603-7281708)
chr8 (170-273)||(2968486-2968592)
chr8 (198-274)||(1039960-1040037)
chr8 (197-273)||(24791236-24791313)
chr8 (191-274)||(31202436-31202520)
chr8 (197-274)||(9501573-9501652)
chr8 (197-274)||(2025276-2025354)
chr8 (197-274)||(10338889-10338967)
chr8 (197-274)||(37612637-37612715)
chr8 (197-274)||(41361716-41361794)
chr8 (223-274)||(23971161-23971212)
chr8 (197-274)||(14600765-14600843)
chr8 (197-274)||(30026947-30027025)
chr8 (238-274)||(28297175-28297211)
chr8 (197-274)||(10147930-10148009)
chr8 (227-274)||(37128553-37128600)
chr8 (170-260)||(13576257-13576347)
chr8 (230-275)||(7270006-7270051)
chr8 (183-244)||(9628954-9629015)
chr8 (191-274)||(12329604-12329688)
chr8 (238-274)||(31308174-31308210)
[»] chr1 (21 HSPs)
chr1 (197-275)||(33125864-33125942)
chr1 (191-274)||(20411551-20411635)
chr1 (197-274)||(424350-424428)
chr1 (197-274)||(7995619-7995697)
chr1 (197-274)||(32784092-32784170)
chr1 (197-274)||(33487089-33487167)
chr1 (137-275)||(9298473-9298610)
chr1 (197-274)||(29205269-29205347)
chr1 (191-274)||(3232766-3232850)
chr1 (133-269)||(32878628-32878764)
chr1 (208-274)||(37822404-37822471)
chr1 (197-274)||(28678189-28678267)
chr1 (197-273)||(24114740-24114814)
chr1 (198-274)||(17347584-17347660)
chr1 (223-274)||(44517158-44517209)
chr1 (197-274)||(4871085-4871163)
chr1 (197-274)||(12871605-12871683)
chr1 (197-274)||(42490877-42490955)
chr1 (197-273)||(13488596-13488673)
chr1 (198-274)||(27534684-27534761)
chr1 (191-274)||(14265262-14265346)
[»] chr3 (26 HSPs)
chr3 (193-273)||(53402610-53402691)
chr3 (210-275)||(39429567-39429632)
chr3 (197-272)||(1074962-1075038)
chr3 (197-274)||(34960925-34961003)
chr3 (197-273)||(3456927-3457004)
chr3 (191-274)||(31270304-31270388)
chr3 (197-274)||(36691866-36691944)
chr3 (197-274)||(53155497-53155575)
chr3 (197-273)||(31462814-31462891)
chr3 (207-274)||(24483745-24483813)
chr3 (223-274)||(54239085-54239136)
chr3 (197-274)||(11819067-11819145)
chr3 (197-274)||(14585446-14585524)
chr3 (197-274)||(30156349-30156426)
chr3 (197-274)||(48400883-48400961)
chr3 (206-274)||(35174697-35174766)
chr3 (206-274)||(49628154-49628223)
chr3 (191-274)||(32080821-32080905)
chr3 (223-274)||(36624761-36624812)
chr3 (197-274)||(40013339-40013420)
chr3 (197-274)||(4206578-4206656)
chr3 (197-274)||(13702039-13702117)
chr3 (197-274)||(19645205-19645283)
chr3 (209-274)||(22484961-22485027)
chr3 (197-274)||(48652507-48652585)
chr3 (174-275)||(53962087-53962188)
[»] chr5 (16 HSPs)
chr5 (191-274)||(17699531-17699615)
chr5 (197-273)||(6281028-6281105)
chr5 (191-274)||(27241042-27241126)
chr5 (197-274)||(43493856-43493934)
chr5 (198-274)||(34431045-34431122)
chr5 (197-274)||(17331312-17331390)
chr5 (197-274)||(42609128-42609206)
chr5 (214-274)||(39179887-39179947)
chr5 (191-274)||(39531462-39531544)
chr5 (197-274)||(28040613-28040691)
chr5 (197-274)||(29097773-29097851)
chr5 (197-274)||(33164527-33164605)
chr5 (197-273)||(26295118-26295195)
chr5 (197-252)||(7771887-7771943)
chr5 (197-274)||(32347773-32347852)
chr5 (197-274)||(3740342-3740419)
[»] chr2 (30 HSPs)
chr2 (197-274)||(33012061-33012139)
chr2 (197-274)||(43474187-43474265)
chr2 (170-275)||(17767610-17767715)
chr2 (191-274)||(44942263-44942347)
chr2 (197-274)||(25067836-25067914)
chr2 (191-274)||(27095683-27095767)
chr2 (197-274)||(11937917-11937996)
chr2 (177-275)||(45694512-45694610)
chr2 (197-274)||(4604366-4604444)
chr2 (197-274)||(12704671-12704749)
chr2 (197-274)||(17268183-17268261)
chr2 (197-274)||(36867992-36868070)
chr2 (198-274)||(13740719-13740795)
chr2 (198-274)||(35333490-35333567)
chr2 (133-274)||(5754211-5754350)
chr2 (197-271)||(9690035-9690110)
chr2 (197-274)||(15919858-15919936)
chr2 (197-274)||(20561191-20561269)
chr2 (197-274)||(22597119-22597197)
chr2 (197-254)||(17116485-17116542)
chr2 (191-251)||(28261975-28262036)
chr2 (196-275)||(11798575-11798654)
chr2 (208-254)||(12994292-12994338)
chr2 (197-274)||(18089451-18089529)
chr2 (197-274)||(38535364-38535442)
chr2 (206-274)||(34416820-34416889)
chr2 (197-268)||(7073013-7073085)
chr2 (197-273)||(15261473-15261549)
chr2 (197-273)||(17055108-17055184)
chr2 (214-274)||(28231156-28231216)
[»] chr4 (26 HSPs)
chr4 (170-275)||(22049463-22049568)
chr4 (197-274)||(43244440-43244518)
chr4 (197-274)||(394333-394411)
chr4 (197-274)||(31521966-31522044)
chr4 (197-274)||(44757101-44757179)
chr4 (197-273)||(478072-478148)
chr4 (198-274)||(13965545-13965622)
chr4 (191-274)||(26742522-26742606)
chr4 (200-274)||(7060311-7060386)
chr4 (197-274)||(51152109-51152187)
chr4 (197-274)||(8712514-8712592)
chr4 (197-274)||(22757078-22757156)
chr4 (197-274)||(29268836-29268914)
chr4 (197-273)||(24568773-24568850)
chr4 (199-274)||(20399962-20400038)
chr4 (136-275)||(12717176-12717314)
chr4 (190-273)||(29235327-29235410)
chr4 (190-252)||(12754151-12754213)
chr4 (197-274)||(24100123-24100201)
chr4 (197-273)||(27394814-27394891)
chr4 (200-274)||(7083875-7083950)
chr4 (197-274)||(24825633-24825711)
chr4 (236-274)||(25658191-25658229)
chr4 (191-274)||(7861264-7861348)
chr4 (191-274)||(26674350-26674434)
chr4 (226-274)||(43493346-43493394)
[»] scaffold0155 (1 HSPs)
scaffold0155 (197-274)||(35066-35144)
[»] chr7 (26 HSPs)
chr7 (198-274)||(11833003-11833081)
chr7 (197-274)||(21603447-21603524)
chr7 (191-274)||(28664971-28665055)
chr7 (197-274)||(27535440-27535518)
chr7 (197-274)||(48304454-48304532)
chr7 (197-273)||(46026089-46026166)
chr7 (191-274)||(1281196-1281280)
chr7 (198-272)||(36579373-36579448)
chr7 (197-274)||(9785301-9785379)
chr7 (197-274)||(17473782-17473860)
chr7 (197-274)||(17579354-17579432)
chr7 (197-274)||(42603828-42603906)
chr7 (195-274)||(6667377-6667458)
chr7 (195-274)||(45482046-45482126)
chr7 (197-274)||(5684349-5684427)
chr7 (197-274)||(5709399-5709477)
chr7 (197-274)||(39533034-39533112)
chr7 (197-274)||(42644660-42644738)
chr7 (197-274)||(45457615-45457693)
chr7 (207-274)||(2622586-2622654)
chr7 (191-266)||(10574359-10574435)
chr7 (235-274)||(32740776-32740815)
chr7 (197-275)||(39707274-39707352)
chr7 (198-274)||(17509263-17509339)
chr7 (198-274)||(17543875-17543951)
chr7 (197-273)||(22747568-22747644)
[»] scaffold0056 (1 HSPs)
scaffold0056 (195-274)||(74146-74226)
[»] scaffold0312 (1 HSPs)
scaffold0312 (197-274)||(6121-6199)
[»] chr6 (11 HSPs)
chr6 (197-274)||(15590138-15590216)
chr6 (197-274)||(8693716-8693797)
chr6 (197-274)||(6419917-6419995)
chr6 (195-273)||(15470295-15470373)
chr6 (197-274)||(21507867-21507945)
chr6 (198-274)||(14783230-14783307)
chr6 (191-265)||(29927447-29927522)
chr6 (195-273)||(15175795-15175873)
chr6 (197-274)||(23654234-23654312)
chr6 (197-274)||(31937478-31937555)
chr6 (197-274)||(12481429-12481507)
[»] scaffold1379 (1 HSPs)
scaffold1379 (197-274)||(1145-1223)
[»] scaffold0536 (1 HSPs)
scaffold0536 (197-274)||(2884-2964)
[»] scaffold0001 (1 HSPs)
scaffold0001 (199-274)||(404317-404393)
[»] scaffold0321 (1 HSPs)
scaffold0321 (223-274)||(7183-7234)
[»] scaffold0580 (2 HSPs)
scaffold0580 (195-273)||(840-917)
scaffold0580 (195-273)||(8579-8656)
[»] scaffold0238 (1 HSPs)
scaffold0238 (198-275)||(15736-15813)


Alignment Details
Target: chr8 (Bit Score: 177; Significance: 2e-95; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 275
Target Start/End: Complemental strand, 30039675 - 30039398
Alignment:
Q  1 attatactcaataataaatgatagggtagcatttatatatttattgcatgcacatttaatagagaaatgataggtgtacacgggatccatgcatgtgtaa 100  Q
    ||||||| |||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  30039675 attatacccaataataaatgatagggtagcatttatatacctattgcatgcacatttaatagagaaatgataggtgtacatgggatccatgcatgtgtaa 30039576  T
Q  101 aactttttaacnnnnnnnnn---aaagaagctaaactctcttctcttcttctcaaaccccaaccgtcattattttctttttcttgtctaatgaagatgag 197  Q
    || |||||||             ||||||||||| ||||||||||| ||| |||||||||||||||||||  ||||||||||||||||||||||||||||    
T  30039575 aattttttaagttttttttttttaaagaagctaacctctcttctctccttttcaaaccccaaccgtcattcctttctttttcttgtctaatgaagatgag 30039476  T
Q  198 tgatttatggtcaattttgacccacaatcacccatcagaattgtttttccttcttttctaattgaataagtgatttcc 275  Q
    |||||||||||||||||||||||| |||||| |||| ||||||||||||||||||||||||||||||| |||||||||    
T  30039475 tgatttatggtcaattttgacccaaaatcactcatccgaattgtttttccttcttttctaattgaatatgtgatttcc 30039398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 170 - 275
Target Start/End: Original strand, 7281603 - 7281708
Alignment:
Q  170 tttctttttcttgtctaatgaagatgagtgatttatggtcaattttgacccacaatcacccatcagaattgtttttccttcttttctaattgaataagtg 269  Q
    |||||| |||||||||| ||||||||| ||||||| |||||||| | ||| | ||||||||||| |||||||||||| |||||||||| |||||||||||    
T  7281603 tttcttcttcttgtctattgaagatgaatgatttagggtcaattctaacctaaaatcacccatccgaattgtttttctttcttttctagttgaataagtg 7281702  T
Q  270 atttcc 275  Q
    ||||||    
T  7281703 atttcc 7281708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 170 - 273
Target Start/End: Original strand, 2968486 - 2968592
Alignment:
Q  170 tttctttttcttgtctaatgaagatgagtgatttatggtcaattttgacccacaatcacc---catcagaattgtttttccttcttttctaattgaataa 266  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||| || |||||||   | || || ||||||||| || | |||||||| |||||    
T  2968486 tttctttttcttgtctattgaagatgagtgatttatggtcaattttgactcaaaatcacctctcctccgagttgtttttctttatattctaattaaataa 2968585  T
Q  267 gtgattt 273  Q
    |||||||    
T  2968586 gtgattt 2968592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 198 - 274
Target Start/End: Complemental strand, 1040037 - 1039960
Alignment:
Q  198 tgatttatggtcaattttgacccacaa-tcacccatcagaattgtttttccttcttttctaattgaataagtgatttc 274  Q
    ||||||| |||||||||||| ||| || ||||||||| |||||| |||||||||| |||||||| |||||||||||||    
T  1040037 tgatttaaggtcaattttgatccaaaaatcacccatccgaattggttttccttctattctaattcaataagtgatttc 1039960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 197 - 273
Target Start/End: Complemental strand, 24791313 - 24791236
Alignment:
Q  197 gtgatttatggtcaattttgacccacaa-tcacccatcagaattgtttttccttcttttctaattgaataagtgattt 273  Q
    ||||||||||||||||||||||||| || ||| ||||| ||||||||||||||| | | |||||| ||||||||||||    
T  24791313 gtgatttatggtcaattttgacccaaaaatcatccatccgaattgtttttccttatatcctaattcaataagtgattt 24791236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 191 - 274
Target Start/End: Original strand, 31202436 - 31202520
Alignment:
Q  191 agatgagtgatttatggtcaattttgacccacaa-tcacccatcagaattgtttttccttcttttctaattgaataagtgatttc 274  Q
    ||||| |||||||| |||||||||||||||| || ||| |||||  ||||||||||| |||| || |||||||||||||||||||    
T  31202436 agatgggtgatttaaggtcaattttgacccaaaaatcatccatccaaattgtttttctttctattataattgaataagtgatttc 31202520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 197 - 274
Target Start/End: Original strand, 9501573 - 9501652
Alignment:
Q  197 gtgatttatggtcaattttgacccacaa-tcacccatcagaattgtttt-tccttcttttctaattgaataagtgatttc 274  Q
    |||||||| |||||||||||| ||| || ||||||||| |||||||||| ||||||| | ||||||||||||||||||||    
T  9501573 gtgatttagggtcaattttgatccaaaaatcacccatctgaattgttttttccttctatcctaattgaataagtgatttc 9501652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 197 - 274
Target Start/End: Complemental strand, 2025354 - 2025276
Alignment:
Q  197 gtgatttatggtcaattttgacccacaa-tcacccatcagaattgtttttccttcttttctaattgaataagtgatttc 274  Q
    ||||||||||||||||||||||| | || |||||| ||  | |||||||||||| | ||||||||||||||||||||||    
T  2025354 gtgatttatggtcaattttgaccaaaaaatcacccttccaagttgtttttccttttattctaattgaataagtgatttc 2025276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 197 - 274
Target Start/End: Complemental strand, 10338967 - 10338889
Alignment:
Q  197 gtgatttatggtcaattttgacccacaa-tcacccatcagaattgtttttccttcttttctaattgaataagtgatttc 274  Q
    |||||||| ||||||||||||| || || |||||| || ||||||||||||||| | | ||||||||||||||||||||    
T  10338967 gtgatttaaggtcaattttgacgcaaaaatcacccctccgaattgtttttccttttatcctaattgaataagtgatttc 10338889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 197 - 274
Target Start/End: Original strand, 37612637 - 37612715
Alignment:
Q  197 gtgatttatggtcaattttgacccacaa-tcacccatcagaattgtttttccttcttttctaattgaataagtgatttc 274  Q
    |||||||| |||||||||||||||| || |||||| || ||||| ||||||||||| | ||| ||||||||||||||||    
T  37612637 gtgatttagggtcaattttgacccaaaaatcacccctccgaattttttttccttctatcctagttgaataagtgatttc 37612715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 197 - 274
Target Start/End: Original strand, 41361716 - 41361794
Alignment:
Q  197 gtgatttatggtcaattttgaccc-acaatcacccatcagaattgtttttccttcttttctaattgaataagtgatttc 274  Q
    |||||||||||||||||||||||| | |||||||| || || ||||||||||||||    |||||||||||||||||||    
T  41361716 gtgatttatggtcaattttgacccaaaaatcacccctccgatttgtttttccttctaccgtaattgaataagtgatttc 41361794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 223 - 274
Target Start/End: Complemental strand, 23971212 - 23971161
Alignment:
Q  223 aatcacccatcagaattgtttttccttcttttctaattgaataagtgatttc 274  Q
    |||||| |||| || |||||||||||||| ||||||||||||||||||||||    
T  23971212 aatcactcatccgagttgtttttccttctattctaattgaataagtgatttc 23971161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 197 - 274
Target Start/End: Complemental strand, 14600843 - 14600765
Alignment:
Q  197 gtgatttatggtcaattttgacccacaa-tcacccatcagaattgtttttccttcttttctaattgaataagtgatttc 274  Q
    |||||||| |||||||||||||||| || ||| ||||| || |||||||| ||||| | |||||||||||| |||||||    
T  14600843 gtgatttagggtcaattttgacccaaaaatcatccatccgagttgttttttcttctatcctaattgaataactgatttc 14600765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 197 - 274
Target Start/End: Complemental strand, 30027025 - 30026947
Alignment:
Q  197 gtgatttatggtcaattttgacccacaa-tcacccatcagaattgtttttccttcttttctaattgaataagtgatttc 274  Q
    |||||||| ||||| |||||||||| || ||||||||| || |||||||| ||||| |  |||||||||||||||||||    
T  30027025 gtgatttagggtcatttttgacccaaaaatcacccatccgagttgttttttcttctatcataattgaataagtgatttc 30026947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 238 - 274
Target Start/End: Complemental strand, 28297211 - 28297175
Alignment:
Q  238 ttgtttttccttcttttctaattgaataagtgatttc 274  Q
    ||||||||||||||||||||||||||| |||||||||    
T  28297211 ttgtttttccttcttttctaattgaattagtgatttc 28297175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 197 - 274
Target Start/End: Original strand, 10147930 - 10148009
Alignment:
Q  197 gtgatttatggtcaattttgacccac-aatcacccatcagaattgtttttc-cttcttttctaattgaataagtgatttc 274  Q
    |||||||| ||||||||||||||||  |||||||| || || ||||||||  ||||| | ||||||||||||||||||||    
T  10147930 gtgatttagggtcaattttgacccaataatcacccctccgagttgtttttttcttctatcctaattgaataagtgatttc 10148009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 227 - 274
Target Start/End: Complemental strand, 37128600 - 37128553
Alignment:
Q  227 acccatcagaattgtttttccttcttttctaattgaataagtgatttc 274  Q
    ||||||| ||||||||||||||||| | ||| ||||||||||||||||    
T  37128600 acccatccgaattgtttttccttctatcctagttgaataagtgatttc 37128553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 260
Target Start/End: Complemental strand, 13576347 - 13576257
Alignment:
Q  170 tttctttttcttgtctaatgaagatgagtgatttatggtcaattttgacccacaatcacccatcagaattgtttttccttcttttctaatt 260  Q
    |||||| ||||||||||| ||||| | |||||||| | |||||||||||| | ||||| || || || ||||||||| |||| | ||||||    
T  13576347 tttcttcttcttgtctaacgaagaggggtgatttaggatcaattttgacctaaaatcatccctccgagttgtttttctttctatcctaatt 13576257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 230 - 275
Target Start/End: Original strand, 7270006 - 7270051
Alignment:
Q  230 catcagaattgtttttccttcttttctaattgaataagtgatttcc 275  Q
    |||| ||||| ||||||||||||||||| |||||||| ||||||||    
T  7270006 catcggaattatttttccttcttttctagttgaataaatgatttcc 7270051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 183 - 244
Target Start/End: Complemental strand, 9629015 - 9628954
Alignment:
Q  183 tctaatgaagatgagtgatttatggtcaattttgacccacaatcacccatcagaattgtttt 244  Q
    |||| |||||| |||||||||||| ||||||||||  || ||||| ||||| ||||||||||    
T  9629015 tctactgaagaggagtgatttatgatcaattttgattcaaaatcatccatctgaattgtttt 9628954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 191 - 274
Target Start/End: Original strand, 12329604 - 12329688
Alignment:
Q  191 agatgagtgatttatggtcaattttgacccacaa-tcacccatcagaattgtttttccttcttttctaattgaataagtgatttc 274  Q
    ||||| ||||||||  ||||||||||| ||| || |||||  |  ||||||||||||||| | | ||||||||||||||||||||    
T  12329604 agatgggtgatttagagtcaattttgatccaaaaatcaccatttcgaattgtttttccttttatcctaattgaataagtgatttc 12329688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 238 - 274
Target Start/End: Original strand, 31308174 - 31308210
Alignment:
Q  238 ttgtttttccttcttttctaattgaataagtgatttc 274  Q
    |||||||||||||| | ||||||||||||||||||||    
T  31308174 ttgtttttccttctatcctaattgaataagtgatttc 31308210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 1e-22; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 197 - 275
Target Start/End: Complemental strand, 33125942 - 33125864
Alignment:
Q  197 gtgatttatggtcaattttgacccacaatcacccatcagaattgtttttccttcttttctaattgaataagtgatttcc 275  Q
    |||||||| |||||||||||||||| |||||| ||||  ||||||||||||||||||| ||||||||||||||||||||    
T  33125942 gtgatttagggtcaattttgacccaaaatcactcatctaaattgtttttccttcttttataattgaataagtgatttcc 33125864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 191 - 274
Target Start/End: Original strand, 20411551 - 20411635
Alignment:
Q  191 agatgagtgatttatggtcaattttgacccacaa-tcacccatcagaattgtttttccttcttttctaattgaataagtgatttc 274  Q
    ||||| ||||||||||||||||||||||||| || ||||||||| |||||||||||| || | ||| ||||||||||||||||||    
T  20411551 agatgggtgatttatggtcaattttgacccaaaaatcacccatccgaattgtttttctttttattcaaattgaataagtgatttc 20411635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 197 - 274
Target Start/End: Complemental strand, 424428 - 424350
Alignment:
Q  197 gtgatttatggtcaattttgacccacaa-tcacccatcagaattgtttttccttcttttctaattgaataagtgatttc 274  Q
    |||||||| |||||||||||||||| || |||||| || || |||||||||||||| | ||||||||||||||||||||    
T  424428 gtgatttagggtcaattttgacccaaaaatcacccctccgagttgtttttccttctatcctaattgaataagtgatttc 424350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 197 - 274
Target Start/End: Complemental strand, 7995697 - 7995619
Alignment:
Q  197 gtgatttatggtcaattttgacccacaa-tcacccatcagaattgtttttccttcttttctaattgaataagtgatttc 274  Q
    |||||||| |||||||||||||||| || |||||  || ||||||||||||||||| | ||||||||||||||||||||    
T  7995697 gtgatttagggtcaattttgacccaaaaatcacctctccgaattgtttttccttctatcctaattgaataagtgatttc 7995619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 197 - 274
Target Start/End: Original strand, 32784092 - 32784170
Alignment:
Q  197 gtgatttatggtcaattttgacccacaa-tcacccatcagaattgtttttccttcttttctaattgaataagtgatttc 274  Q
    |||||||| |||||||||||||||| || |||||| || ||||||||||||||||| | || |||||||||||||||||    
T  32784092 gtgatttagggtcaattttgacccaaaaatcacccctccgaattgtttttccttctatccttattgaataagtgatttc 32784170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 197 - 274
Target Start/End: Complemental strand, 33487167 - 33487089
Alignment:
Q  197 gtgatttatggtcaattttgacccacaa-tcacccatcagaattgtttttccttcttttctaattgaataagtgatttc 274  Q
    |||||||| |||||||||||||||| || |||||| || ||||||||||||||||| | ||||||||||| ||||||||    
T  33487167 gtgatttagggtcaattttgacccaaaaatcacccctccgaattgtttttccttctatcctaattgaatatgtgatttc 33487089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 137 - 275
Target Start/End: Complemental strand, 9298610 - 9298473
Alignment:
Q  137 cttctcttcttctcaaaccccaaccgtcattattttctttttcttgtctaatgaagatgagtgatttatggtcaattttgacccacaatcacccatcaga 236  Q
    |||||||||||||||||||  ||| |||     |||||| |||||||||| |||||| | |||||||| |||||||||||| ||| | |||||| || ||    
T  9298610 cttctcttcttctcaaaccttaactgtcggccatttcttcttcttgtctattgaagaagggtgatttagggtcaattttgaaccaaagtcaccc-tccga 9298512  T
Q  237 attgtttttccttcttttctaattgaataagtgatttcc 275  Q
     |||||||||||||| | ||| || ||||| ||||||||    
T  9298511 gttgtttttccttctatcctagttaaataattgatttcc 9298473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 197 - 274
Target Start/End: Original strand, 29205269 - 29205347
Alignment:
Q  197 gtgatttatggtcaattttgacccacaa-tcacccatcagaattgtttttccttcttttctaattgaataagtgatttc 274  Q
    |||||||| |||||||||||||||| || |||||| |  ||||||||||||||||| |  |||||||||||||||||||    
T  29205269 gtgatttagggtcaattttgacccaaaaatcaccccttggaattgtttttccttctatcataattgaataagtgatttc 29205347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 191 - 274
Target Start/End: Original strand, 3232766 - 3232850
Alignment:
Q  191 agatgagtgatttatggtcaattttgacccacaa-tcacccatcagaattgtttttccttcttttctaattgaataagtgatttc 274  Q
    ||||| |||||||| |||||||||||| | | || |||||| || ||||||||||||||||| | |||||||||||| |||||||    
T  3232766 agatgggtgatttagggtcaattttgatcaaaaaatcacccctccgaattgtttttccttctatcctaattgaataaatgatttc 3232850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 133 - 269
Target Start/End: Original strand, 32878628 - 32878764
Alignment:
Q  133 ctctcttctcttcttctcaaaccccaaccgtcattattttctttttcttgtctaatgaagatgagtgatttatggtcaattttgacccacaatcacccat 232  Q
    ||||| ||||| |||||||||| | ||||||||    |||||| ||||| ||||   |||||| |||||||| ||| |||||||||||| ||||| || |    
T  32878628 ctctcctctctccttctcaaactctaaccgtcacccctttcttcttcttatctatcaaagatgggtgatttagggttaattttgacccaaaatcatcctt 32878727  T
Q  233 cagaattgtttttccttcttttctaattgaataagtg 269  Q
    | || |||||||||| ||| | |||||| ||||||||    
T  32878728 ccgagttgtttttccctctatcctaattaaataagtg 32878764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 208 - 274
Target Start/End: Complemental strand, 37822471 - 37822404
Alignment:
Q  208 tcaattttgacccacaa-tcacccatcagaattgtttttccttcttttctaattgaataagtgatttc 274  Q
    |||||||||||||| || | |||| || ||||||||||||||||| | ||||||||||||||||||||    
T  37822471 tcaattttgacccaaaaattacccttctgaattgtttttccttctatcctaattgaataagtgatttc 37822404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 197 - 274
Target Start/End: Complemental strand, 28678267 - 28678189
Alignment:
Q  197 gtgatttatggtcaattttgacccacaa-tcacccatcagaattgtttttccttcttttctaattgaataagtgatttc 274  Q
    |||||||| |||||||||||||||| || |||| | || |||||||||||| |||| |  |||||||||||||||||||    
T  28678267 gtgatttagggtcaattttgacccaaaaatcactcgtccgaattgtttttcgttctatcataattgaataagtgatttc 28678189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 197 - 273
Target Start/End: Complemental strand, 24114814 - 24114740
Alignment:
Q  197 gtgatttatggtcaattttgacccacaatcacccatcagaattgtttttccttcttttctaattgaataagtgattt 273  Q
    |||||||||||||||||| |||||| |||||||  ||  ||||||||||| ||||||| || || ||||||||||||    
T  24114814 gtgatttatggtcaatttcgacccaaaatcacc--tccaaattgtttttctttcttttttagttaaataagtgattt 24114740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 198 - 274
Target Start/End: Original strand, 17347584 - 17347660
Alignment:
Q  198 tgatttatggtcaattttgacccacaatcacccatcagaattgtttttccttcttttctaattgaataagtgatttc 274  Q
    ||||||| |||||||||||||| | ||||||||||| || |||||||| ||||| |  |||  ||||||||||||||    
T  17347584 tgatttagggtcaattttgaccaaaaatcacccatccgagttgttttttcttctatcataaaggaataagtgatttc 17347660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 223 - 274
Target Start/End: Original strand, 44517158 - 44517209
Alignment:
Q  223 aatcacccatcagaattgtttttccttcttttctaattgaataagtgatttc 274  Q
    |||||||| || ||||||||||||||||| | |||||| |||||||||||||    
T  44517158 aatcacccttccgaattgtttttccttctatcctaattcaataagtgatttc 44517209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 274
Target Start/End: Complemental strand, 4871163 - 4871085
Alignment:
Q  197 gtgatttatggtcaattttgacccacaa-tcacccatcagaattgtttttccttcttttctaattgaataagtgatttc 274  Q
    |||||||| | ||||||||||| || || |||||  || ||||||||||||||| | |||||||||||||||| |||||    
T  4871163 gtgatttaagatcaattttgactcataaatcaccactccgaattgtttttccttttattctaattgaataagttatttc 4871085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 274
Target Start/End: Original strand, 12871605 - 12871683
Alignment:
Q  197 gtgatttatggtcaattttgaccc-acaatcacccatcagaattgtttttccttcttttctaattgaataagtgatttc 274  Q
    |||||||| ||||||||||||||| | |||||||| || || ||||||||| || | | ||||| ||||||||||||||    
T  12871605 gtgatttagggtcaattttgacccaaaaatcacccctccgagttgtttttcattatatcctaatcgaataagtgatttc 12871683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 274
Target Start/End: Original strand, 42490877 - 42490955
Alignment:
Q  197 gtgatttatggtcaattttgacccacaa-tcacccatcagaattgtttttccttcttttctaattgaataagtgatttc 274  Q
    |||||||| |||||| ||||||| | || |||||| || |||||||||||| |||| |  |||||||||||||||||||    
T  42490877 gtgatttagggtcaagtttgacctaaaaatcacccctccgaattgtttttcgttctatcttaattgaataagtgatttc 42490955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 197 - 273
Target Start/End: Complemental strand, 13488673 - 13488596
Alignment:
Q  197 gtgatttatggtcaattttgacccacaa-tcacccatcagaattgtttttccttcttttctaattgaataagtgattt 273  Q
    |||||||| |||| ||||||||||| || ||||||||| || |||||||||||||     ||||||||||||||||||    
T  13488673 gtgatttagggtcgattttgacccaaaaatcacccatccgatttgtttttccttccaccttaattgaataagtgattt 13488596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 198 - 274
Target Start/End: Original strand, 27534684 - 27534761
Alignment:
Q  198 tgatttatggtcaattttgaccc-acaatcacccatcagaattgtttttccttcttttctaattgaataagtgatttc 274  Q
    ||||||| ||||||||||||||| | ||||| || || || ||||||||||||||    |||||||||||||||||||    
T  27534684 tgatttagggtcaattttgacccaaaaatcatccctccgatttgtttttccttctaccttaattgaataagtgatttc 27534761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 191 - 274
Target Start/End: Original strand, 14265262 - 14265346
Alignment:
Q  191 agatgagtgatttatggtcaattttgacccacaa-tcacccatcagaattgtttttccttcttttctaattgaataagtgatttc 274  Q
    ||||| |||||||| |||||||||||||  | || |||||| || ||  ||||||||||||| | |||||| |||||||||||||    
T  14265262 agatgggtgatttagggtcaattttgacaaaaaaatcacccctccgagctgtttttccttctatcctaattaaataagtgatttc 14265346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 4e-22; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 193 - 273
Target Start/End: Original strand, 53402610 - 53402691
Alignment:
Q  193 atgagtgatttatggtcaattttgacccacaa-tcacccatcagaattgtttttccttcttttctaattgaataagtgattt 273  Q
    |||||||||||| |||||||||||||||| || ||||||||| ||||||||||||||||| |||||||| ||||||||||||    
T  53402610 atgagtgatttaaggtcaattttgacccaaaaatcacccatccgaattgtttttccttctattctaattcaataagtgattt 53402691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 210 - 275
Target Start/End: Complemental strand, 39429632 - 39429567
Alignment:
Q  210 aattttgacccacaatcacccatcagaattgtttttccttcttttctaattgaataagtgatttcc 275  Q
    |||||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||| |||||    
T  39429632 aattttgacccaaaatcacccatctgaattgtttttccttcttttctaattgaacaagtgctttcc 39429567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 197 - 272
Target Start/End: Complemental strand, 1075038 - 1074962
Alignment:
Q  197 gtgatttatggtcaattttgacccacaa-tcacccatcagaattgtttttccttcttttctaattgaataagtgatt 272  Q
    ||||||||||||||||||||||||| || ||||||||| || |||||||||||| | ||||||||||||||||||||    
T  1075038 gtgatttatggtcaattttgacccaaaaatcacccatccgagttgtttttccttatattctaattgaataagtgatt 1074962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 197 - 274
Target Start/End: Complemental strand, 34961003 - 34960925
Alignment:
Q  197 gtgatttatggtcaattttgacccacaa-tcacccatcagaattgtttttccttcttttctaattgaataagtgatttc 274  Q
    |||| ||| |||||||||||||||| || |||||| |||||||||||||| ||||| ||||||||||||||||||||||    
T  34961003 gtgacttagggtcaattttgacccaaaaatcacccctcagaattgttttttcttctattctaattgaataagtgatttc 34960925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 197 - 273
Target Start/End: Original strand, 3456927 - 3457004
Alignment:
Q  197 gtgatttatggtcaattttgacccacaa-tcacccatcagaattgtttttccttcttttctaattgaataagtgattt 273  Q
    ||||||||||||||||||||| ||| || |||||  || ||||||||||||||||| | |||||||||||||||||||    
T  3456927 gtgatttatggtcaattttgatccaaaaatcacctctccgaattgtttttccttctatcctaattgaataagtgattt 3457004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 191 - 274
Target Start/End: Original strand, 31270304 - 31270388
Alignment:
Q  191 agatgagtgatttatggtcaattttgacccacaa-tcacccatcagaattgtttttccttcttttctaattgaataagtgatttc 274  Q
    ||||| |||||||| |||||||||||||||| || |||||| |  ||||| ||||||||||| | ||||||||||||||||||||    
T  31270304 agatgggtgatttagggtcaattttgacccaaaaatcaccccttcgaattatttttccttctatcctaattgaataagtgatttc 31270388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 197 - 274
Target Start/End: Complemental strand, 36691944 - 36691866
Alignment:
Q  197 gtgatttatggtcaattttgacccacaa-tcacccatcagaattgtttttccttcttttctaattgaataagtgatttc 274  Q
    |||||||| |||||||||||||||| || |||||| || || || ||||||||||| | ||||||||||||||||||||    
T  36691944 gtgatttagggtcaattttgacccaaaaatcacccctccgagttatttttccttctatcctaattgaataagtgatttc 36691866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 197 - 274
Target Start/End: Complemental strand, 53155575 - 53155497
Alignment:
Q  197 gtgatttatggtcaattttgacccacaa-tcacccatcagaattgtttttccttcttttctaattgaataagtgatttc 274  Q
    |||||||| |||||||||||||||| || ||||||||  ||||||||||||||| | | |||||| |||||||||||||    
T  53155575 gtgatttagggtcaattttgacccaaaaatcacccattcgaattgtttttccttatatcctaattcaataagtgatttc 53155497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 197 - 273
Target Start/End: Complemental strand, 31462891 - 31462814
Alignment:
Q  197 gtgatttatggtcaattttgacccacaa-tcacccatcagaattgtttttccttcttttctaattgaataagtgattt 273  Q
    |||||||| |||||||||||||||| || |||||| |  ||||||||||||||| | | |||||||||||||||||||    
T  31462891 gtgatttagggtcaattttgacccaaaaatcaccccttcgaattgtttttccttatatcctaattgaataagtgattt 31462814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 207 - 274
Target Start/End: Complemental strand, 24483813 - 24483745
Alignment:
Q  207 gtcaattttgacccacaa-tcacccatcagaattgtttttccttcttttctaattgaataagtgatttc 274  Q
    |||||||||||| ||||| ||||||||| |||||||||||| |||| |  |||||||||||||||||||    
T  24483813 gtcaattttgacacacaaatcacccatctgaattgtttttcattctatcataattgaataagtgatttc 24483745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 223 - 274
Target Start/End: Complemental strand, 54239136 - 54239085
Alignment:
Q  223 aatcacccatcagaattgtttttccttcttttctaattgaataagtgatttc 274  Q
    |||||| |||| ||||||||||||||||| | ||||||||||||||||||||    
T  54239136 aatcacacatccgaattgtttttccttctatcctaattgaataagtgatttc 54239085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 197 - 274
Target Start/End: Original strand, 11819067 - 11819145
Alignment:
Q  197 gtgatttatggtcaattttgaccc-acaatcacccatcagaattgtttttccttcttttctaattgaataagtgatttc 274  Q
    |||||||| ||||||||||||||| | |||||||| || || ||||||||||||||    |||||||||||||||||||    
T  11819067 gtgatttagggtcaattttgacccaaaaatcacccctccgatttgtttttccttctaccttaattgaataagtgatttc 11819145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 197 - 274
Target Start/End: Original strand, 14585446 - 14585524
Alignment:
Q  197 gtgatttatggtcaattttgacccacaa-tcacccatcagaattgtttttccttcttttctaattgaataagtgatttc 274  Q
    ||||||||  ||||||||||||||| || |||| | ||  |||||||||||||||| | ||||||||||||||||||||    
T  14585446 gtgatttagagtcaattttgacccaaaaatcactcctctaaattgtttttccttctatcctaattgaataagtgatttc 14585524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 197 - 274
Target Start/End: Complemental strand, 30156426 - 30156349
Alignment:
Q  197 gtgatttatggtcaattttgacccacaa-tcacccatcagaattgtttttccttcttttctaattgaataagtgatttc 274  Q
    |||||||| |||||||||||||||| || |||||| || |||||||||| |||| | | ||||||||||||||||||||    
T  30156426 gtgatttagggtcaattttgacccaaaaatcacccctccgaattgtttt-ccttttatcctaattgaataagtgatttc 30156349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 197 - 274
Target Start/End: Original strand, 48400883 - 48400961
Alignment:
Q  197 gtgatttatggtcaattttgacccacaa-tcacccatcagaattgtttttccttcttttctaattgaataagtgatttc 274  Q
    |||||||| |||||||||||||||| || |||| |||| |||||||||||||||||   ||| || |||||||||||||    
T  48400883 gtgatttagggtcaattttgacccaaaaatcacacatcggaattgtttttccttctaccctattttaataagtgatttc 48400961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 206 - 274
Target Start/End: Original strand, 35174697 - 35174766
Alignment:
Q  206 ggtcaattttgacccacaa-tcacccatcagaattgtttttccttcttttctaattgaataagtgatttc 274  Q
    ||||||||| |||||| || |||||| |  ||||||||||||||||| | ||||||||||||||||||||    
T  35174697 ggtcaatttcgacccaaaaatcacccctttgaattgtttttccttctatcctaattgaataagtgatttc 35174766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 206 - 274
Target Start/End: Complemental strand, 49628223 - 49628154
Alignment:
Q  206 ggtcaattttgacccacaa-tcacccatcagaattgtttttccttcttttctaattgaataagtgatttc 274  Q
    |||||||||||||| | || |||||| || ||||||||||||||||| | ||| ||||||||||||||||    
T  49628223 ggtcaattttgacctaaaaatcacccctctgaattgtttttccttctatcctagttgaataagtgatttc 49628154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 191 - 274
Target Start/End: Complemental strand, 32080905 - 32080821
Alignment:
Q  191 agatgagtgatttatggtcaattttgaccc-acaatcacccatcagaattgtttttccttcttttctaattgaataagtgatttc 274  Q
    ||||| |||||||| ||||||||||||||| | |||||||| || || ||||||||||||||    |||||||||| ||||||||    
T  32080905 agatgggtgatttagggtcaattttgacccaaaaatcacccctccgatttgtttttccttctaccttaattgaataggtgatttc 32080821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 223 - 274
Target Start/End: Complemental strand, 36624812 - 36624761
Alignment:
Q  223 aatcacccatcagaattgtttttccttcttttctaattgaataagtgatttc 274  Q
    ||||||||||| ||||||||||||||||| | |||| | |||||||||||||    
T  36624812 aatcacccatccgaattgtttttccttctatcctaactaaataagtgatttc 36624761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 197 - 274
Target Start/End: Complemental strand, 40013420 - 40013339
Alignment:
Q  197 gtgatttatggtcaattttgacccacaa-tcacccatcagaattgtttttccttct---tttctaattgaataagtgatttc 274  Q
    ||||||||  ||||||||||||||| || ||||||||  |||||||||||||||||    | ||||||||||||||||||||    
T  40013420 gtgatttagtgtcaattttgacccaaaaatcacccattcgaattgtttttccttctatcctcctaattgaataagtgatttc 40013339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 274
Target Start/End: Complemental strand, 4206656 - 4206578
Alignment:
Q  197 gtgatttatggtcaattttgacccacaa-tcacccatcagaattgtttttccttcttttctaattgaataagtgatttc 274  Q
    ||||||||||||||||||||| | | || |||||| || ||||||||||||| | | | ||||||||||||||| ||||    
T  4206656 gtgatttatggtcaattttgatcaaaaaatcacccctccgaattgtttttccatatatcctaattgaataagtgttttc 4206578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 274
Target Start/End: Complemental strand, 13702117 - 13702039
Alignment:
Q  197 gtgatttatggtcaattttgacccacaa-tcacccatcagaattgtttttccttcttttctaattgaataagtgatttc 274  Q
    |||||||| |||||||||||||||| || |||||| |  ||||| |||||| |||| |  |||||||||||||||||||    
T  13702117 gtgatttagggtcaattttgacccaaaagtcaccccttcgaattatttttctttctatcataattgaataagtgatttc 13702039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 274
Target Start/End: Original strand, 19645205 - 19645283
Alignment:
Q  197 gtgatttatggtcaattttgacccacaatc-acccatcagaattgtttttccttcttttctaattgaataagtgatttc 274  Q
    |||||||| |||||||||||||| | || | | ||||| ||||||||||| ||||| | |||||| |||||||||||||    
T  19645205 gtgatttagggtcaattttgacctaaaaaccatccatccgaattgttttttcttctgtcctaattaaataagtgatttc 19645283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 209 - 274
Target Start/End: Original strand, 22484961 - 22485027
Alignment:
Q  209 caattttgacccacaa-tcacccatcagaattgtttttccttcttttctaattgaataagtgatttc 274  Q
    ||||||||||||| || |||| | || | ||||||||||||||| | ||||||||||||||||||||    
T  22484961 caattttgacccaaaaatcactcttccggattgtttttccttctatcctaattgaataagtgatttc 22485027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 274
Target Start/End: Complemental strand, 48652585 - 48652507
Alignment:
Q  197 gtgatttatggtcaattttgacccacaa-tcacccatcagaattgtttttccttcttttctaattgaataagtgatttc 274  Q
    |||||||| |||||| ||||||||| || |||||| || || ||||||||||||||    |||||||||||||||||||    
T  48652585 gtgatttagggtcaactttgacccaaaaatcacccctccgatttgtttttccttctaccttaattgaataagtgatttc 48652507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 174 - 275
Target Start/End: Original strand, 53962087 - 53962188
Alignment:
Q  174 tttttcttgtctaatgaagatgagtgatttatggtcaattttgacccacaatcacccatcagaattgtttttccttcttttctaattgaataagtgattt 273  Q
    ||||||||||||| | |||| | |||||||||| |||||||||| ||| |||||  | ||  ||| ||||| ||||||||| || |  ||||||||||||    
T  53962087 tttttcttgtctactaaagaggggtgatttatgatcaattttgatccaaaatcattcgtctaaatggttttcccttcttttttagtcaaataagtgattt 53962186  T
Q  274 cc 275  Q
    ||    
T  53962187 cc 53962188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 191 - 274
Target Start/End: Original strand, 17699531 - 17699615
Alignment:
Q  191 agatgagtgatttatggtcaattttgacccacaa-tcacccatcagaattgtttttccttcttttctaattgaataagtgatttc 274  Q
    |||||||||||||| |||||||||||||||| || |||||| || ||||||||||||||||| | ||||||||||||||||||||    
T  17699531 agatgagtgatttagggtcaattttgacccaaaaatcacccctccgaattgtttttccttctatcctaattgaataagtgatttc 17699615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 197 - 273
Target Start/End: Original strand, 6281028 - 6281105
Alignment:
Q  197 gtgatttatggtcaattttgacccacaa-tcacccatcagaattgtttttccttcttttctaattgaataagtgattt 273  Q
    ||||||||||||||||||||||||| || |||||| || ||||| ||||||||||| |||||||||||||||||||||    
T  6281028 gtgatttatggtcaattttgacccaaaaatcacccctctgaattatttttccttctattctaattgaataagtgattt 6281105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 191 - 274
Target Start/End: Original strand, 27241042 - 27241126
Alignment:
Q  191 agatgagtgatttatggtcaattttgacccacaa-tcacccatcagaattgtttttccttcttttctaattgaataagtgatttc 274  Q
    ||||| |||||||||| |||||||||||||| || |||||| || ||||||||||||||| | | ||||||||||||||||||||    
T  27241042 agatgggtgatttatgatcaattttgacccaaaaatcacccctctgaattgtttttccttttatcctaattgaataagtgatttc 27241126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 197 - 274
Target Start/End: Original strand, 43493856 - 43493934
Alignment:
Q  197 gtgatttatggtcaattttgacccacaa-tcacccatcagaattgtttttccttcttttctaattgaataagtgatttc 274  Q
    |||||||| |||||||||||| ||| || |||||  || ||||||||||||||||| ||||||||||||||||||||||    
T  43493856 gtgatttagggtcaattttgatccaaaaatcacctctccgaattgtttttccttctattctaattgaataagtgatttc 43493934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 198 - 274
Target Start/End: Original strand, 34431045 - 34431122
Alignment:
Q  198 tgatttatggtcaattttgacccacaa-tcacccatcagaattgtttttccttcttttctaattgaataagtgatttc 274  Q
    ||||||| |||||||||||||||| || ||||||||  ||||||||||| ||||| || |||||||||||||||||||    
T  34431045 tgatttagggtcaattttgacccaaaaatcacccattcgaattgttttttcttctattttaattgaataagtgatttc 34431122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 197 - 274
Target Start/End: Original strand, 17331312 - 17331390
Alignment:
Q  197 gtgatttatggtcaattttgacccacaa-tcacccatcagaattgtttttccttcttttctaattgaataagtgatttc 274  Q
    |||||||| |||||||||||||||| || |||||| || || |||||||||||||| |  |||||||||||||||||||    
T  17331312 gtgatttagggtcaattttgacccaaaaatcacccctccgatttgtttttccttctatcttaattgaataagtgatttc 17331390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 197 - 274
Target Start/End: Original strand, 42609128 - 42609206
Alignment:
Q  197 gtgatttatggtcaattttgacccacaa-tcacccatcagaattgtttttccttcttttctaattgaataagtgatttc 274  Q
    |||||||| |||||||||||||| | || |||| |||| ||||||||||| ||||| | ||||||||||||||||||||    
T  42609128 gtgatttagggtcaattttgacctaaaaatcactcatccgaattgttttttcttctatcctaattgaataagtgatttc 42609206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 214 - 274
Target Start/End: Complemental strand, 39179947 - 39179887
Alignment:
Q  214 ttgacccacaatcacccatcagaattgtttttccttcttttctaattgaataagtgatttc 274  Q
    |||||||  |||||||| || ||||| ||||||||||| ||||||||||||||||||||||    
T  39179947 ttgaccctaaatcacccctccgaattatttttccttctattctaattgaataagtgatttc 39179887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 191 - 274
Target Start/End: Complemental strand, 39531544 - 39531462
Alignment:
Q  191 agatgagtgatttatggtcaattttgacccacaatcacccatcagaattgtttttccttcttttctaattgaataagtgatttc 274  Q
    ||||| |||||||| |||||||||||||||| ||||| || || || ||| |||||||||| |  |||||||||||||||||||    
T  39531544 agatgggtgatttaaggtcaattttgacccaaaatcatccctccgagttg-ttttccttctatcgtaattgaataagtgatttc 39531462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 197 - 274
Target Start/End: Original strand, 28040613 - 28040691
Alignment:
Q  197 gtgatttatggtcaattttgacccacaa-tcacccatcagaattgtttttccttcttttctaattgaataagtgatttc 274  Q
    |||||||| |||||||||||||||| || |||||| ||  ||| |||||||||| | | ||||||||||||||||||||    
T  28040613 gtgatttacggtcaattttgacccaaaaatcacccctccaaatcgtttttccttatatcctaattgaataagtgatttc 28040691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 197 - 274
Target Start/End: Original strand, 29097773 - 29097851
Alignment:
Q  197 gtgatttatggtcaattttgacccaca-atcacccatcagaattgtttttccttcttttctaattgaataagtgatttc 274  Q
    |||||||| |||||||||||||||| | ||||||| || || ||||||||||||||    |||||||||||||||||||    
T  29097773 gtgatttagggtcaattttgacccaaagatcacccctccgatttgtttttccttctaccttaattgaataagtgatttc 29097851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 197 - 274
Target Start/End: Complemental strand, 33164605 - 33164527
Alignment:
Q  197 gtgatttatggtcaattttgac-ccacaatcacccatcagaattgtttttccttcttttctaattgaataagtgatttc 274  Q
    |||||||||||||||||||||| | | |||||| | || |||||||||||||||||    |||||||||||||||||||    
T  33164605 gtgatttatggtcaattttgactcaaaaatcactcctccgaattgtttttccttctaccttaattgaataagtgatttc 33164527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 197 - 273
Target Start/End: Complemental strand, 26295195 - 26295118
Alignment:
Q  197 gtgatttatggtcaattttgacccacaa-tcacccatcagaattgtttttccttcttttctaattgaataagtgattt 273  Q
    |||||||| |||||||||||| ||| || |||||| || ||| ||||||||||||| | || ||||||||||||||||    
T  26295195 gtgatttagggtcaattttgatccaaaaatcacccctccgaagtgtttttccttctatccttattgaataagtgattt 26295118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 197 - 252
Target Start/End: Complemental strand, 7771943 - 7771887
Alignment:
Q  197 gtgatttatggtcaattttgacccacaa-tcacccatcagaattgtttttccttctt 252  Q
    |||||||| |||||||||||||||| || |||||| || ||||||||||||||||||    
T  7771943 gtgatttagggtcaattttgacccaaaaatcacccctccgaattgtttttccttctt 7771887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 197 - 274
Target Start/End: Complemental strand, 32347852 - 32347773
Alignment:
Q  197 gtgatttatggtcaattttgacccacaa-tcacccatcagaattgttttt-ccttcttttctaattgaataagtgatttc 274  Q
    |||||||| |||||| ||||||||| || |||||| || || |||||||| |||||| | ||||||||||||||||||||    
T  32347852 gtgatttagggtcaactttgacccaaaaatcacccctccgacttgttttttccttctatcctaattgaataagtgatttc 32347773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 274
Target Start/End: Original strand, 3740342 - 3740419
Alignment:
Q  197 gtgatttatggtcaattttgacccacaa-tcacccatcagaattgtttttccttcttttctaattgaataagtgatttc 274  Q
    |||||||| ||| ||||||||| || || ||| ||||| |||||||||| |||||| | ||||||||||||||||||||    
T  3740342 gtgatttagggttaattttgactcaaaaatcatccatctgaattgtttt-ccttctatcctaattgaataagtgatttc 3740419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 3e-20; HSPs: 30)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 197 - 274
Target Start/End: Original strand, 33012061 - 33012139
Alignment:
Q  197 gtgatttatggtcaattttgacccacaa-tcacccatcagaattgtttttccttcttttctaattgaataagtgatttc 274  Q
    |||||||| |||||||||||||||| || |||| |||| ||||||||||||||||| ||||||||||||||||||||||    
T  33012061 gtgatttagggtcaattttgacccaaaaatcactcatccgaattgtttttccttctattctaattgaataagtgatttc 33012139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 197 - 274
Target Start/End: Complemental strand, 43474265 - 43474187
Alignment:
Q  197 gtgatttatggtcaattttgacccacaa-tcacccatcagaattgtttttccttcttttctaattgaataagtgatttc 274  Q
    |||||||| |||||||||||||||| || ||||||||| ||||||||||||||||| | ||||||||||||||||||||    
T  43474265 gtgatttagggtcaattttgacccaaaaatcacccatccgaattgtttttccttctatcctaattgaataagtgatttc 43474187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 170 - 275
Target Start/End: Complemental strand, 17767715 - 17767610
Alignment:
Q  170 tttctttttcttgtctaatgaagatgagtgatttatggtcaattttgacccacaatcacccatcagaattgtttttccttcttttctaattgaataagtg 269  Q
    |||||| ||||||||||  ||||||| ||||||||  ||||||||||||||| |||||||| |  || |||||||||||| | | |||||| ||||||||    
T  17767715 tttcttcttcttgtctaccgaagatgggtgatttagagtcaattttgacccagaatcaccccttcgagttgtttttccttatatcctaattaaataagtg 17767616  T
Q  270 atttcc 275  Q
    ||||||    
T  17767615 atttcc 17767610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 191 - 274
Target Start/End: Original strand, 44942263 - 44942347
Alignment:
Q  191 agatgagtgatttatggtcaattttgacccacaa-tcacccatcagaattgtttttccttcttttctaattgaataagtgatttc 274  Q
    ||||| ||||||||||||||||||||||||| || |||||| || || |||||||| ||||| | ||||||||||||||||||||    
T  44942263 agatgggtgatttatggtcaattttgacccaaaaatcacccctccgagttgttttttcttctatcctaattgaataagtgatttc 44942347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 197 - 274
Target Start/End: Original strand, 25067836 - 25067914
Alignment:
Q  197 gtgatttatggtcaattttgacccacaa-tcacccatcagaattgtttttccttcttttctaattgaataagtgatttc 274  Q
    |||||||| |||||||||||||||| || |||||| || || |||||||||||||| || |||||||||||||||||||    
T  25067836 gtgatttagggtcaattttgacccaaaaatcacccctccgatttgtttttccttctattttaattgaataagtgatttc 25067914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 191 - 274
Target Start/End: Original strand, 27095683 - 27095767
Alignment:
Q  191 agatgagtgatttatggtcaattttgacccacaa-tcacccatcagaattgtttttccttcttttctaattgaataagtgatttc 274  Q
    ||||| |||||||| |||||||||||||| | || |||||| || || |||||||||||||| | ||||||||||||||||||||    
T  27095683 agatgggtgatttagggtcaattttgacctaaaaatcacccctccgagttgtttttccttctatcctaattgaataagtgatttc 27095767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 197 - 274
Target Start/End: Complemental strand, 11937996 - 11937917
Alignment:
Q  197 gtgatttatggtcaattttgaccc-acaatcacccatcagaattgtttttcc-ttcttttctaattgaataagtgatttc 274  Q
    |||||||| ||||||||||||||| | |||||||| || ||||||||||||| |||| | ||||||||||||||||||||    
T  11937996 gtgatttagggtcaattttgacccaaaaatcacccctccgaattgtttttcctttctatcctaattgaataagtgatttc 11937917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 177 - 275
Target Start/End: Complemental strand, 45694610 - 45694512
Alignment:
Q  177 ttcttgtctaatgaagatgag-tgatttatggtcaattttgacccacaatcacccatcagaattgtttttccttcttttctaattgaataagtgatttcc 275  Q
    ||||| |||| |||||||| | ||||||| ||| ||||||||| || |||||| |||| |||||||||| | || |||||||||||||||||||||||||    
T  45694610 ttcttttctattgaagatggggtgatttacggtaaattttgactcaaaatcactcatccgaattgtttt-cattattttctaattgaataagtgatttcc 45694512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 197 - 274
Target Start/End: Complemental strand, 4604444 - 4604366
Alignment:
Q  197 gtgatttatggtcaattttgacccacaa-tcacccatcagaattgtttttccttcttttctaattgaataagtgatttc 274  Q
    |||||||| |||||||||||||||| || | || |||  || |||||||||||||| ||||||||||||||||||||||    
T  4604444 gtgatttaaggtcaattttgacccaaaaattactcattcgagttgtttttccttctattctaattgaataagtgatttc 4604366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 197 - 274
Target Start/End: Original strand, 12704671 - 12704749
Alignment:
Q  197 gtgatttatggtcaattttgacccacaa-tcacccatcagaattgtttttccttcttttctaattgaataagtgatttc 274  Q
    |||||||| |||||||||||||||| || |||||| |  ||||||||||||||| | | ||||||||||||||||||||    
T  12704671 gtgatttagggtcaattttgacccaaaaatcaccccttcgaattgtttttccttatatcctaattgaataagtgatttc 12704749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 197 - 274
Target Start/End: Complemental strand, 17268261 - 17268183
Alignment:
Q  197 gtgatttatggtcaattttgacccacaa-tcacccatcagaattgtttttccttcttttctaattgaataagtgatttc 274  Q
    ||||||||||||||||||||||||| || ||| || |  || |||||||||||||| | ||||||||||||||||||||    
T  17268261 gtgatttatggtcaattttgacccaaaaatcatcccttcgagttgtttttccttctatcctaattgaataagtgatttc 17268183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 197 - 274
Target Start/End: Original strand, 36867992 - 36868070
Alignment:
Q  197 gtgatttatggtcaattttgacccacaa-tcacccatcagaattgtttttccttcttttctaattgaataagtgatttc 274  Q
    |||||||| ||||||||||||| || || |||||| || ||||||||||||||||| |||||||| |||||| ||||||    
T  36867992 gtgatttagggtcaattttgactcaaaaatcacccctctgaattgtttttccttctattctaattcaataagcgatttc 36868070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 198 - 274
Target Start/End: Complemental strand, 13740795 - 13740719
Alignment:
Q  198 tgatttatggtcaattttgacccacaa-tcacccatcagaattgtttttccttcttttctaattgaataagtgatttc 274  Q
    ||||||||||||| |||||||||| || |||||  || ||||||||||||||||| | ||||||||||||||||||||    
T  13740795 tgatttatggtca-ttttgacccaaaaatcaccactccgaattgtttttccttctatcctaattgaataagtgatttc 13740719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 198 - 274
Target Start/End: Original strand, 35333490 - 35333567
Alignment:
Q  198 tgatttatggtcaattttgacccacaa-tcacccatcagaattgtttttccttcttttctaattgaataagtgatttc 274  Q
    ||||||| | |||||||||||||| || |||||| | ||||||||||||||| || | ||||||||||||||||||||    
T  35333490 tgatttaggatcaattttgacccaaaaatcacccctaagaattgtttttcctgctatcctaattgaataagtgatttc 35333567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 133 - 274
Target Start/End: Original strand, 5754211 - 5754350
Alignment:
Q  133 ctctcttctcttcttctcaaaccccaaccgtcattattttctttttcttgtctaatgaagatgagtgatttatggtcaattttgacccacaa-tcaccca 231  Q
    |||||||||||  ||||||||||| | ||||||| |||||||| ||||| | |     ||| | |||||||| |||||||||||||||| || ||| ||     
T  5754211 ctctcttctctcattctcaaaccctagccgtcatcattttcttcttcttcttttt---agaggggtgatttagggtcaattttgacccaaaaatcatccc 5754307  T
Q  232 tcagaattgtttttccttcttttctaattgaataagtgatttc 274  Q
    || ||||||||||||||||| | ||| |||||||| |||||||    
T  5754308 tccgaattgtttttccttctatcctagttgaataaatgatttc 5754350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 197 - 271
Target Start/End: Complemental strand, 9690110 - 9690035
Alignment:
Q  197 gtgatttatggtcaattttgacccacaa-tcacccatcagaattgtttttccttcttttctaattgaataagtgat 271  Q
    |||||||| |||||| ||||||||| || |||||| || ||| ||||||||||||| | |||||||||||||||||    
T  9690110 gtgatttaaggtcaaatttgacccaaaaatcacccctccgaactgtttttccttctatcctaattgaataagtgat 9690035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 197 - 274
Target Start/End: Original strand, 15919858 - 15919936
Alignment:
Q  197 gtgatttatggtcaattttgacccacaa-tcacccatcagaattgtttttccttcttttctaattgaataagtgatttc 274  Q
    ||||||||  ||||||||||||||| || |||||| || || |||||||||||||| | |||||||||||| |||||||    
T  15919858 gtgatttagagtcaattttgacccaaaaatcacccctccgagttgtttttccttctatcctaattgaataaatgatttc 15919936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 197 - 274
Target Start/End: Complemental strand, 20561269 - 20561191
Alignment:
Q  197 gtgatttatggtcaattttgacccacaa-tcacccatcagaattgtttttccttcttttctaattgaataagtgatttc 274  Q
    |||||||| |||||||||||||||| || |||||| || ||||||||||||||||| | | ||| ||||||||| ||||    
T  20561269 gtgatttagggtcaattttgacccaaaaatcacccctccgaattgtttttccttctatccaaatcgaataagtggtttc 20561191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 197 - 274
Target Start/End: Original strand, 22597119 - 22597197
Alignment:
Q  197 gtgatttatggtcaattttgacccacaa-tcacccatcagaattgtttttccttcttttctaattgaataagtgatttc 274  Q
    |||||||| |||||||||||||||| || ||| || || || |||||||||||||| | |||||| |||||||||||||    
T  22597119 gtgatttaaggtcaattttgacccaaaaatcatccctccgagttgtttttccttctatcctaattaaataagtgatttc 22597197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 197 - 254
Target Start/End: Complemental strand, 17116542 - 17116485
Alignment:
Q  197 gtgatttatggtcaattttgacccacaatcacccatcagaattgtttttccttctttt 254  Q
    ||||||||||||||||||||||| | ||||| || || ||||||||||||||| ||||    
T  17116542 gtgatttatggtcaattttgacctaaaatcatccgtccgaattgtttttccttttttt 17116485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 191 - 251
Target Start/End: Complemental strand, 28262036 - 28261975
Alignment:
Q  191 agatgagtgatttatggtcaattttgaccc-acaatcacccatcagaattgtttttccttct 251  Q
    ||||| |||||||| ||||||||||||||| | |||||| |||| |||||||||||||||||    
T  28262036 agatgggtgatttagggtcaattttgacccaaaaatcactcatccgaattgtttttccttct 28261975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 196 - 275
Target Start/End: Complemental strand, 11798654 - 11798575
Alignment:
Q  196 agtgatttatggtcaattttgacccacaatcacccatcagaattgtttttccttcttttctaattgaataagtgatttcc 275  Q
    |||||||||||||||||||||||||| |||||||| ||    ||| |||||||| | | |||||| ||||||| ||||||    
T  11798654 agtgatttatggtcaattttgacccaaaatcacccctccatgttgcttttccttatatcctaattaaataagtaatttcc 11798575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 208 - 254
Target Start/End: Complemental strand, 12994338 - 12994292
Alignment:
Q  208 tcaattttgacccacaatcacccatcagaattgtttttccttctttt 254  Q
    ||||||||||| || |||||| |||| ||||||||||||||||||||    
T  12994338 tcaattttgactcaaaatcactcatctgaattgtttttccttctttt 12994292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 274
Target Start/End: Complemental strand, 18089529 - 18089451
Alignment:
Q  197 gtgatttatggtcaattttgacccacaa-tcacccatcagaattgtttttccttcttttctaattgaataagtgatttc 274  Q
    |||||||| |||||||||||| ||| || |||| | || ||||||||||| ||| | | ||||||||||||||||||||    
T  18089529 gtgatttagggtcaattttgatccaaaaatcactcctccgaattgttttttcttatatcctaattgaataagtgatttc 18089451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 274
Target Start/End: Complemental strand, 38535442 - 38535364
Alignment:
Q  197 gtgatttatggtcaattttgacccacaat-cacccatcagaattgtttttccttcttttctaattgaataagtgatttc 274  Q
    |||||||| |||||||||||||||| ||  ||||| |  ||||| ||||||||||| |  |||||||||||||||||||    
T  38535442 gtgatttagggtcaattttgacccaaaaagcacccctttgaattttttttccttctatcataattgaataagtgatttc 38535364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 206 - 274
Target Start/End: Complemental strand, 34416889 - 34416820
Alignment:
Q  206 ggtcaattttgacccacaa-tcacccatcagaattgtttttccttcttttctaattgaataagtgatttc 274  Q
    |||||||||||||| | || ||| || || ||||||||||||||| | | ||||||||||||||||||||    
T  34416889 ggtcaattttgaccaaaaaatcatccctccgaattgtttttccttatatcctaattgaataagtgatttc 34416820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 197 - 268
Target Start/End: Complemental strand, 7073085 - 7073013
Alignment:
Q  197 gtgatttatggtcaattttgacccacaa-tcacccatcagaattgtttttccttcttttctaattgaataagt 268  Q
    |||||||| |||||||||||||||| || || ||| |  |||||| |||||||||| | ||||||||||||||    
T  7073085 gtgatttagggtcaattttgacccaaaaatcgccctttcgaattggttttccttctatcctaattgaataagt 7073013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 197 - 273
Target Start/End: Complemental strand, 15261549 - 15261473
Alignment:
Q  197 gtgatttatggtcaattttgacccacaatcacccatcagaattgtttttccttcttttctaattgaataagtgattt 273  Q
    |||||| || ||||||||||||||  |||||||| || |||||||||||| |||| || ||  | ||||||||||||    
T  15261549 gtgattcatcgtcaattttgacccgaaatcacccttccgaattgtttttctttctcttttagctaaataagtgattt 15261473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 197 - 273
Target Start/End: Complemental strand, 17055184 - 17055108
Alignment:
Q  197 gtgatttatggtcaattttgacccacaatcacccatcagaattgtttttccttcttttctaattgaataagtgattt 273  Q
    ||||||||  ||||||||||| ||| || ||| |||| |||||| ||||||||||||| || || ||| ||||||||    
T  17055184 gtgatttagagtcaattttgatccaaaaccactcatccgaattgattttccttcttttttatttaaattagtgattt 17055108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 214 - 274
Target Start/End: Complemental strand, 28231216 - 28231156
Alignment:
Q  214 ttgacccacaatcacccatcagaattgtttttccttcttttctaattgaataagtgatttc 274  Q
    |||||||  ||||||||||| ||||||||||||||||| |  |  ||||||||||||||||    
T  28231216 ttgaccctaaatcacccatccgaattgtttttccttctatcttggttgaataagtgatttc 28231156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 170 - 275
Target Start/End: Complemental strand, 22049568 - 22049463
Alignment:
Q  170 tttctttttcttgtctaatgaagatgagtgatttatggtcaattttgacccacaatcacccatcagaattgtttttccttcttttctaattgaataagtg 269  Q
    |||||| ||||||||||  ||| | | |||||||| ||| |||||||||||| |||||||| |  ||||||||||||||||| | |||||||||||||||    
T  22049568 tttcttcttcttgtctaccgaacaagggtgatttagggttaattttgacccaaaatcaccctttcgaattgtttttccttctatcctaattgaataagtg 22049469  T
Q  270 atttcc 275  Q
    ||||||    
T  22049468 atttcc 22049463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 197 - 274
Target Start/End: Complemental strand, 43244518 - 43244440
Alignment:
Q  197 gtgatttatggtcaattttgacccacaa-tcacccatcagaattgtttttccttcttttctaattgaataagtgatttc 274  Q
    |||||||| |||||||||||||||| || |||||| || ||||||||||||||||| | ||||||||||||||||||||    
T  43244518 gtgatttagggtcaattttgacccaaaaatcacccctctgaattgtttttccttctatcctaattgaataagtgatttc 43244440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 197 - 274
Target Start/End: Complemental strand, 394411 - 394333
Alignment:
Q  197 gtgatttatggtcaattttgacccacaa-tcacccatcagaattgtttttccttcttttctaattgaataagtgatttc 274  Q
    |||||||| |||||||||||||||| || |||||| || ||||||||||||||||| | |||||| |||||||||||||    
T  394411 gtgatttagggtcaattttgacccaaaaatcacccctccgaattgtttttccttctatcctaattcaataagtgatttc 394333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 197 - 274
Target Start/End: Original strand, 31521966 - 31522044
Alignment:
Q  197 gtgatttatggtcaattttgacccacaa-tcacccatcagaattgtttttccttcttttctaattgaataagtgatttc 274  Q
    |||||||| |||||||||||||| | || |||||| || ||||||||||||||||| | ||||||||||||||||||||    
T  31521966 gtgatttagggtcaattttgacctaaaaatcacccctccgaattgtttttccttctatcctaattgaataagtgatttc 31522044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 197 - 274
Target Start/End: Complemental strand, 44757179 - 44757101
Alignment:
Q  197 gtgatttatggtcaattttgacccacaa-tcacccatcagaattgtttttccttcttttctaattgaataagtgatttc 274  Q
    |||||||| |||||||||||||||| || ||||||||  || |||||||||||||| | ||||||||||||||||||||    
T  44757179 gtgatttaaggtcaattttgacccaaaaatcacccattcgagttgtttttccttctatcctaattgaataagtgatttc 44757101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 197 - 273
Target Start/End: Complemental strand, 478148 - 478072
Alignment:
Q  197 gtgatttatggtcaattttgacccacaa-tcacccatcagaattgtttttccttcttttctaattgaataagtgattt 273  Q
    ||||||||||||||||||||||||| || ||||| ||| ||||||||||||||| | | |||||||||||||||||||    
T  478148 gtgatttatggtcaattttgacccaaaaatcacc-atccgaattgtttttccttatatcctaattgaataagtgattt 478072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 198 - 274
Target Start/End: Original strand, 13965545 - 13965622
Alignment:
Q  198 tgatttatggtcaattttgacccacaa-tcacccatcagaattgtttttccttcttttctaattgaataagtgatttc 274  Q
    ||||||| |||||||||||||||| || |||||| |  ||||||||||||||||| | ||||||||||||||||||||    
T  13965545 tgatttagggtcaattttgacccaaaaatcaccccttcgaattgtttttccttctatcctaattgaataagtgatttc 13965622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 191 - 274
Target Start/End: Complemental strand, 26742606 - 26742522
Alignment:
Q  191 agatgagtgatttatggtcaattttgacccacaa-tcacccatcagaattgtttttccttcttttctaattgaataagtgatttc 274  Q
    ||||| |||||||| | |||||||||||||| || ||||||||| |||||||||||| |||| |  |||||||||||||||||||    
T  26742606 agatgggtgatttaggatcaattttgacccaaaaatcacccatccgaattgtttttctttctatcttaattgaataagtgatttc 26742522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 200 - 274
Target Start/End: Original strand, 7060311 - 7060386
Alignment:
Q  200 atttatggtcaattttgacccacaa-tcacccatcagaattgtttttccttcttttctaattgaataagtgatttc 274  Q
    ||||| |||||||||| ||||| || |||||| || ||||||||||||||||| | ||||||||||||||||||||    
T  7060311 atttagggtcaattttaacccaaaaatcacccctccgaattgtttttccttctatcctaattgaataagtgatttc 7060386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 197 - 274
Target Start/End: Original strand, 51152109 - 51152187
Alignment:
Q  197 gtgatttatggtcaattttgacccacaa-tcacccatcagaattgtttttccttcttttctaattgaataagtgatttc 274  Q
    |||||||| ||||||| |||||||| || |||||| || ||||||||||||||||| | |||||| |||||||||||||    
T  51152109 gtgatttanggtcaatattgacccaaaaatcacccctccgaattgtttttccttctatcctaatttaataagtgatttc 51152187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 197 - 274
Target Start/End: Original strand, 8712514 - 8712592
Alignment:
Q  197 gtgatttatggtcaattttgacccacaa-tcacccatcagaattgtttttccttcttttctaattgaataagtgatttc 274  Q
    |||||||| |||||||||||||||| || |||||| ||| |||||||||||||||| | ||| |||| |||||||||||    
T  8712514 gtgatttagggtcaattttgacccaaaaatcacccctcataattgtttttccttctatcctagttgagtaagtgatttc 8712592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 197 - 274
Target Start/End: Original strand, 22757078 - 22757156
Alignment:
Q  197 gtgatttatggtcaattttgacccacaa-tcacccatcagaattgtttttccttcttttctaattgaataagtgatttc 274  Q
    |||||||| ||||||||||||| || || |||||  || ||||||||||||||||| | ||||||||||||||||||||    
T  22757078 gtgatttagggtcaattttgactcaaaaatcaccactccgaattgtttttccttctatcctaattgaataagtgatttc 22757156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 197 - 274
Target Start/End: Complemental strand, 29268914 - 29268836
Alignment:
Q  197 gtgatttatggtcaattttgaccc-acaatcacccatcagaattgtttttccttcttttctaattgaataagtgatttc 274  Q
    |||||||| ||||||||||||||| | |||||||| || || |||||||||||| | | ||||||||||||||||||||    
T  29268914 gtgatttaaggtcaattttgaccctaaaatcacccctccgagttgtttttccttttatcctaattgaataagtgatttc 29268836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 197 - 273
Target Start/End: Complemental strand, 24568850 - 24568773
Alignment:
Q  197 gtgatttatggtcaattttgacccacaa-tcacccatcagaattgtttttccttcttttctaattgaataagtgattt 273  Q
    |||||||| ||| |||||||||||| || |||||| || ||||| ||||||||||| | |||||||||||||||||||    
T  24568850 gtgatttagggtgaattttgacccaaaaatcacccttccgaattatttttccttctatcctaattgaataagtgattt 24568773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 199 - 274
Target Start/End: Complemental strand, 20400038 - 20399962
Alignment:
Q  199 gatttatggtcaattttgacccacaa-tcacccatcagaattgtttttccttcttttctaattgaataagtgatttc 274  Q
    |||||| |||||||||||||||| || ||||||| | |||||| |||| ||||| | ||||||||||||||||||||    
T  20400038 gatttagggtcaattttgacccaaaaatcacccacccgaattgctttttcttctatcctaattgaataagtgatttc 20399962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 136 - 275
Target Start/End: Complemental strand, 12717314 - 12717176
Alignment:
Q  136 tcttctcttcttctcaaaccccaaccgtcattattttctttttcttgtctaatgaagatgagtgatttatggtcaattttgacccacaatcacccatcag 235  Q
    |||||||| ||||||||| || | || ||  | ||||||| |||||||||| ||||   | ||||||||  ||||||||||||||| ||||| || || |    
T  12717314 tcttctctccttctcaaatcctagccatcgattttttcttcttcttgtctattgaaagag-gtgatttagagtcaattttgacccaaaatcatccgtccg 12717216  T
Q  236 aattgtttttccttcttttctaattgaataagtgatttcc 275  Q
    | |||||||| ||||| | |||||| ||||||||||||||    
T  12717215 acttgttttttcttctatcctaattaaataagtgatttcc 12717176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 190 - 273
Target Start/End: Complemental strand, 29235410 - 29235327
Alignment:
Q  190 aagatgagtgatttatggtcaattttgacccacaatcacccatcagaattgtttttccttcttttctaattgaataagtgattt 273  Q
    |||||| |||||||||| ||||||||||| || ||||| || ||  ||||||||||||||| | || ||||||| |||||||||    
T  29235410 aagatgggtgatttatgatcaattttgactcaaaatcaaccctcctaattgtttttccttcatgtccaattgaacaagtgattt 29235327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 190 - 252
Target Start/End: Original strand, 12754151 - 12754213
Alignment:
Q  190 aagatgagtgatttatggtcaattttgacccacaatcacccatcagaattgtttttccttctt 252  Q
    ||||||||||||||||| |||||||||||||| || | || ||| |||||||||||| |||||    
T  12754151 aagatgagtgatttatgatcaattttgacccaaaaacgccaatccgaattgtttttctttctt 12754213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 197 - 274
Target Start/End: Original strand, 24100123 - 24100201
Alignment:
Q  197 gtgatttatggtcaattttgacccacaa-tcacccatcagaattgtttttccttcttttctaattgaataagtgatttc 274  Q
    |||||||| | |||||||||| ||| || | ||||||| ||||||||||||||||| |  |||||||||||||||||||    
T  24100123 gtgatttaggatcaattttgaaccaaaaattacccatccgaattgtttttccttctatcgtaattgaataagtgatttc 24100201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 197 - 273
Target Start/End: Original strand, 27394814 - 27394891
Alignment:
Q  197 gtgatttatggtcaattttgacccacaa-tcacccatcagaattgtttttccttcttttctaattgaataagtgattt 273  Q
    |||||||| |||||||||||||||| || |||||| || | ||| ||||||||||| | |||||||||||||| ||||    
T  27394814 gtgatttagggtcaattttgacccaaaaatcacccttccggattatttttccttctatcctaattgaataagtaattt 27394891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 200 - 274
Target Start/End: Complemental strand, 7083950 - 7083875
Alignment:
Q  200 atttatggtcaattttgacccacaa-tcacccatcagaattgtttttccttcttttctaattgaataagtgatttc 274  Q
    ||||| |||||||||||| ||| || |||||| |  ||||||||||||||||| |  |||||||||||||||||||    
T  7083950 atttagggtcaattttgatccaaaaatcacccctatgaattgtttttccttctatcataattgaataagtgatttc 7083875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 274
Target Start/End: Original strand, 24825633 - 24825711
Alignment:
Q  197 gtgatttatggtcaattttgacccacaa-tcacccatcagaattgtttttccttcttttctaattgaataagtgatttc 274  Q
    |||||||| | |||||||||||| | || |||| | || || |||||||||||||| | ||||||||||||||||||||    
T  24825633 gtgatttaggatcaattttgacctaaaaatcactcctccgagttgtttttccttctatcctaattgaataagtgatttc 24825711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 236 - 274
Target Start/End: Original strand, 25658191 - 25658229
Alignment:
Q  236 aattgtttttccttcttttctaattgaataagtgatttc 274  Q
    |||||||||||||||||| |||||| |||||||||||||    
T  25658191 aattgtttttccttctttcctaatttaataagtgatttc 25658229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 191 - 274
Target Start/End: Complemental strand, 7861348 - 7861264
Alignment:
Q  191 agatgagtgatttatggtcaattttgacccacaa-tcacccatcagaattgtttttccttcttttctaattgaataagtgatttc 274  Q
    ||||| ||||||||   |||||||||||||| || |||||  || ||||| ||||||||||| | |||||| |||||||||||||    
T  7861348 agatgggtgatttagaatcaattttgacccaaaaatcaccactctgaattatttttccttctatcctaattaaataagtgatttc 7861264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 191 - 274
Target Start/End: Original strand, 26674350 - 26674434
Alignment:
Q  191 agatgagtgatttatggtcaattttgacccacaa-tcacccatcagaattgtttttccttcttttctaattgaataagtgatttc 274  Q
    ||||| |||||||| | |||||||||||| | || |||||| ||  ||||| |||||||||| |  |||||||||||||||||||    
T  26674350 agatgggtgatttaggatcaattttgacctaaaaatcacccctccaaattgcttttccttctatcataattgaataagtgatttc 26674434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 226 - 274
Target Start/End: Complemental strand, 43493394 - 43493346
Alignment:
Q  226 cacccatcagaattgtttttccttcttttctaattgaataagtgatttc 274  Q
    ||||| || ||||||||||||||||| |  |||||||||||||||||||    
T  43493394 cacccctccgaattgtttttccttctatcttaattgaataagtgatttc 43493346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0155 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 197 - 274
Target Start/End: Original strand, 35066 - 35144
Alignment:
Q  197 gtgatttatggtcaattttgacccacaa-tcacccatcagaattgtttttccttcttttctaattgaataagtgatttc 274  Q
    |||||||| |||||||||||||||| || ||||||||| || |||||||||||||| | ||||||||||||||||||||    
T  35066 gtgatttagggtcaattttgacccaaaaatcacccatccgagttgtttttccttctatcctaattgaataagtgatttc 35144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 7e-18; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 198 - 274
Target Start/End: Original strand, 11833003 - 11833081
Alignment:
Q  198 tgatttatggtcaattttgacccacaa-tcaccca-tcagaattgtttttccttcttttctaattgaataagtgatttc 274  Q
    |||||||||||||||||||||||| || ||||||  || ||||||||||||||||||| ||||||||||||||||||||    
T  11833003 tgatttatggtcaattttgacccaaaaatcaccccctccgaattgtttttccttctttcctaattgaataagtgatttc 11833081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 197 - 274
Target Start/End: Original strand, 21603447 - 21603524
Alignment:
Q  197 gtgatttatggtcaattttgacccacaatcacccatcagaattgtttttccttcttttctaattgaataagtgatttc 274  Q
    |||||||| |||||||||||||| | || ||||| || ||||||||||||||||| | ||||||||||||||||||||    
T  21603447 gtgatttagggtcaattttgaccaaaaagcacccctctgaattgtttttccttctatcctaattgaataagtgatttc 21603524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 191 - 274
Target Start/End: Complemental strand, 28665055 - 28664971
Alignment:
Q  191 agatgagtgatttatggtcaattttgaccc-acaatcacccatcagaattgtttttccttcttttctaattgaataagtgatttc 274  Q
    ||||| |||||||| ||||||||||||||| | |||||||| || || |||||||||||||| | ||||||||||||||||||||    
T  28665055 agatgggtgatttagggtcaattttgaccctaaaatcacccctccgagttgtttttccttctatcctaattgaataagtgatttc 28664971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 197 - 274
Target Start/End: Original strand, 27535440 - 27535518
Alignment:
Q  197 gtgatttatggtcaattttgacccacaa-tcacccatcagaattgtttttccttcttttctaattgaataagtgatttc 274  Q
    |||||||| |||||||||| | ||| || ||||||||| ||||||||||||||||| ||||||||| ||||||||||||    
T  27535440 gtgatttagggtcaatttttatccaaaaatcacccatccgaattgtttttccttctattctaattgtataagtgatttc 27535518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 197 - 274
Target Start/End: Complemental strand, 48304532 - 48304454
Alignment:
Q  197 gtgatttatggtcaattttgacccacaa-tcacccatcagaattgtttttccttcttttctaattgaataagtgatttc 274  Q
    |||||||| |||||||||||||||| || ||||||||| |||||| ||||||| || | ||||||||||||||||||||    
T  48304532 gtgatttagggtcaattttgacccaaaaatcacccatccgaattgcttttcctgctatcctaattgaataagtgatttc 48304454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 197 - 273
Target Start/End: Complemental strand, 46026166 - 46026089
Alignment:
Q  197 gtgatttatggtcaattttgacccacaa-tcacccatcagaattgtttttccttcttttctaattgaataagtgattt 273  Q
    |||||||| |||||||||||||||| || |||| |||| ||||||||||||||||| | |||||||||||||| ||||    
T  46026166 gtgatttagggtcaattttgacccaaaaatcacacatccgaattgtttttccttctatcctaattgaataagttattt 46026089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 191 - 274
Target Start/End: Complemental strand, 1281280 - 1281196
Alignment:
Q  191 agatgagtgatttatggtcaattttgacccacaa-tcacccatcagaattgtttttccttcttttctaattgaataagtgatttc 274  Q
    ||||| |||||||| |||| ||||||||| | || ||||||||| |||||||||||| || | ||||||||||||||||||||||    
T  1281280 agatgggtgatttagggtccattttgaccaaaaaatcacccatccgaattgtttttcattatattctaattgaataagtgatttc 1281196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 198 - 272
Target Start/End: Complemental strand, 36579448 - 36579373
Alignment:
Q  198 tgatttatggtcaattttgaccc-acaatcacccatcagaattgtttttccttcttttctaattgaataagtgatt 272  Q
    ||||||| ||||||||||||||| | |||||||| || ||||||||||||||||| | ||| ||||||||||||||    
T  36579448 tgatttagggtcaattttgacccgaaaatcacccctccgaattgtttttccttctatcctagttgaataagtgatt 36579373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 197 - 274
Target Start/End: Original strand, 9785301 - 9785379
Alignment:
Q  197 gtgatttatggtcaattttgacccacaa-tcacccatcagaattgtttttccttcttttctaattgaataagtgatttc 274  Q
    |||||||| |||||||||||||||| || |||||| |  ||||||||||||||||| |  |||||||||||||||||||    
T  9785301 gtgatttagggtcaattttgacccaaaaatcaccccttcgaattgtttttccttctatcttaattgaataagtgatttc 9785379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 197 - 274
Target Start/End: Complemental strand, 17473860 - 17473782
Alignment:
Q  197 gtgatttatggtcaattttgacccacaa-tcacccatcagaattgtttttccttcttttctaattgaataagtgatttc 274  Q
    |||||||| |||||||||||||| | || |||||| || ||||||||||||||| | | ||||||||||||||||||||    
T  17473860 gtgatttagggtcaattttgaccaaaaaatcacccctccgaattgtttttccttttatcctaattgaataagtgatttc 17473782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 197 - 274
Target Start/End: Original strand, 17579354 - 17579432
Alignment:
Q  197 gtgatttatggtcaattttgacccacaa-tcacccatcagaattgtttttccttcttttctaattgaataagtgatttc 274  Q
    |||||||| |||||||||||||| | || |||||| || ||||||||||||||| | | ||||||||||||||||||||    
T  17579354 gtgatttagggtcaattttgaccaaaaaatcacccctccgaattgtttttccttttatcctaattgaataagtgatttc 17579432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 197 - 274
Target Start/End: Complemental strand, 42603906 - 42603828
Alignment:
Q  197 gtgatttatggtcaattttgacccacaa-tcacccatcagaattgtttttccttcttttctaattgaataagtgatttc 274  Q
    |||||||||||||||||||||| || || |||||| || |||||||||||| |||| |  |||||||||||||||||||    
T  42603906 gtgatttatggtcaattttgactcaaaaatcacccctccgaattgtttttcattctatcataattgaataagtgatttc 42603828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 195 - 274
Target Start/End: Original strand, 6667377 - 6667458
Alignment:
Q  195 gagtgatttatggtcaattttgaccc-acaatcacccatcagaattgtttttccttcttttctaa-ttgaataagtgatttc 274  Q
    |||||||||| ||||||||||||||| | ||||||||  | ||||||||||| ||||| |||||| ||||||||||||||||    
T  6667377 gagtgatttagggtcaattttgacccaaaaatcaccccaccgaattgttttttcttctattctaatttgaataagtgatttc 6667458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 195 - 274
Target Start/End: Original strand, 45482046 - 45482126
Alignment:
Q  195 gagtgatttatggtcaattttgaccc-acaatcacccatcagaattgtttttccttcttttctaattgaataagtgatttc 274  Q
    |||||||||| ||||||||||||||| | |||||||| || ||  ||||||||||||| | |||||| |||||||||||||    
T  45482046 gagtgatttagggtcaattttgaccccaaaatcacccctccgagctgtttttccttctatcctaattaaataagtgatttc 45482126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 197 - 274
Target Start/End: Original strand, 5684349 - 5684427
Alignment:
Q  197 gtgatttatggtcaattttgacccacaa-tcacccatcagaattgtttttccttcttttctaattgaataagtgatttc 274  Q
    |||||||| ||||||||||||| || || |||||  || |||||||||||| |||| | ||||||||||||||||||||    
T  5684349 gtgatttagggtcaattttgacgcaaaaatcacctctccgaattgtttttcattctatcctaattgaataagtgatttc 5684427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 197 - 274
Target Start/End: Original strand, 5709399 - 5709477
Alignment:
Q  197 gtgatttatggtcaattttgacccacaa-tcacccatcagaattgtttttccttcttttctaattgaataagtgatttc 274  Q
    |||||||| ||||||||||||| || || |||||  || |||||||||||| |||| | ||||||||||||||||||||    
T  5709399 gtgatttagggtcaattttgacgcaaaaatcacctctccgaattgtttttcattctatcctaattgaataagtgatttc 5709477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 197 - 274
Target Start/End: Complemental strand, 39533112 - 39533034
Alignment:
Q  197 gtgatttatggtcaattttgacccacaa-tcacccatcagaattgtttttccttcttttctaattgaataagtgatttc 274  Q
    |||||||| |||||||||||||||| || ||| |  || ||||||||||||||||| |  |||||||||||||||||||    
T  39533112 gtgatttagggtcaattttgacccaaaaatcatctctctgaattgtttttccttctatcttaattgaataagtgatttc 39533034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 197 - 274
Target Start/End: Original strand, 42644660 - 42644738
Alignment:
Q  197 gtgatttatggtcaattttgacccacaa-tcacccatcagaattgtttttccttcttttctaattgaataagtgatttc 274  Q
    |||||||| | ||||||||||| || || |||| |||  ||||||||||||||||| | ||||||||||||||||||||    
T  42644660 gtgatttaggatcaattttgactcaaaaatcactcatttgaattgtttttccttctatcctaattgaataagtgatttc 42644738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 197 - 274
Target Start/End: Complemental strand, 45457693 - 45457615
Alignment:
Q  197 gtgatttatggtcaattttgacccacaa-tcacccatcagaattgtttttccttcttttctaattgaataagtgatttc 274  Q
    |||||||| ||||||||||||| || || |||| | || ||||||||||||||||| |  |||||||||||||||||||    
T  45457693 gtgatttagggtcaattttgacgcaaaaatcactcctccgaattgtttttccttctatcttaattgaataagtgatttc 45457615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 207 - 274
Target Start/End: Original strand, 2622586 - 2622654
Alignment:
Q  207 gtcaattttgacccacaa-tcacccatcagaattgtttttccttcttttctaattgaataagtgatttc 274  Q
    ||||||||||||||| || |||| |||| ||||||||||||||||| |  ||||||||||||| |||||    
T  2622586 gtcaattttgacccaaaaatcacgcatccgaattgtttttccttctatcttaattgaataagtaatttc 2622654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 191 - 266
Target Start/End: Original strand, 10574359 - 10574435
Alignment:
Q  191 agatgagtgatttatggtcaattttgacccacaa-tcacccatcagaattgtttttccttcttttctaattgaataa 266  Q
    ||||| |||||||| ||||||||||||| || || |||||| || ||||||||||||||| | | ||||||||||||    
T  10574359 agatgggtgatttagggtcaattttgactcaaaaatcacccctccgaattgtttttccttttatcctaattgaataa 10574435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 235 - 274
Target Start/End: Original strand, 32740776 - 32740815
Alignment:
Q  235 gaattgtttttccttcttttctaattgaataagtgatttc 274  Q
    ||||||||||||||||| | ||||||||||||||||||||    
T  32740776 gaattgtttttccttctatcctaattgaataagtgatttc 32740815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 275
Target Start/End: Original strand, 39707274 - 39707352
Alignment:
Q  197 gtgatttatggtcaattttgacccacaatcacccatcagaattgtttttccttcttttctaattgaataagtgatttcc 275  Q
    |||||||| |||||||||||||||| ||||| |  || || ||||||||| |||| | |||||| ||||||| ||||||    
T  39707274 gtgatttagggtcaattttgacccaaaatcatcactccgagttgtttttctttctatcctaattaaataagttatttcc 39707352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 198 - 274
Target Start/End: Complemental strand, 17509339 - 17509263
Alignment:
Q  198 tgatttatggtcaattttgacccacaa-tcacccatcagaattgtttttccttcttttctaattgaataagtgatttc 274  Q
    ||||||| |||||||||||||| | || |||||| || ||||| ||||||||| | | ||||||||||||||||||||    
T  17509339 tgatttagggtcaattttgaccaaaaaatcaccc-tccgaattatttttccttttatcctaattgaataagtgatttc 17509263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 198 - 274
Target Start/End: Original strand, 17543875 - 17543951
Alignment:
Q  198 tgatttatggtcaattttgacccacaa-tcacccatcagaattgtttttccttcttttctaattgaataagtgatttc 274  Q
    ||||||| |||||||||||||| | || |||||| || ||||| ||||||||| | | ||||||||||||||||||||    
T  17543875 tgatttagggtcaattttgaccaaaaaatcaccc-tccgaattatttttccttttatcctaattgaataagtgatttc 17543951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 197 - 273
Target Start/End: Complemental strand, 22747644 - 22747568
Alignment:
Q  197 gtgatttatggtcaattttgacccacaa-tcacccatcagaattgtttttccttcttttctaattgaataagtgattt 273  Q
    |||||||| |||||||||||||||| || |||||| ||  | ||||||| |||||| | |||||||||||||||||||    
T  22747644 gtgatttagggtcaattttgacccaaaaatcacccctccaagttgtttt-ccttctatcctaattgaataagtgattt 22747568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0056 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0056
Description:

Target: scaffold0056; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 195 - 274
Target Start/End: Original strand, 74146 - 74226
Alignment:
Q  195 gagtgatttatggtcaattttgacccacaa-tcacccatcagaattgtttttccttcttttctaattgaataagtgatttc 274  Q
    ||||||||||   |||||||||||||| || ||||||||| ||||||||||||||||| | ||||||||||||||||||||    
T  74146 gagtgatttagaatcaattttgacccaaaaatcacccatccgaattgtttttccttctatcctaattgaataagtgatttc 74226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0312 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0312
Description:

Target: scaffold0312; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 197 - 274
Target Start/End: Original strand, 6121 - 6199
Alignment:
Q  197 gtgatttatggtcaattttgacccacaa-tcacccatcagaattgtttttccttcttttctaattgaataagtgatttc 274  Q
    |||||||| |||||||||||||||| || |||||| || || |||||||||||||| | ||||||||||||||||||||    
T  6121 gtgatttagggtcaattttgacccaaaaatcacccctccgagttgtttttccttctatcctaattgaataagtgatttc 6199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 197 - 274
Target Start/End: Complemental strand, 15590216 - 15590138
Alignment:
Q  197 gtgatttatggtcaattttgacccacaa-tcacccatcagaattgtttttccttcttttctaattgaataagtgatttc 274  Q
    |||||||| |||||||||||||||| || |||||| || ||||||||||| ||||| | ||||||||||||||||||||    
T  15590216 gtgatttagggtcaattttgacccaaaaatcacccctctgaattgttttttcttctatcctaattgaataagtgatttc 15590138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 197 - 274
Target Start/End: Complemental strand, 8693797 - 8693716
Alignment:
Q  197 gtgatttatggtcaattttgacccacaa-tcacccatcagaattgtttttccttct---tttctaattgaataagtgatttc 274  Q
    |||||||| |||||||||||||||| || ||||||||| |||||||||||||||||    | ||||||||||||||||||||    
T  8693797 gtgatttaaggtcaattttgacccaaaaatcacccatccgaattgtttttccttctatcctcctaattgaataagtgatttc 8693716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 197 - 274
Target Start/End: Complemental strand, 6419995 - 6419917
Alignment:
Q  197 gtgatttatggtcaattttgacccacaa-tcacccatcagaattgtttttccttcttttctaattgaataagtgatttc 274  Q
    |||||||| |||||||||||| ||| || |||||| || || |||||||||||||| | ||||||||||||||||||||    
T  6419995 gtgatttagggtcaattttgatccaaaaatcacccctctgagttgtttttccttctatcctaattgaataagtgatttc 6419917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 195 - 273
Target Start/End: Complemental strand, 15470373 - 15470295
Alignment:
Q  195 gagtgatttatggtcaattttgacccacaatcacccatcagaattgtttttccttcttttctaattgaataagtgattt 273  Q
    ||||||||| ||||||||||||||||| |||||||| || ||| |||||||| |||| || || || ||||||||||||    
T  15470373 gagtgatttttggtcaattttgacccaaaatcacccctctgaaatgtttttctttctattttacttaaataagtgattt 15470295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 197 - 274
Target Start/End: Complemental strand, 21507945 - 21507867
Alignment:
Q  197 gtgatttatggtcaattttgacccaca-atcacccatcagaattgtttttccttcttttctaattgaataagtgatttc 274  Q
    |||||||| |||||||||||||||| | ||||||| ||  |||||||||||||||| | ||| ||||||||||||||||    
T  21507945 gtgatttagggtcaattttgacccaaacatcacccctccaaattgtttttccttctatcctagttgaataagtgatttc 21507867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 198 - 274
Target Start/End: Complemental strand, 14783307 - 14783230
Alignment:
Q  198 tgatttatggtcaattttgacccacaa-tcacccatcagaattgtttttccttcttttctaattgaataagtgatttc 274  Q
    ||||||| |||||||||||||||| || |||| | || ||||||||||||||||| | ||| ||||||||||||||||    
T  14783307 tgatttagggtcaattttgacccaaaaatcacgcctccgaattgtttttccttctatcctagttgaataagtgatttc 14783230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 191 - 265
Target Start/End: Complemental strand, 29927522 - 29927447
Alignment:
Q  191 agatgagtgatttatggtcaattttgaccc-acaatcacccatcagaattgtttttccttcttttctaattgaata 265  Q
    |||||||||||||||||||||||||||||| | |||||| | ||  | |||||||||||||| | |||||||||||    
T  29927522 agatgagtgatttatggtcaattttgacccaaaaatcactcctccaagttgtttttccttctatcctaattgaata 29927447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 195 - 273
Target Start/End: Original strand, 15175795 - 15175873
Alignment:
Q  195 gagtgatttatggtcaattttgacccacaatcacccatcagaattgtttttccttcttttctaattgaataagtgattt 273  Q
    |||||||||  |||||||||||||||| |||||||| || ||| |||||||| |||| || || || ||||||||||||    
T  15175795 gagtgattttcggtcaattttgacccaaaatcacccctccgaaatgtttttctttctattttacttaaataagtgattt 15175873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 197 - 274
Target Start/End: Original strand, 23654234 - 23654312
Alignment:
Q  197 gtgatttatggtcaattttgaccc-acaatcacccatcagaattgtttttccttcttttctaattgaataagtgatttc 274  Q
    |||||||| ||||||||||||||| | ||||||||||| || ||||||||||||||    ||| |||||||||||||||    
T  23654234 gtgatttagggtcaattttgacccaaaaatcacccatccgatttgtttttccttctaccttaactgaataagtgatttc 23654312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 197 - 274
Target Start/End: Complemental strand, 31937555 - 31937478
Alignment:
Q  197 gtgatttatggtcaattttgacccacaa-tcacccatcagaattgtttttccttcttttctaattgaataagtgatttc 274  Q
    |||||||| ||||| |||||||||| || |||||| || |||||||||||| |||| | ||||||||||||||||||||    
T  31937555 gtgatttagggtcagttttgacccaaaaatcacccctccgaattgtttttc-ttctatcctaattgaataagtgatttc 31937478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 274
Target Start/End: Complemental strand, 12481507 - 12481429
Alignment:
Q  197 gtgatttatggtcaattttgacccacaa-tcacccatcagaattgtttttccttcttttctaattgaataagtgatttc 274  Q
    |||||||| | |||||||||||||| || |||||| || || ||||||||||||||    |||||||||||||||||||    
T  12481507 gtgatttaggatcaattttgacccaaaaatcacccctccgatttgtttttccttctaccttaattgaataagtgatttc 12481429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1379 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold1379
Description:

Target: scaffold1379; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 197 - 274
Target Start/End: Complemental strand, 1223 - 1145
Alignment:
Q  197 gtgatttatggtcaattttgacccacaa-tcacccatcagaattgtttttccttcttttctaattgaataagtgatttc 274  Q
    |||||||| |||||||||||||||| || |||||| |  |||||||||||||||||   ||||||||||||||||||||    
T  1223 gtgatttaaggtcaattttgacccaaaaatcacccctgcgaattgtttttccttctaccctaattgaataagtgatttc 1145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0536 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0536
Description:

Target: scaffold0536; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 197 - 274
Target Start/End: Original strand, 2884 - 2964
Alignment:
Q  197 gtgatttatggtcaattttgacccac-aatcacccatcagaattgtttt--tccttcttttctaattgaataagtgatttc 274  Q
    |||||||| ||||||||||||||||  |||||||| || || |||||||  ||||||| | ||||||||||||||||||||    
T  2884 gtgatttagggtcaattttgacccaataatcacccctccgagttgtttttttccttctatcctaattgaataagtgatttc 2964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 199 - 274
Target Start/End: Complemental strand, 404393 - 404317
Alignment:
Q  199 gatttatggtcaattttgacccacaa-tcacccatcagaattgtttttccttcttttctaattgaataagtgatttc 274  Q
    |||||| |||||||||||| ||| || ||||||||| |||| ||||||| | || | ||||||||||||||||||||    
T  404393 gatttaaggtcaattttgatccaaaaatcacccatccgaatagtttttcttgctatcctaattgaataagtgatttc 404317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0321 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0321
Description:

Target: scaffold0321; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 223 - 274
Target Start/End: Complemental strand, 7234 - 7183
Alignment:
Q  223 aatcacccatcagaattgtttttccttcttttctaattgaataagtgatttc 274  Q
    |||||||| || ||||||||||||||| | | ||||||||||||||||||||    
T  7234 aatcacccctccgaattgtttttccttttatcctaattgaataagtgatttc 7183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0580 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: scaffold0580
Description:

Target: scaffold0580; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 195 - 273
Target Start/End: Complemental strand, 917 - 840
Alignment:
Q  195 gagtgatttatggtcaattttgacccacaatcacccatcagaattgtttttccttcttttctaattgaataagtgattt 273  Q
    ||||||||| |||||||||||||| || |||||||| || ||| |||||||| |||| || || || ||||||||||||    
T  917 gagtgatttttggtcaattttgactcaaaatcaccc-tccgaaatgtttttctttctattttacttaaataagtgattt 840  T

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Target: scaffold0580; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 195 - 273
Target Start/End: Complemental strand, 8656 - 8579
Alignment:
Q  195 gagtgatttatggtcaattttgacccacaatcacccatcagaattgtttttccttcttttctaattgaataagtgattt 273  Q
    ||||||||| |||||||||||||| || |||||||| || ||| |||||||| |||| || || || ||||||||||||    
T  8656 gagtgatttttggtcaattttgactcaaaatcaccc-tccgaaatgtttttctttctattttacttaaataagtgattt 8579  T

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Target: scaffold0238 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0238
Description:

Target: scaffold0238; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 198 - 275
Target Start/End: Complemental strand, 15813 - 15736
Alignment:
Q  198 tgatttatggtcaattttgacccacaatcacccatcagaattgtttttccttcttttctaattgaataagtgatttcc 275  Q
    |||||| ||||||||||||||    ||||||| |||  ||||||||||| |||| || ||||| ||||||||||||||    
T  15813 tgatttttggtcaattttgacttgaaatcaccaatctaaattgtttttctttctcttttaattaaataagtgatttcc 15736  T

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