View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2588_high_5 (Length: 249)

Name: NF2588_high_5
Description: NF2588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2588_high_5
NF2588_high_5
[»] chr8 (31 HSPs)
chr8 (1-234)||(30039154-30039387)
chr8 (1-49)||(2234472-2234520)
chr8 (1-49)||(7579857-7579905)
chr8 (1-49)||(24791170-24791218)
chr8 (1-49)||(30026882-30026930)
chr8 (1-46)||(9501669-9501714)
chr8 (1-49)||(3204758-3204806)
chr8 (1-49)||(14600700-14600748)
chr8 (1-49)||(31308227-31308275)
chr8 (1-49)||(31407750-31407798)
chr8 (1-49)||(37612732-37612780)
chr8 (1-43)||(11161961-11162003)
chr8 (1-49)||(2968611-2968659)
chr8 (1-49)||(10338824-10338872)
chr8 (1-49)||(22787571-22787619)
chr8 (1-49)||(39067691-39067739)
chr8 (1-49)||(41361811-41361859)
chr8 (2-49)||(2025211-2025258)
chr8 (2-49)||(31202538-31202585)
chr8 (7-49)||(12329712-12329754)
chr8 (86-140)||(24210651-24210704)
chr8 (1-46)||(7281727-7281772)
chr8 (1-49)||(24699911-24699959)
chr8 (1-49)||(37128488-37128536)
chr8 (86-125)||(7579534-7579573)
chr8 (88-126)||(5526215-5526253)
chr8 (1-49)||(4757244-4757292)
chr8 (1-49)||(10148026-10148074)
chr8 (1-45)||(10334254-10334298)
chr8 (1-33)||(28297124-28297156)
chr8 (86-126)||(43936858-43936898)
[»] scaffold1379 (2 HSPs)
scaffold1379 (1-49)||(1080-1128)
scaffold1379 (1-49)||(54-102)
[»] chr5 (31 HSPs)
chr5 (1-49)||(18653861-18653909)
chr5 (1-49)||(17331407-17331455)
chr5 (1-49)||(28040708-28040756)
chr5 (1-49)||(33164462-33164510)
chr5 (1-49)||(39179822-39179870)
chr5 (1-48)||(12891755-12891802)
chr5 (1-49)||(2555344-2555392)
chr5 (1-49)||(6281123-6281171)
chr5 (1-49)||(6635329-6635377)
chr5 (1-49)||(7771815-7771863)
chr5 (1-49)||(17096233-17096281)
chr5 (1-49)||(178098-178148)
chr5 (1-46)||(17687284-17687329)
chr5 (4-49)||(23882110-23882155)
chr5 (1-49)||(3740436-3740484)
chr5 (1-49)||(11734813-11734861)
chr5 (1-49)||(29097868-29097916)
chr5 (1-49)||(34431139-34431187)
chr5 (1-49)||(42396506-42396554)
chr5 (2-49)||(3079299-3079346)
chr5 (2-45)||(32347712-32347755)
chr5 (1-42)||(35275989-35276030)
chr5 (1-49)||(6681870-6681918)
chr5 (1-49)||(12439628-12439676)
chr5 (1-33)||(17699632-17699664)
chr5 (1-49)||(32309242-32309290)
chr5 (2-49)||(585888-585935)
chr5 (86-125)||(6635659-6635698)
chr5 (6-49)||(20483270-20483313)
chr5 (1-49)||(12215214-12215260)
chr5 (86-126)||(42781412-42781452)
[»] chr4 (50 HSPs)
chr4 (1-49)||(5814426-5814474)
chr4 (1-49)||(7083810-7083858)
chr4 (1-49)||(11210307-11210355)
chr4 (1-49)||(20887750-20887798)
chr4 (1-49)||(24825728-24825776)
chr4 (1-49)||(30202117-30202165)
chr4 (1-49)||(38944142-38944190)
chr4 (2-49)||(28837145-28837192)
chr4 (1-49)||(13965639-13965687)
chr4 (1-49)||(29268771-29268819)
chr4 (1-49)||(43244375-43244423)
chr4 (1-49)||(50801296-50801344)
chr4 (2-49)||(13586234-13586281)
chr4 (2-49)||(22757174-22757221)
chr4 (2-49)||(45351064-45351111)
chr4 (2-49)||(45360543-45360590)
chr4 (1-46)||(7060403-7060448)
chr4 (1-46)||(36124346-36124391)
chr4 (1-49)||(394268-394316)
chr4 (1-49)||(6882035-6882083)
chr4 (1-49)||(6911759-6911807)
chr4 (1-49)||(8517450-8517498)
chr4 (1-49)||(8712609-8712657)
chr4 (1-49)||(12717111-12717159)
chr4 (1-49)||(25658246-25658294)
chr4 (1-49)||(26674451-26674499)
chr4 (1-49)||(27394909-27394957)
chr4 (1-49)||(29922916-29922964)
chr4 (1-49)||(43493281-43493329)
chr4 (1-49)||(44757036-44757084)
chr4 (2-49)||(24568707-24568754)
chr4 (2-49)||(24611793-24611840)
chr4 (2-49)||(42197634-42197681)
chr4 (1-49)||(19745468-19745517)
chr4 (1-49)||(19794289-19794338)
chr4 (1-42)||(20399904-20399945)
chr4 (1-49)||(478006-478054)
chr4 (1-49)||(626543-626591)
chr4 (2-42)||(7861207-7861247)
chr4 (1-49)||(24100220-24100268)
chr4 (6-49)||(2447884-2447927)
chr4 (86-125)||(55600217-55600256)
chr4 (86-126)||(8712919-8712959)
chr4 (2-30)||(22621513-22621541)
chr4 (1-49)||(26742457-26742505)
chr4 (1-49)||(27090804-27090851)
chr4 (86-126)||(27091119-27091159)
chr4 (2-42)||(35945992-35946032)
chr4 (1-49)||(39837674-39837722)
chr4 (1-49)||(51152204-51152251)
[»] chr2 (35 HSPs)
chr2 (1-49)||(27095784-27095832)
chr2 (1-49)||(9978663-9978711)
chr2 (1-49)||(15919952-15920000)
chr2 (1-49)||(20561126-20561174)
chr2 (1-46)||(38535302-38535347)
chr2 (1-49)||(7072942-7072990)
chr2 (1-49)||(12891113-12891161)
chr2 (1-49)||(25067931-25067979)
chr2 (1-49)||(36868087-36868135)
chr2 (2-49)||(33012157-33012204)
chr2 (1-46)||(28261885-28261930)
chr2 (1-49)||(4604301-4604349)
chr2 (5-49)||(4739412-4739456)
chr2 (1-49)||(5754367-5754415)
chr2 (1-49)||(10287000-10287048)
chr2 (1-49)||(12704766-12704814)
chr2 (1-49)||(22597214-22597262)
chr2 (1-49)||(35333584-35333632)
chr2 (1-49)||(41797673-41797721)
chr2 (1-49)||(43474122-43474170)
chr2 (2-49)||(4732150-4732197)
chr2 (11-49)||(29542881-29542919)
chr2 (12-49)||(34963070-34963107)
chr2 (1-49)||(13740654-13740702)
chr2 (1-49)||(13879001-13879048)
chr2 (1-49)||(14019126-14019173)
chr2 (1-49)||(28231091-28231139)
chr2 (1-49)||(31908810-31908858)
chr2 (6-49)||(17926283-17926326)
chr2 (86-125)||(34416434-34416473)
chr2 (1-48)||(44942364-44942411)
chr2 (12-49)||(17268120-17268157)
chr2 (1-49)||(32314521-32314569)
chr2 (1-49)||(11937852-11937900)
chr2 (1-49)||(34471045-34471093)
[»] chr7 (50 HSPs)
chr7 (1-49)||(1281131-1281179)
chr7 (1-49)||(36719546-36719594)
chr7 (1-46)||(14657818-14657863)
chr7 (1-49)||(24320217-24320265)
chr7 (1-49)||(26161059-26161107)
chr7 (1-49)||(28664906-28664954)
chr7 (1-49)||(46026023-46026071)
chr7 (2-49)||(9719967-9720014)
chr7 (2-49)||(45482144-45482191)
chr7 (1-49)||(3266467-3266515)
chr7 (1-49)||(4621361-4621409)
chr7 (1-49)||(9137037-9137085)
chr7 (1-49)||(10094520-10094568)
chr7 (1-49)||(10574460-10574508)
chr7 (1-49)||(11833098-11833146)
chr7 (1-49)||(15017370-15017418)
chr7 (1-49)||(15674606-15674654)
chr7 (1-49)||(21954812-21954860)
chr7 (1-49)||(21990741-21990789)
chr7 (1-49)||(36579306-36579354)
chr7 (1-49)||(42603763-42603811)
chr7 (3-46)||(43847151-43847194)
chr7 (11-49)||(36253019-36253057)
chr7 (6-48)||(43998940-43998982)
chr7 (1-49)||(5684444-5684492)
chr7 (1-49)||(5709494-5709542)
chr7 (1-49)||(9785396-9785444)
chr7 (1-49)||(17473717-17473765)
chr7 (1-49)||(17579449-17579497)
chr7 (1-49)||(22747502-22747550)
chr7 (1-49)||(32643091-32643139)
chr7 (1-49)||(32740832-32740880)
chr7 (1-49)||(41288037-41288085)
chr7 (1-49)||(45457550-45457598)
chr7 (6-49)||(6667479-6667522)
chr7 (86-125)||(22747180-22747219)
chr7 (6-49)||(27050457-27050500)
chr7 (2-49)||(27535538-27535585)
chr7 (86-125)||(36719231-36719270)
chr7 (86-125)||(42603450-42603489)
chr7 (7-49)||(17509198-17509240)
chr7 (7-49)||(17543974-17544016)
chr7 (11-49)||(48304387-48304425)
chr7 (5-50)||(38276928-38276973)
chr7 (5-49)||(2622675-2622719)
chr7 (5-49)||(33476646-33476690)
chr7 (1-49)||(37376025-37376073)
chr7 (2-30)||(37714558-37714586)
chr7 (1-45)||(39532973-39533017)
chr7 (3-31)||(39707371-39707399)
[»] chr6 (25 HSPs)
chr6 (1-49)||(19402802-19402850)
chr6 (2-49)||(23654330-23654377)
chr6 (1-49)||(15590073-15590121)
chr6 (2-49)||(4921875-4921922)
chr6 (2-49)||(31937414-31937461)
chr6 (1-49)||(2304804-2304852)
chr6 (1-49)||(4393849-4393897)
chr6 (1-49)||(6296243-6296291)
chr6 (1-49)||(6303053-6303101)
chr6 (1-49)||(12481364-12481412)
chr6 (5-49)||(31705248-31705292)
chr6 (2-49)||(27135193-27135240)
chr6 (7-49)||(29284837-29284879)
chr6 (1-49)||(14783165-14783213)
chr6 (1-49)||(21507802-21507850)
chr6 (1-45)||(29927092-29927136)
chr6 (86-125)||(5527319-5527358)
chr6 (86-125)||(15589796-15589835)
chr6 (1-39)||(6419862-6419900)
chr6 (2-35)||(20028706-20028739)
chr6 (1-49)||(2488218-2488265)
chr6 (86-126)||(2488533-2488573)
chr6 (86-126)||(8693341-8693381)
chr6 (1-49)||(8693651-8693699)
chr6 (1-49)||(23638112-23638160)
[»] chr3 (42 HSPs)
chr3 (1-49)||(2147806-2147854)
chr3 (1-49)||(35174783-35174831)
chr3 (1-49)||(39429501-39429549)
chr3 (1-46)||(106040-106085)
chr3 (1-49)||(11819162-11819210)
chr3 (1-49)||(31270405-31270453)
chr3 (1-49)||(31462748-31462796)
chr3 (1-49)||(32080756-32080804)
chr3 (1-49)||(36691801-36691849)
chr3 (2-49)||(19861281-19861328)
chr3 (1-49)||(14585541-14585589)
chr3 (1-49)||(22485044-22485092)
chr3 (1-45)||(36624700-36624744)
chr3 (1-49)||(38527342-38527390)
chr3 (1-49)||(40013274-40013322)
chr3 (1-49)||(48652442-48652490)
chr3 (1-49)||(53402700-53402748)
chr3 (1-49)||(55454945-55454993)
chr3 (2-49)||(19645301-19645348)
chr3 (7-49)||(24483680-24483722)
chr3 (1-42)||(40883877-40883918)
chr3 (1-49)||(33637482-33637530)
chr3 (1-49)||(34103719-34103767)
chr3 (1-49)||(39610291-39610339)
chr3 (1-49)||(41868296-41868344)
chr3 (1-49)||(53155432-53155480)
chr3 (1-49)||(54239020-54239068)
chr3 (1-49)||(55090585-55090633)
chr3 (1-40)||(4206522-4206561)
chr3 (1-32)||(48400978-48401009)
chr3 (86-125)||(48401503-48401542)
chr3 (86-125)||(49627783-49627822)
chr3 (1-32)||(49628106-49628137)
chr3 (1-46)||(1074899-1074944)
chr3 (1-46)||(3312522-3312567)
chr3 (1-42)||(3457022-3457063)
chr3 (92-125)||(4019994-4020027)
chr3 (92-125)||(22844448-22844481)
chr3 (1-42)||(24520716-24520757)
chr3 (1-49)||(13701974-13702022)
chr3 (2-42)||(40716270-40716310)
chr3 (2-42)||(50637948-50637988)
[»] chr1 (33 HSPs)
chr1 (1-49)||(12871700-12871748)
chr1 (1-49)||(42490972-42491020)
chr1 (1-49)||(44517226-44517274)
chr1 (1-49)||(424285-424333)
chr1 (1-49)||(3232867-3232915)
chr1 (1-49)||(10627079-10627127)
chr1 (1-49)||(13488530-13488578)
chr1 (1-49)||(15791269-15791317)
chr1 (1-49)||(29205364-29205412)
chr1 (1-49)||(29726590-29726638)
chr1 (1-49)||(33487024-33487072)
chr1 (1-49)||(33939007-33939055)
chr1 (2-42)||(47551177-47551217)
chr1 (1-49)||(51418092-51418140)
chr1 (7-49)||(17347682-17347724)
chr1 (9-49)||(14265371-14265411)
chr1 (1-49)||(15391246-15391294)
chr1 (1-49)||(28678124-28678172)
chr1 (1-49)||(37822339-37822387)
chr1 (1-49)||(45750557-45750605)
chr1 (1-40)||(27534778-27534817)
chr1 (2-49)||(29069836-29069883)
chr1 (7-49)||(33125799-33125841)
chr1 (1-46)||(32784187-32784232)
chr1 (1-46)||(45425469-45425514)
chr1 (1-49)||(4882353-4882401)
chr1 (1-49)||(18343693-18343740)
chr1 (1-49)||(20411652-20411700)
chr1 (1-49)||(25689837-25689885)
chr1 (86-125)||(42491280-42491319)
chr1 (86-140)||(27535108-27535161)
chr1 (1-31)||(50107926-50107956)
chr1 (13-49)||(42276446-42276482)
[»] scaffold0312 (1 HSPs)
scaffold0312 (1-49)||(6216-6264)
[»] scaffold0121 (1 HSPs)
scaffold0121 (1-49)||(13239-13287)
[»] scaffold1350 (1 HSPs)
scaffold1350 (1-49)||(1653-1701)
[»] scaffold0294 (1 HSPs)
scaffold0294 (1-49)||(4061-4109)
[»] scaffold0536 (2 HSPs)
scaffold0536 (1-49)||(2981-3029)
scaffold0536 (86-125)||(3306-3345)
[»] scaffold0321 (1 HSPs)
scaffold0321 (1-49)||(7118-7166)
[»] scaffold0001 (1 HSPs)
scaffold0001 (5-49)||(404252-404296)
[»] scaffold0056 (1 HSPs)
scaffold0056 (1-49)||(74243-74291)


Alignment Details
Target: chr8 (Bit Score: 222; Significance: 1e-122; HSPs: 31)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 30039387 - 30039154
Alignment:
Q  1 ctttcgtttgtttttgtgatttcgtcgtctctgcacgactctgtttgttggcataagtaccttgactttttatatgtgtttattcatttatattgtatcg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  30039387 ctttcgtttgtttttgtgatttcgtcgtctctgcacgactctgtttgttggcataagtaccttgactttttatgtgtgtttattcatttatattgtatcg 30039288  T
Q  101 atgcactctatcaattcgaatgaatattgttatatttttgccaaaaaagggattctctccatttcctttagtttttagttaaataaatgttgtatgtaca 200  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30039287 atgcactctatcaattcaaatgaatattgttatatttttgccaaaaaagggattctctccatttcctttagtttttagttaaataaatgttgtatgtaca 30039188  T
Q  201 catttttaaaattgaaaacattaattgaatattt 234  Q
    |||||||||||| |||||||||||||||||||||    
T  30039187 catttttaaaatcgaaaacattaattgaatattt 30039154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 2234520 - 2234472
Alignment:
Q  1 ctttcgtttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||    
T  2234520 ctttcgtttgtttttgtgatttcgtcgtctctgaacgactctgtttgtt 2234472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 7579905 - 7579857
Alignment:
Q  1 ctttcgtttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||    
T  7579905 ctttcgtttgtttttgtgatttcgtcgtctctgaacgactctgtttgtt 7579857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 24791218 - 24791170
Alignment:
Q  1 ctttcgtttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||    
T  24791218 ctttcgtttgtttttgtgatttcgtcgtctctgaacgactctgtttgtt 24791170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 30026930 - 30026882
Alignment:
Q  1 ctttcgtttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||    
T  30026930 ctttcgtttgtttttgtgatttcgtcgtctctgaacgactctgtttgtt 30026882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 9501669 - 9501714
Alignment:
Q  1 ctttcgtttgtttttgtgatttcgtcgtctctgcacgactctgttt 46  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||    
T  9501669 ctttcgtttgtttttgtgatttcgtcgtctctgaacgactctgttt 9501714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 3204806 - 3204758
Alignment:
Q  1 ctttcgtttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    ||||||||||||| ||||||||||||||||||| |||||||||||||||    
T  3204806 ctttcgtttgtttatgtgatttcgtcgtctctgaacgactctgtttgtt 3204758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 14600748 - 14600700
Alignment:
Q  1 ctttcgtttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    |||||||||||||||||||||||||||||| || |||||||||||||||    
T  14600748 ctttcgtttgtttttgtgatttcgtcgtctttgaacgactctgtttgtt 14600700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 31308227 - 31308275
Alignment:
Q  1 ctttcgtttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    ||||||||||||||||||||||||||||||||  |||||||||||||||    
T  31308227 ctttcgtttgtttttgtgatttcgtcgtctctaaacgactctgtttgtt 31308275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 31407798 - 31407750
Alignment:
Q  1 ctttcgtttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    ||||||||||||||| ||||||||||||||||| |||||||||||||||    
T  31407798 ctttcgtttgtttttatgatttcgtcgtctctgaacgactctgtttgtt 31407750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 37612732 - 37612780
Alignment:
Q  1 ctttcgtttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    ||||||||||||||||||||||||||||||||| |||||||| ||||||    
T  37612732 ctttcgtttgtttttgtgatttcgtcgtctctgaacgactctatttgtt 37612780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 11161961 - 11162003
Alignment:
Q  1 ctttcgtttgtttttgtgatttcgtcgtctctgcacgactctg 43  Q
    ||||||||||||||||||||||||||||||| |||||||||||    
T  11161961 ctttcgtttgtttttgtgatttcgtcgtctccgcacgactctg 11162003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 2968611 - 2968659
Alignment:
Q  1 ctttcgtttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    |||||||||||||||||||||| ||||||||||||| ||| ||||||||    
T  2968611 ctttcgtttgtttttgtgattttgtcgtctctgcacaactttgtttgtt 2968659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 10338872 - 10338824
Alignment:
Q  1 ctttcgtttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    |||||||||||||||||||||||||||||| || |||||| ||||||||    
T  10338872 ctttcgtttgtttttgtgatttcgtcgtctttgaacgactttgtttgtt 10338824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 22787571 - 22787619
Alignment:
Q  1 ctttcgtttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    ||||||||||||||||||||| |||||| |||| |||||||||||||||    
T  22787571 ctttcgtttgtttttgtgattccgtcgtttctgaacgactctgtttgtt 22787619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 39067739 - 39067691
Alignment:
Q  1 ctttcgtttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    |||||||||||||||||||||||||||||| || |||||| ||||||||    
T  39067739 ctttcgtttgtttttgtgatttcgtcgtctttgaacgactatgtttgtt 39067691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 41361811 - 41361859
Alignment:
Q  1 ctttcgtttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    |||||||||||||||||||||| |||||||||  |||||||||||||||    
T  41361811 ctttcgtttgtttttgtgatttggtcgtctctaaacgactctgtttgtt 41361859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 49
Target Start/End: Complemental strand, 2025258 - 2025211
Alignment:
Q  2 tttcgtttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    |||||||| ||||||||||||||||||||||| |||| ||||||||||    
T  2025258 tttcgtttatttttgtgatttcgtcgtctctgaacgattctgtttgtt 2025211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 49
Target Start/End: Original strand, 31202538 - 31202585
Alignment:
Q  2 tttcgtttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    |||||||||||||||||||||||||||||||| || ||||| ||||||    
T  31202538 tttcgtttgtttttgtgatttcgtcgtctctgaacaactctatttgtt 31202585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 7 - 49
Target Start/End: Original strand, 12329712 - 12329754
Alignment:
Q  7 tttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    ||||||||||||||||||||||||||| |||||| ||||||||    
T  12329712 tttgtttttgtgatttcgtcgtctctgaacgactatgtttgtt 12329754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 86 - 140
Target Start/End: Original strand, 24210651 - 24210704
Alignment:
Q  86 atttatattgtatcgatgcactctatcaattcgaatgaatattgttatatttttg 140  Q
    |||| ||||||||||||| |||||||||||| |||||||||||||| ||||||||    
T  24210651 atttttattgtatcgatgtactctatcaatttgaatgaatattgtt-tatttttg 24210704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 7281727 - 7281772
Alignment:
Q  1 ctttcgtttgtttttgtgatttcgtcgtctctgcacgactctgttt 46  Q
    ||||||||||||||||||||||| |||||| |||| ||||||||||    
T  7281727 ctttcgtttgtttttgtgatttcatcgtctttgcatgactctgttt 7281772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 24699911 - 24699959
Alignment:
Q  1 ctttcgtttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    ||||| |||| |||||| ||||||||||||||| |||||||||||||||    
T  24699911 ctttcatttgcttttgtaatttcgtcgtctctgaacgactctgtttgtt 24699959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 37128536 - 37128488
Alignment:
Q  1 ctttcgtttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    ||||||||||||||||| ||||||||||||||  |||||||| ||||||    
T  37128536 ctttcgtttgtttttgtaatttcgtcgtctctcaacgactctatttgtt 37128488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 86 - 125
Target Start/End: Complemental strand, 7579573 - 7579534
Alignment:
Q  86 atttatattgtatcgatgcactctatcaattcgaatgaat 125  Q
    |||||||||||||||||| |||||||||||| ||||||||    
T  7579573 atttatattgtatcgatgtactctatcaatttgaatgaat 7579534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 126
Target Start/End: Original strand, 5526215 - 5526253
Alignment:
Q  88 ttatattgtatcgatgcactctatcaattcgaatgaata 126  Q
    |||||||||||||||| |||||||||||| |||||||||    
T  5526215 ttatattgtatcgatgtactctatcaatttgaatgaata 5526253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 4757244 - 4757292
Alignment:
Q  1 ctttcgtttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    ||||| ||| |||||  |||||||||||||||| |||||||||||||||    
T  4757244 ctttcatttctttttaagatttcgtcgtctctgaacgactctgtttgtt 4757292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 10148026 - 10148074
Alignment:
Q  1 ctttcgtttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    |||||||||||||||| ||||  |||||||||  |||||||||||||||    
T  10148026 ctttcgtttgtttttgagattatgtcgtctctaaacgactctgtttgtt 10148074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 10334254 - 10334298
Alignment:
Q  1 ctttcgtttgtttttgtgatttcgtcgtctctgcacgactctgtt 45  Q
    |||| ||||||||| ||||||||||| ||| ||||||||||||||    
T  10334254 cttttgtttgttttagtgatttcgtcatctttgcacgactctgtt 10334298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 28297156 - 28297124
Alignment:
Q  1 ctttcgtttgtttttgtgatttcgtcgtctctg 33  Q
    ||||||| |||||||||||||||||||||||||    
T  28297156 ctttcgtctgtttttgtgatttcgtcgtctctg 28297124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 126
Target Start/End: Complemental strand, 43936898 - 43936858
Alignment:
Q  86 atttatattgtatcgatgcactctatcaattcgaatgaata 126  Q
    |||| ||||||||||||  ||||||||||||||||||||||    
T  43936898 atttgtattgtatcgatctactctatcaattcgaatgaata 43936858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1379 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: scaffold1379
Description:

Target: scaffold1379; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 1128 - 1080
Alignment:
Q  1 ctttcgtttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  1128 ctttcgtttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 1080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1379; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 54 - 102
Alignment:
Q  1 ctttcgtttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    |||| |||| ||||||||||||||||||||||| |||||||||||||||    
T  54 cttttgtttatttttgtgatttcgtcgtctctgaacgactctgtttgtt 102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 4e-19; HSPs: 31)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 18653861 - 18653909
Alignment:
Q  1 ctttcgtttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  18653861 ctttcgtttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 18653909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 17331407 - 17331455
Alignment:
Q  1 ctttcgtttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||    
T  17331407 ctttcgtttgtttttgtgatttcgtcgtctctgaacgactctgtttgtt 17331455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 28040708 - 28040756
Alignment:
Q  1 ctttcgtttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||    
T  28040708 ctttcgtttgtttttgtgatttcgtcgtctctgaacgactctgtttgtt 28040756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 33164510 - 33164462
Alignment:
Q  1 ctttcgtttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||    
T  33164510 ctttcgtttgtttttgtgatttcgtcgtctctgaacgactctgtttgtt 33164462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 39179870 - 39179822
Alignment:
Q  1 ctttcgtttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||    
T  39179870 ctttcgtttgtttttgtgatttcgtcgtctctgaacgactctgtttgtt 39179822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 12891755 - 12891802
Alignment:
Q  1 ctttcgtttgtttttgtgatttcgtcgtctctgcacgactctgtttgt 48  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||    
T  12891755 ctttcgtttgtttttgtgatttcgttgtctctgcacgactctgtttgt 12891802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 2555392 - 2555344
Alignment:
Q  1 ctttcgtttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    ||||||||||||||| ||||||||||||||||| |||||||||||||||    
T  2555392 ctttcgtttgtttttatgatttcgtcgtctctgaacgactctgtttgtt 2555344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 6281123 - 6281171
Alignment:
Q  1 ctttcgtttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    ||||||||||||||||||||||||||||||||  |||||||||||||||    
T  6281123 ctttcgtttgtttttgtgatttcgtcgtctctagacgactctgtttgtt 6281171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 6635329 - 6635377
Alignment:
Q  1 ctttcgtttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    |||| |||||||||||||||||||||||||||| |||||||||||||||    
T  6635329 ctttagtttgtttttgtgatttcgtcgtctctgaacgactctgtttgtt 6635377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 7771863 - 7771815
Alignment:
Q  1 ctttcgtttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    ||||| ||||||||||||||||||||||||||| |||||||||||||||    
T  7771863 ctttcatttgtttttgtgatttcgtcgtctctgaacgactctgtttgtt 7771815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 17096281 - 17096233
Alignment:
Q  1 ctttcgtttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    |||||||||||||||||||||| |||||||||| |||||||||||||||    
T  17096281 ctttcgtttgtttttgtgattttgtcgtctctgaacgactctgtttgtt 17096233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 178148 - 178098
Alignment:
Q  1 ctttcgtttgtttttgtgatttcgtcgtctct--gcacgactctgtttgtt 49  Q
    ||||||||||||||||||||||||||||||||  |||||||||||||||||    
T  178148 ctttcgtttgtttttgtgatttcgtcgtctctgcgcacgactctgtttgtt 178098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 17687284 - 17687329
Alignment:
Q  1 ctttcgtttgtttttgtgatttcgtcgtctctgcacgactctgttt 46  Q
    |||| |||||||||||||||||||| ||||||||||||||||||||    
T  17687284 cttttgtttgtttttgtgatttcgttgtctctgcacgactctgttt 17687329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 4 - 49
Target Start/End: Complemental strand, 23882155 - 23882110
Alignment:
Q  4 tcgtttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    |||||||||||||||||||||||||||||| ||||| |||||||||    
T  23882155 tcgtttgtttttgtgatttcgtcgtctctgaacgaccctgtttgtt 23882110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 3740436 - 3740484
Alignment:
Q  1 ctttcgtttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    ||||||||||||| ||||||||||||||||||  |||||||||||||||    
T  3740436 ctttcgtttgtttgtgtgatttcgtcgtctctaaacgactctgtttgtt 3740484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 11734861 - 11734813
Alignment:
Q  1 ctttcgtttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    |||| ||||| |||||||||||||||||||||| |||||||||||||||    
T  11734861 ctttagtttgcttttgtgatttcgtcgtctctgaacgactctgtttgtt 11734813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 29097868 - 29097916
Alignment:
Q  1 ctttcgtttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    |||| ||||||||||||||||||||||||| || |||||||||||||||    
T  29097868 ctttagtttgtttttgtgatttcgtcgtctttgaacgactctgtttgtt 29097916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 34431139 - 34431187
Alignment:
Q  1 ctttcgtttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    |||||||||| ||||||||||||||||||| || |||||||||||||||    
T  34431139 ctttcgtttgattttgtgatttcgtcgtctttgaacgactctgtttgtt 34431187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 42396554 - 42396506
Alignment:
Q  1 ctttcgtttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    ||||| ||||||||||||||||||||||||||| |||| ||||||||||    
T  42396554 ctttcatttgtttttgtgatttcgtcgtctctgaacgaatctgtttgtt 42396506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 49
Target Start/End: Complemental strand, 3079346 - 3079299
Alignment:
Q  2 tttcgtttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    ||||||||||||||||||||| |||||||||| |||||| ||||||||    
T  3079346 tttcgtttgtttttgtgattttgtcgtctctgaacgactttgtttgtt 3079299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 45
Target Start/End: Complemental strand, 32347755 - 32347712
Alignment:
Q  2 tttcgtttgtttttgtgatttcgtcgtctctgcacgactctgtt 45  Q
    ||||||||||||||||||||||||||| |||| |||||||||||    
T  32347755 tttcgtttgtttttgtgatttcgtcgtttctgaacgactctgtt 32347712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 35276030 - 35275989
Alignment:
Q  1 ctttcgtttgtttttgtgatttcgtcgtctctgcacgactct 42  Q
    |||||||||||||||||||||| ||||||| |||||||||||    
T  35276030 ctttcgtttgtttttgtgattttgtcgtctttgcacgactct 35275989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 6681918 - 6681870
Alignment:
Q  1 ctttcgtttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    ||||||||||||||||| ||||||| |||||| |||| |||||||||||    
T  6681918 ctttcgtttgtttttgtaatttcgttgtctctacacggctctgtttgtt 6681870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 12439676 - 12439628
Alignment:
Q  1 ctttcgtttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    |||||||||||||||||||||||||||| | || | |||||||||||||    
T  12439676 ctttcgtttgtttttgtgatttcgtcgtttttgaatgactctgtttgtt 12439628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 17699632 - 17699664
Alignment:
Q  1 ctttcgtttgtttttgtgatttcgtcgtctctg 33  Q
    |||||||||||||||||||||||||||||||||    
T  17699632 ctttcgtttgtttttgtgatttcgtcgtctctg 17699664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 32309242 - 32309290
Alignment:
Q  1 ctttcgtttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    ||||| ||||||||||| |||||||||||| |||||||||| |||||||    
T  32309242 ctttcttttgtttttgtaatttcgtcgtctttgcacgactcagtttgtt 32309290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 49
Target Start/End: Original strand, 585888 - 585935
Alignment:
Q  2 tttcgtttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    ||||||||||||||||||||||||||||| ||||  ||| ||||||||    
T  585888 tttcgtttgtttttgtgatttcgtcgtctttgcatcactttgtttgtt 585935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 86 - 125
Target Start/End: Original strand, 6635659 - 6635698
Alignment:
Q  86 atttatattgtatcgatgcactctatcaattcgaatgaat 125  Q
    |||||||||||||||||| |||||||||||| ||||||||    
T  6635659 atttatattgtatcgatgtactctatcaatttgaatgaat 6635698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 49
Target Start/End: Original strand, 20483270 - 20483313
Alignment:
Q  6 gtttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    ||||||||||||||||||||||||| || || ||||||||||||    
T  20483270 gtttgtttttgtgatttcgtcgtctttgaacaactctgtttgtt 20483313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 12215214 - 12215260
Alignment:
Q  1 ctttcgtttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    |||||||||| || |||||||||||||||||  ||||||||||||||||    
T  12215214 ctttcgtttgcttatgtgatttcgtcgtctc--cacgactctgtttgtt 12215260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 126
Target Start/End: Original strand, 42781412 - 42781452
Alignment:
Q  86 atttatattgtatcgatgcactctatcaattcgaatgaata 126  Q
    |||| |||||||||||||||||||||||||| |||| ||||    
T  42781412 atttgtattgtatcgatgcactctatcaatttgaataaata 42781452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 4e-19; HSPs: 50)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 5814426 - 5814474
Alignment:
Q  1 ctttcgtttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  5814426 ctttcgtttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 5814474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 7083858 - 7083810
Alignment:
Q  1 ctttcgtttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||    
T  7083858 ctttcgtttgtttttgtgatttcgtcgtctctgaacgactctgtttgtt 7083810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 11210355 - 11210307
Alignment:
Q  1 ctttcgtttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||    
T  11210355 ctttcgtttgtttttgtgatttcgtcgtctctgaacgactctgtttgtt 11210307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 20887798 - 20887750
Alignment:
Q  1 ctttcgtttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||    
T  20887798 ctttcgtttgtttttgtgatttcgtcgtctctgaacgactctgtttgtt 20887750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 24825728 - 24825776
Alignment:
Q  1 ctttcgtttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||    
T  24825728 ctttcgtttgtttttgtgatttcgtcgtctttgcacgactctgtttgtt 24825776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 30202117 - 30202165
Alignment:
Q  1 ctttcgtttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||    
T  30202117 ctttcgtttgtttttgtgatttcgtcgtctctgaacgactctgtttgtt 30202165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 38944190 - 38944142
Alignment:
Q  1 ctttcgtttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||    
T  38944190 ctttcgtttgtttttgtgatttcgtcgtctctgaacgactctgtttgtt 38944142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 2 - 49
Target Start/End: Original strand, 28837145 - 28837192
Alignment:
Q  2 tttcgtttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||    
T  28837145 tttcgtttgtttttgtgatttcgtcgtctctgcacgacgctgtttgtt 28837192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 13965639 - 13965687
Alignment:
Q  1 ctttcgtttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    ||||||||||||||||||||||||||||||||| ||||||||| |||||    
T  13965639 ctttcgtttgtttttgtgatttcgtcgtctctgaacgactctgattgtt 13965687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 29268819 - 29268771
Alignment:
Q  1 ctttcgtttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    ||||||||||||||||||||||||||||||||| || ||||||||||||    
T  29268819 ctttcgtttgtttttgtgatttcgtcgtctctgaacaactctgtttgtt 29268771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 43244423 - 43244375
Alignment:
Q  1 ctttcgtttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    |||||||||||||||||||||| |||||||||| |||||||||||||||    
T  43244423 ctttcgtttgtttttgtgattttgtcgtctctgaacgactctgtttgtt 43244375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 50801296 - 50801344
Alignment:
Q  1 ctttcgtttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    ||||||||| ||||||||||||||||||||||| |||||||||||||||    
T  50801296 ctttcgtttatttttgtgatttcgtcgtctctgaacgactctgtttgtt 50801344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 2 - 49
Target Start/End: Complemental strand, 13586281 - 13586234
Alignment:
Q  2 tttcgtttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    ||||||||||||||||||||||||| |||||| |||||||||||||||    
T  13586281 tttcgtttgtttttgtgatttcgtcatctctgaacgactctgtttgtt 13586234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 2 - 49
Target Start/End: Original strand, 22757174 - 22757221
Alignment:
Q  2 tttcgtttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    ||||||||||||||||||||||||||||| || |||||||||||||||    
T  22757174 tttcgtttgtttttgtgatttcgtcgtctatgaacgactctgtttgtt 22757221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 2 - 49
Target Start/End: Complemental strand, 45351111 - 45351064
Alignment:
Q  2 tttcgtttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    |||||||||||||||||||||||||||||||| || ||||||||||||    
T  45351111 tttcgtttgtttttgtgatttcgtcgtctctgaacaactctgtttgtt 45351064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 2 - 49
Target Start/End: Complemental strand, 45360590 - 45360543
Alignment:
Q  2 tttcgtttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    |||||||||||||||||||||||||||||||| || ||||||||||||    
T  45360590 tttcgtttgtttttgtgatttcgtcgtctctgaacaactctgtttgtt 45360543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 7060403 - 7060448
Alignment:
Q  1 ctttcgtttgtttttgtgatttcgtcgtctctgcacgactctgttt 46  Q
    |||||||||||||||||||||||||||||| || ||||||||||||    
T  7060403 ctttcgtttgtttttgtgatttcgtcgtctttgaacgactctgttt 7060448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 36124391 - 36124346
Alignment:
Q  1 ctttcgtttgtttttgtgatttcgtcgtctctgcacgactctgttt 46  Q
    ||||||||||||||||||||||||||||||||| ||||||| ||||    
T  36124391 ctttcgtttgtttttgtgatttcgtcgtctctgaacgactcagttt 36124346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 394316 - 394268
Alignment:
Q  1 ctttcgtttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    ||||||||||||| | ||||||||||||||||| |||||||||||||||    
T  394316 ctttcgtttgtttctatgatttcgtcgtctctgaacgactctgtttgtt 394268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 6882035 - 6882083
Alignment:
Q  1 ctttcgtttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    ||||||||||||||||||||||||||||||||| ||  |||||||||||    
T  6882035 ctttcgtttgtttttgtgatttcgtcgtctctgaacatctctgtttgtt 6882083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 6911759 - 6911807
Alignment:
Q  1 ctttcgtttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    ||||||||||||||||||||||| ||||||||  |||||||||||||||    
T  6911759 ctttcgtttgtttttgtgatttcttcgtctctaaacgactctgtttgtt 6911807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 8517498 - 8517450
Alignment:
Q  1 ctttcgtttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    |||||||||||||||||||||||| |||||||| |||||| ||||||||    
T  8517498 ctttcgtttgtttttgtgatttcgccgtctctgaacgactttgtttgtt 8517450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 8712609 - 8712657
Alignment:
Q  1 ctttcgtttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    |||||||||||||||||||||||||| |||||| | |||||||||||||    
T  8712609 ctttcgtttgtttttgtgatttcgtcatctctgaatgactctgtttgtt 8712657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 12717159 - 12717111
Alignment:
Q  1 ctttcgtttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    ||||||||||||||||||||||| ||||||| |||||||||| ||||||    
T  12717159 ctttcgtttgtttttgtgatttcttcgtctcagcacgactctatttgtt 12717111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 25658246 - 25658294
Alignment:
Q  1 ctttcgtttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    ||||||| ||||||||||||||||||||||||| |||||| ||||||||    
T  25658246 ctttcgtatgtttttgtgatttcgtcgtctctgaacgactttgtttgtt 25658294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 26674451 - 26674499
Alignment:
Q  1 ctttcgtttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    |||||||||||||||||||||||||| |||||| |||||| ||||||||    
T  26674451 ctttcgtttgtttttgtgatttcgtcatctctgaacgactttgtttgtt 26674499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 27394909 - 27394957
Alignment:
Q  1 ctttcgtttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    ||||||||||||||||||||||||||||||||| |||||| || |||||    
T  27394909 ctttcgtttgtttttgtgatttcgtcgtctctgaacgactttgattgtt 27394957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 29922916 - 29922964
Alignment:
Q  1 ctttcgtttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    ||||||| |||||||||||||| |||||||||| |||||||||||||||    
T  29922916 ctttcgtctgtttttgtgattttgtcgtctctgaacgactctgtttgtt 29922964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 43493329 - 43493281
Alignment:
Q  1 ctttcgtttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    |||| |||| ||||||||||||||||||||||| |||||||||||||||    
T  43493329 cttttgtttatttttgtgatttcgtcgtctctgaacgactctgtttgtt 43493281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 44757084 - 44757036
Alignment:
Q  1 ctttcgtttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    ||||||||||||||| ||||||||||||||||||| |||| ||||||||    
T  44757084 ctttcgtttgtttttatgatttcgtcgtctctgcatgactttgtttgtt 44757036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 49
Target Start/End: Complemental strand, 24568754 - 24568707
Alignment:
Q  2 tttcgtttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    ||||||||||||||||||||||||||| |||| ||||||| |||||||    
T  24568754 tttcgtttgtttttgtgatttcgtcgtatctgaacgactccgtttgtt 24568707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 49
Target Start/End: Complemental strand, 24611840 - 24611793
Alignment:
Q  2 tttcgtttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    ||||||||| ||||||||||||| |||||||| |||||||||||||||    
T  24611840 tttcgtttgcttttgtgatttcgacgtctctgaacgactctgtttgtt 24611793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 49
Target Start/End: Original strand, 42197634 - 42197681
Alignment:
Q  2 tttcgtttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    |||| ||||||||||||||||||||||||||| | |||||||||||||    
T  42197634 tttcatttgtttttgtgatttcgtcgtctctgaatgactctgtttgtt 42197681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 19745468 - 19745517
Alignment:
Q  1 ctttcgtttgtttt-tgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    |||||||||||||| |||||||| |||||||||| |||||||||||||||    
T  19745468 ctttcgtttgttttttgtgatttagtcgtctctgaacgactctgtttgtt 19745517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 19794338 - 19794289
Alignment:
Q  1 ctttcgtttgttttt-gtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    ||||||||||||||| ||||||| |||||||||| |||||||||||||||    
T  19794338 ctttcgtttgttttttgtgatttagtcgtctctgaacgactctgtttgtt 19794289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 20399945 - 20399904
Alignment:
Q  1 ctttcgtttgtttttgtgatttcgtcgtctctgcacgactct 42  Q
    ||||||||| ||||||||||||||||||||||| ||||||||    
T  20399945 ctttcgtttatttttgtgatttcgtcgtctctgaacgactct 20399904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 478054 - 478006
Alignment:
Q  1 ctttcgtttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    ||||||||| |||||||||||||||  |||||| |||||||||||||||    
T  478054 ctttcgtttatttttgtgatttcgttttctctgaacgactctgtttgtt 478006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 626591 - 626543
Alignment:
Q  1 ctttcgtttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    |||||||||||||||||||||||||| ||| || ||||||||| |||||    
T  626591 ctttcgtttgtttttgtgatttcgtcctctgtgaacgactctgattgtt 626543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 42
Target Start/End: Complemental strand, 7861247 - 7861207
Alignment:
Q  2 tttcgtttgtttttgtgatttcgtcgtctctgcacgactct 42  Q
    |||| ||||||||||||||||||||||||||| ||||||||    
T  7861247 tttcatttgtttttgtgatttcgtcgtctctgaacgactct 7861207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 24100220 - 24100268
Alignment:
Q  1 ctttcgtttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    ||||||||||||||||  |||||||||||| || |||||||||||||||    
T  24100220 ctttcgtttgtttttgcaatttcgtcgtctgtgaacgactctgtttgtt 24100268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 49
Target Start/End: Original strand, 2447884 - 2447927
Alignment:
Q  6 gtttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    |||||||||||||||||| |||||| || |||||||||||||||    
T  2447884 gtttgtttttgtgatttcttcgtctttgaacgactctgtttgtt 2447927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 86 - 125
Target Start/End: Complemental strand, 55600256 - 55600217
Alignment:
Q  86 atttatattgtatcgatgcactctatcaattcgaatgaat 125  Q
    |||| |||||||||||||||||||||||||| ||||||||    
T  55600256 atttgtattgtatcgatgcactctatcaatttgaatgaat 55600217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 126
Target Start/End: Original strand, 8712919 - 8712959
Alignment:
Q  86 atttatattgtatcgatgcactctatcaattcgaatgaata 126  Q
    |||| ||||||||||||| |||||||||||| |||||||||    
T  8712919 atttgtattgtatcgatgtactctatcaatttgaatgaata 8712959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 30
Target Start/End: Original strand, 22621513 - 22621541
Alignment:
Q  2 tttcgtttgtttttgtgatttcgtcgtct 30  Q
    |||||||||||||||||||||||||||||    
T  22621513 tttcgtttgtttttgtgatttcgtcgtct 22621541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 26742505 - 26742457
Alignment:
Q  1 ctttcgtttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    |||||||||||||| ||||||| ||||||| || |||||||||| ||||    
T  26742505 ctttcgtttgttttcgtgattttgtcgtctttgaacgactctgtatgtt 26742457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 27090804 - 27090851
Alignment:
Q  1 ctttcgtttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    |||||||||||||| || ||||||| |||||||||||||| ||||||||    
T  27090804 ctttcgtttgtttt-gtaatttcgttgtctctgcacgactatgtttgtt 27090851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 126
Target Start/End: Original strand, 27091119 - 27091159
Alignment:
Q  86 atttatattgtatcgatgcactctatcaattcgaatgaata 126  Q
    |||| ||||||||||||| |||||||||||| |||||||||    
T  27091119 atttgtattgtatcgatgtactctatcaatttgaatgaata 27091159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #48
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 42
Target Start/End: Complemental strand, 35946032 - 35945992
Alignment:
Q  2 tttcgtttgtttttgtgatttcgtcgtctctgcacgactct 42  Q
    |||||||||||||||||||||||| |||| || ||||||||    
T  35946032 tttcgtttgtttttgtgatttcgttgtctttgtacgactct 35945992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #49
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 39837674 - 39837722
Alignment:
Q  1 ctttcgtttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    ||||||||||||||| |||||||||| ||| || |||||| ||||||||    
T  39837674 ctttcgtttgtttttttgatttcgtcatctttgaacgactttgtttgtt 39837722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #50
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 51152204 - 51152251
Alignment:
Q  1 ctttcgtttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    |||||||||||||| ||||||||||| |||||| ||||||| |||||||    
T  51152204 ctttcgtttgtttt-gtgatttcgtcatctctgaacgactccgtttgtt 51152251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 4e-19; HSPs: 35)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 27095784 - 27095832
Alignment:
Q  1 ctttcgtttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  27095784 ctttcgtttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 27095832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 9978711 - 9978663
Alignment:
Q  1 ctttcgtttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||    
T  9978711 ctttcgtttgtttttgtgatttcgtcgtctctgaacgactctgtttgtt 9978663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 15919952 - 15920000
Alignment:
Q  1 ctttcgtttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||    
T  15919952 ctttcgtttgtttttgtgatttcgtcatctctgcacgactctgtttgtt 15920000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 20561174 - 20561126
Alignment:
Q  1 ctttcgtttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||    
T  20561174 ctttcgtttgtttttgtgatttcgtcgtctctgaacgactctgtttgtt 20561126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 38535347 - 38535302
Alignment:
Q  1 ctttcgtttgtttttgtgatttcgtcgtctctgcacgactctgttt 46  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||    
T  38535347 ctttcgtttgtttttgtgatttcgtcgtctctgaacgactctgttt 38535302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 7072990 - 7072942
Alignment:
Q  1 ctttcgtttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    ||||||||||||||||||||||| ||||||||| |||||||||||||||    
T  7072990 ctttcgtttgtttttgtgatttcatcgtctctgaacgactctgtttgtt 7072942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 12891161 - 12891113
Alignment:
Q  1 ctttcgtttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    ||||||||||||||||||||||||||||||| | |||||||||||||||    
T  12891161 ctttcgtttgtttttgtgatttcgtcgtctcggaacgactctgtttgtt 12891113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 25067931 - 25067979
Alignment:
Q  1 ctttcgtttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    ||||||||| ||||||||||||||||||||||| |||||||||||||||    
T  25067931 ctttcgtttctttttgtgatttcgtcgtctctgaacgactctgtttgtt 25067979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 36868087 - 36868135
Alignment:
Q  1 ctttcgtttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    |||||||||||||||| |||||||||||||||| |||||||||||||||    
T  36868087 ctttcgtttgtttttgcgatttcgtcgtctctgaacgactctgtttgtt 36868135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 2 - 49
Target Start/End: Original strand, 33012157 - 33012204
Alignment:
Q  2 tttcgtttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    |||||||||||||||||||||||||||||||| || ||||||||||||    
T  33012157 tttcgtttgtttttgtgatttcgtcgtctctgaacaactctgtttgtt 33012204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 28261930 - 28261885
Alignment:
Q  1 ctttcgtttgtttttgtgatttcgtcgtctctgcacgactctgttt 46  Q
    ||||||||||||||||||||||| ||||||||| ||||||||||||    
T  28261930 ctttcgtttgtttttgtgatttcttcgtctctgaacgactctgttt 28261885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 4604349 - 4604301
Alignment:
Q  1 ctttcgtttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    |||||| |||||||||||||||||||||||||| | |||||||||||||    
T  4604349 ctttcgattgtttttgtgatttcgtcgtctctgaatgactctgtttgtt 4604301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 5 - 49
Target Start/End: Original strand, 4739412 - 4739456
Alignment:
Q  5 cgtttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    ||||||||||||||||||||||||||||| | |||||||||||||    
T  4739412 cgtttgtttttgtgatttcgtcgtctctgaatgactctgtttgtt 4739456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 5754367 - 5754415
Alignment:
Q  1 ctttcgtttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    ||||| |||||||||||||||||||||||| || |||||||||||||||    
T  5754367 ctttcatttgtttttgtgatttcgtcgtctatgaacgactctgtttgtt 5754415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 10287048 - 10287000
Alignment:
Q  1 ctttcgtttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    |||||||||||||||||||||||||||||| || |||||| ||||||||    
T  10287048 ctttcgtttgtttttgtgatttcgtcgtctttgaacgactttgtttgtt 10287000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 12704766 - 12704814
Alignment:
Q  1 ctttcgtttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    |||||||||||||||||||||| |||||||||| |||||| ||||||||    
T  12704766 ctttcgtttgtttttgtgattttgtcgtctctgaacgactttgtttgtt 12704814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 22597214 - 22597262
Alignment:
Q  1 ctttcgtttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    ||||||||||||||| |||||| |||||||||| |||||||||||||||    
T  22597214 ctttcgtttgtttttatgattttgtcgtctctgaacgactctgtttgtt 22597262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 35333584 - 35333632
Alignment:
Q  1 ctttcgtttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    ||||||||| |||||||||||||||||| |||| |||||||||||||||    
T  35333584 ctttcgtttatttttgtgatttcgtcgtttctgaacgactctgtttgtt 35333632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 41797673 - 41797721
Alignment:
Q  1 ctttcgtttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    ||||||||||||||||||||||||||||||  | |||||||||||||||    
T  41797673 ctttcgtttgtttttgtgatttcgtcgtcttagaacgactctgtttgtt 41797721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 43474170 - 43474122
Alignment:
Q  1 ctttcgtttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    ||||||||||||||||||||||||||||||||| | |||||| ||||||    
T  43474170 ctttcgtttgtttttgtgatttcgtcgtctctgaatgactctatttgtt 43474122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 49
Target Start/End: Original strand, 4732150 - 4732197
Alignment:
Q  2 tttcgtttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    |||||||||||||||||||||| ||||||||| |||| ||||||||||    
T  4732150 tttcgtttgtttttgtgatttcatcgtctctgaacgaatctgtttgtt 4732197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 11 - 49
Target Start/End: Original strand, 29542881 - 29542919
Alignment:
Q  11 tttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    ||||||||||||||||||||||| |||||||||||||||    
T  29542881 tttttgtgatttcgtcgtctctgaacgactctgtttgtt 29542919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 12 - 49
Target Start/End: Complemental strand, 34963107 - 34963070
Alignment:
Q  12 ttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    |||||||||||||||||||||| |||||||||||||||    
T  34963107 ttttgtgatttcgtcgtctctgaacgactctgtttgtt 34963070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 13740702 - 13740654
Alignment:
Q  1 ctttcgtttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    |||||||||||||||||||||||||| |||| | |||||| ||||||||    
T  13740702 ctttcgtttgtttttgtgatttcgtcatctccgaacgactttgtttgtt 13740654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 13879048 - 13879001
Alignment:
Q  1 ctttcgtttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    ||||||||| |||||||||||| |||||||||| |||||||||||||||    
T  13879048 ctttcgtttatttttgtgattt-gtcgtctctgaacgactctgtttgtt 13879001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 14019173 - 14019126
Alignment:
Q  1 ctttcgtttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    ||||||||| |||||||||||| |||||||||| |||||||||||||||    
T  14019173 ctttcgtttatttttgtgattt-gtcgtctctgaacgactctgtttgtt 14019126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 28231139 - 28231091
Alignment:
Q  1 ctttcgtttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    ||||||||||||||||||||| | ||||||||| || ||||||||||||    
T  28231139 ctttcgtttgtttttgtgattccatcgtctctgaacaactctgtttgtt 28231091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 31908858 - 31908810
Alignment:
Q  1 ctttcgtttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    ||||||||||||||| |||||||||||||| || |||||| ||||||||    
T  31908858 ctttcgtttgtttttctgatttcgtcgtctttgaacgactttgtttgtt 31908810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 49
Target Start/End: Complemental strand, 17926326 - 17926283
Alignment:
Q  6 gtttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    |||||||||||||||||||| |||| ||||||||| ||||||||    
T  17926326 gtttgtttttgtgatttcgtagtctttgcacgactttgtttgtt 17926283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 86 - 125
Target Start/End: Complemental strand, 34416473 - 34416434
Alignment:
Q  86 atttatattgtatcgatgcactctatcaattcgaatgaat 125  Q
    |||| ||||||||||||| |||||||||||||||||||||    
T  34416473 atttgtattgtatcgatgtactctatcaattcgaatgaat 34416434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 44942364 - 44942411
Alignment:
Q  1 ctttcgtttgtttttgtgatttcgtcgtctctgcacgactctgtttgt 48  Q
    |||| ||||||||||||||||||||||||| || || |||||||||||    
T  44942364 cttttgtttgtttttgtgatttcgtcgtctttgaactactctgtttgt 44942411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 49
Target Start/End: Complemental strand, 17268157 - 17268120
Alignment:
Q  12 ttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    |||||||||||||||||||||| |||||| ||||||||    
T  17268157 ttttgtgatttcgtcgtctctgaacgactttgtttgtt 17268120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 32314521 - 32314569
Alignment:
Q  1 ctttcgtttgtttttgtgatttcgtcgtctctgcacg-actctgtttgtt 49  Q
    |||||||||||||||||||||| |||||||||| ||| ||||||||||||    
T  32314521 ctttcgtttgtttttgtgattttgtcgtctctg-acgaactctgtttgtt 32314569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 11937900 - 11937852
Alignment:
Q  1 ctttcgtttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    ||||||||  ||||||| ||||| ||||||||| |||||||||||||||    
T  11937900 ctttcgttgatttttgtaatttcttcgtctctgaacgactctgtttgtt 11937852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 34471045 - 34471093
Alignment:
Q  1 ctttcgtttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    ||||||||||||||||| || || |||||| || |||||||||||||||    
T  34471045 ctttcgtttgtttttgtaatgtcttcgtctttgaacgactctgtttgtt 34471093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 9e-17; HSPs: 50)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 1281179 - 1281131
Alignment:
Q  1 ctttcgtttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||    
T  1281179 ctttcgtttgtttttgtgatttcgtcgtctctgaacgactctgtttgtt 1281131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 36719594 - 36719546
Alignment:
Q  1 ctttcgtttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||    
T  36719594 ctttcgtttgtttttgtgatttcgtcgtctctgaacgactctgtttgtt 36719546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 14657863 - 14657818
Alignment:
Q  1 ctttcgtttgtttttgtgatttcgtcgtctctgcacgactctgttt 46  Q
    |||| |||||||||||||||||||||||||||||||||||||||||    
T  14657863 cttttgtttgtttttgtgatttcgtcgtctctgcacgactctgttt 14657818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 24320265 - 24320217
Alignment:
Q  1 ctttcgtttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    |||| |||||||||||||||||| |||||||||||||||||||||||||    
T  24320265 cttttgtttgtttttgtgatttcatcgtctctgcacgactctgtttgtt 24320217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 26161059 - 26161107
Alignment:
Q  1 ctttcgtttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    ||||||||||||||||||||||| ||||||||| |||||||||||||||    
T  26161059 ctttcgtttgtttttgtgatttcatcgtctctgaacgactctgtttgtt 26161107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 28664954 - 28664906
Alignment:
Q  1 ctttcgtttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    |||||||||||||||||||||| |||||||||| |||||||||||||||    
T  28664954 ctttcgtttgtttttgtgattttgtcgtctctgaacgactctgtttgtt 28664906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 46026071 - 46026023
Alignment:
Q  1 ctttcgtttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    ||||||||||||||||| ||||||||||||||| |||||||||||||||    
T  46026071 ctttcgtttgtttttgttatttcgtcgtctctgaacgactctgtttgtt 46026023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 2 - 49
Target Start/End: Complemental strand, 9720014 - 9719967
Alignment:
Q  2 tttcgtttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    ||||||||||||||||||||||||| |||||| |||||||||||||||    
T  9720014 tttcgtttgtttttgtgatttcgtcatctctgaacgactctgtttgtt 9719967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 2 - 49
Target Start/End: Original strand, 45482144 - 45482191
Alignment:
Q  2 tttcgtttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    |||||||||||||| ||||||||||||||||| |||||||||||||||    
T  45482144 tttcgtttgtttttatgatttcgtcgtctctgaacgactctgtttgtt 45482191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 3266467 - 3266515
Alignment:
Q  1 ctttcgtttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    ||||||||| |||||||||||| |||||||||| |||||||||||||||    
T  3266467 ctttcgtttatttttgtgattttgtcgtctctgaacgactctgtttgtt 3266515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 4621409 - 4621361
Alignment:
Q  1 ctttcgtttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    ||||||||||||||||||||| | || ||||||||||||||||||||||    
T  4621409 ctttcgtttgtttttgtgattccatcatctctgcacgactctgtttgtt 4621361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 9137037 - 9137085
Alignment:
Q  1 ctttcgtttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    ||||||||| ||||||||||| |||||||||||||||| ||||||||||    
T  9137037 ctttcgtttctttttgtgattccgtcgtctctgcacgattctgtttgtt 9137085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 10094520 - 10094568
Alignment:
Q  1 ctttcgtttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    |||||||||||||||||||||||||||||| || |||||| ||||||||    
T  10094520 ctttcgtttgtttttgtgatttcgtcgtctttgaacgactttgtttgtt 10094568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 10574460 - 10574508
Alignment:
Q  1 ctttcgtttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    |||||||||||||||||||||||||||||| || |||||| ||||||||    
T  10574460 ctttcgtttgtttttgtgatttcgtcgtctttgaacgactttgtttgtt 10574508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 11833098 - 11833146
Alignment:
Q  1 ctttcgtttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    ||||||||||||||||||||||||||||||||| || || |||||||||    
T  11833098 ctttcgtttgtttttgtgatttcgtcgtctctgtacaaccctgtttgtt 11833146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 15017418 - 15017370
Alignment:
Q  1 ctttcgtttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    |||| |||||||||||||||||||| ||||||| |||||||||||||||    
T  15017418 cttttgtttgtttttgtgatttcgttgtctctgaacgactctgtttgtt 15017370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 15674654 - 15674606
Alignment:
Q  1 ctttcgtttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    |||||||||||||||||||||||||| |||||| ||||| |||||||||    
T  15674654 ctttcgtttgtttttgtgatttcgtcatctctgaacgaccctgtttgtt 15674606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 21954860 - 21954812
Alignment:
Q  1 ctttcgtttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    ||||||| |||||||||||||||||||||||||||||| | ||||||||    
T  21954860 ctttcgtctgtttttgtgatttcgtcgtctctgcacgattgtgtttgtt 21954812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 21990741 - 21990789
Alignment:
Q  1 ctttcgtttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    |||||||||||||||||||||||||||| |||| |||||||| ||||||    
T  21990741 ctttcgtttgtttttgtgatttcgtcgtttctgaacgactctttttgtt 21990789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 36579354 - 36579306
Alignment:
Q  1 ctttcgtttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    |||| |||||||||||||||||||||||||||| |||||||| ||||||    
T  36579354 cttttgtttgtttttgtgatttcgtcgtctctgaacgactctatttgtt 36579306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 42603811 - 42603763
Alignment:
Q  1 ctttcgtttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    |||||||||||||||||||||||||||||| |  |||||||||||||||    
T  42603811 ctttcgtttgtttttgtgatttcgtcgtctataaacgactctgtttgtt 42603763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 46
Target Start/End: Original strand, 43847151 - 43847194
Alignment:
Q  3 ttcgtttgtttttgtgatttcgtcgtctctgcacgactctgttt 46  Q
    |||||||||||| |||||||||||||||||| ||||||||||||    
T  43847151 ttcgtttgttttggtgatttcgtcgtctctgaacgactctgttt 43847194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 11 - 49
Target Start/End: Original strand, 36253019 - 36253057
Alignment:
Q  11 tttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    ||||||||||||||||||||||| |||||||||||||||    
T  36253019 tttttgtgatttcgtcgtctctgaacgactctgtttgtt 36253057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 6 - 48
Target Start/End: Complemental strand, 43998982 - 43998940
Alignment:
Q  6 gtttgtttttgtgatttcgtcgtctctgcacgactctgtttgt 48  Q
    ||||||||||||||||||||||||| ||||||||||| |||||    
T  43998982 gtttgtttttgtgatttcgtcgtctttgcacgactctttttgt 43998940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 5684444 - 5684492
Alignment:
Q  1 ctttcgtttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    |||||||||| |||||||||||||| ||||||| |||| ||||||||||    
T  5684444 ctttcgtttgcttttgtgatttcgttgtctctgaacgattctgtttgtt 5684492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 5709494 - 5709542
Alignment:
Q  1 ctttcgtttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    |||||||||| |||||||||||||| ||||||| |||| ||||||||||    
T  5709494 ctttcgtttgcttttgtgatttcgttgtctctgaacgattctgtttgtt 5709542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 9785396 - 9785444
Alignment:
Q  1 ctttcgtttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    |||| |||| ||||||||||||||||||||||| |||||||| ||||||    
T  9785396 cttttgtttatttttgtgatttcgtcgtctctgaacgactctatttgtt 9785444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 17473765 - 17473717
Alignment:
Q  1 ctttcgtttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    ||||| |||||||||||||||| |||||||||| | |||||||||||||    
T  17473765 ctttcatttgtttttgtgattttgtcgtctctgaatgactctgtttgtt 17473717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 17579449 - 17579497
Alignment:
Q  1 ctttcgtttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    ||||| |||||||||||||||| |||||||||| | |||||||||||||    
T  17579449 ctttcatttgtttttgtgattttgtcgtctctgaatgactctgtttgtt 17579497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 22747550 - 22747502
Alignment:
Q  1 ctttcgtttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    ||||| ||| |||||||||||||| ||||||||||||||||| ||||||    
T  22747550 ctttcatttatttttgtgatttcgccgtctctgcacgactctttttgtt 22747502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 32643091 - 32643139
Alignment:
Q  1 ctttcgtttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    |||| |||||||||||||||||||||||||||| | ||||||| |||||    
T  32643091 cttttgtttgtttttgtgatttcgtcgtctctgaaagactctgattgtt 32643139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 32740832 - 32740880
Alignment:
Q  1 ctttcgtttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    ||||||||  ||||||||||||||||||||| | |||||||||||||||    
T  32740832 ctttcgttgatttttgtgatttcgtcgtctcagaacgactctgtttgtt 32740880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 41288037 - 41288085
Alignment:
Q  1 ctttcgtttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    |||||||||||||| ||||||| |||||||||| ||||| |||||||||    
T  41288037 ctttcgtttgttttagtgattttgtcgtctctgaacgacactgtttgtt 41288085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 45457598 - 45457550
Alignment:
Q  1 ctttcgtttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    |||||||||||||| |||||||| ||||||||| |||||| ||||||||    
T  45457598 ctttcgtttgttttcgtgatttcatcgtctctgaacgactttgtttgtt 45457550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 49
Target Start/End: Original strand, 6667479 - 6667522
Alignment:
Q  6 gtttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    |||||||| ||||||||||||||||||| || ||||||||||||    
T  6667479 gtttgtttctgtgatttcgtcgtctctgaacaactctgtttgtt 6667522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 86 - 125
Target Start/End: Complemental strand, 22747219 - 22747180
Alignment:
Q  86 atttatattgtatcgatgcactctatcaattcgaatgaat 125  Q
    |||||||||||||||||| |||||||||||| ||||||||    
T  22747219 atttatattgtatcgatgtactctatcaatttgaatgaat 22747180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 49
Target Start/End: Complemental strand, 27050500 - 27050457
Alignment:
Q  6 gtttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    ||||||||||||||||| ||||||| |||| |||||||||||||    
T  27050500 gtttgtttttgtgattttgtcgtctttgcatgactctgtttgtt 27050457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 49
Target Start/End: Original strand, 27535538 - 27535585
Alignment:
Q  2 tttcgtttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    |||| |||||||||||||||| |||||||||  |||||||||||||||    
T  27535538 tttcatttgtttttgtgattttgtcgtctctaaacgactctgtttgtt 27535585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 86 - 125
Target Start/End: Complemental strand, 36719270 - 36719231
Alignment:
Q  86 atttatattgtatcgatgcactctatcaattcgaatgaat 125  Q
    |||| |||||||||||||||||||||||||| ||||||||    
T  36719270 atttgtattgtatcgatgcactctatcaatttgaatgaat 36719231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 86 - 125
Target Start/End: Complemental strand, 42603489 - 42603450
Alignment:
Q  86 atttatattgtatcgatgcactctatcaattcgaatgaat 125  Q
    |||||||||||||||||| |||||||||||| ||||||||    
T  42603489 atttatattgtatcgatgtactctatcaatttgaatgaat 42603450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #41
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 49
Target Start/End: Complemental strand, 17509240 - 17509198
Alignment:
Q  7 tttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    |||||||||||||||| |||||||||| | |||||||||||||    
T  17509240 tttgtttttgtgattttgtcgtctctgaatgactctgtttgtt 17509198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #42
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 49
Target Start/End: Original strand, 17543974 - 17544016
Alignment:
Q  7 tttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    |||||||||||||||| |||||||||| | |||||||||||||    
T  17543974 tttgtttttgtgattttgtcgtctctgaatgactctgtttgtt 17544016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #43
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 49
Target Start/End: Complemental strand, 48304425 - 48304387
Alignment:
Q  11 tttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    |||||||||||||||||||| || |||||||||||||||    
T  48304425 tttttgtgatttcgtcgtctttgaacgactctgtttgtt 48304387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #44
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 50
Target Start/End: Original strand, 38276928 - 38276973
Alignment:
Q  5 cgtttgtttttgtgatttcgtcgtctctgcacgactctgtttgttg 50  Q
    |||||||||||||||||| ||| ||||||||| ||| |||||||||    
T  38276928 cgtttgtttttgtgattttgtcatctctgcacaactttgtttgttg 38276973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #45
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 49
Target Start/End: Original strand, 2622675 - 2622719
Alignment:
Q  5 cgtttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    |||||||||||||||||||||||||| || | | |||||||||||    
T  2622675 cgtttgtttttgtgatttcgtcgtctttgaatggctctgtttgtt 2622719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #46
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 49
Target Start/End: Complemental strand, 33476690 - 33476646
Alignment:
Q  5 cgtttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    ||||||||||| |||||||||||||| ||||||||| | ||||||    
T  33476690 cgtttgtttttatgatttcgtcgtctttgcacgactttttttgtt 33476646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #47
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 37376073 - 37376025
Alignment:
Q  1 ctttcgtttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    ||||||||||||| |||||||| |||||||| | | |||||||||||||    
T  37376073 ctttcgtttgtttatgtgattttgtcgtctcagaatgactctgtttgtt 37376025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #48
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 30
Target Start/End: Original strand, 37714558 - 37714586
Alignment:
Q  2 tttcgtttgtttttgtgatttcgtcgtct 30  Q
    |||||||||||||||||||||||||||||    
T  37714558 tttcgtttgtttttgtgatttcgtcgtct 37714586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #49
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 39533017 - 39532973
Alignment:
Q  1 ctttcgtttgtttttgtgatttcgtcgtctctgcacgactctgtt 45  Q
    |||| ||||||||| ||||||||||||||| || |||||||||||    
T  39533017 cttttgtttgttttcgtgatttcgtcgtctttgaacgactctgtt 39532973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #50
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 31
Target Start/End: Original strand, 39707371 - 39707399
Alignment:
Q  3 ttcgtttgtttttgtgatttcgtcgtctc 31  Q
    |||||||||||||||||||||||||||||    
T  39707371 ttcgtttgtttttgtgatttcgtcgtctc 39707399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 9e-17; HSPs: 25)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 19402850 - 19402802
Alignment:
Q  1 ctttcgtttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||    
T  19402850 ctttcgtttgtttttgtgatttcgtcgtctctgaacgactctgtttgtt 19402802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 2 - 49
Target Start/End: Original strand, 23654330 - 23654377
Alignment:
Q  2 tttcgtttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||    
T  23654330 tttcgtttgtttttgtgatttcgtcgtctctgaacgactctgtttgtt 23654377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 15590121 - 15590073
Alignment:
Q  1 ctttcgtttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    |||||||||| |||||||||||||||||||||| |||||||||||||||    
T  15590121 ctttcgtttgcttttgtgatttcgtcgtctctgaacgactctgtttgtt 15590073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 2 - 49
Target Start/End: Complemental strand, 4921922 - 4921875
Alignment:
Q  2 tttcgtttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    ||||||||||||||||||||| ||||||||||||||||||| ||||||    
T  4921922 tttcgtttgtttttgtgattttgtcgtctctgcacgactctatttgtt 4921875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 2 - 49
Target Start/End: Complemental strand, 31937461 - 31937414
Alignment:
Q  2 tttcgtttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    |||||||||||||||||||||||||||||||  |||||||||||||||    
T  31937461 tttcgtttgtttttgtgatttcgtcgtctctaaacgactctgtttgtt 31937414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 2304852 - 2304804
Alignment:
Q  1 ctttcgtttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    ||||||||||||||||||||||||||||||||| | |||||| ||||||    
T  2304852 ctttcgtttgtttttgtgatttcgtcgtctctgaatgactctatttgtt 2304804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 4393849 - 4393897
Alignment:
Q  1 ctttcgtttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    ||||||||||||||||||||||| | |||||||||||| ||||||||||    
T  4393849 ctttcgtttgtttttgtgatttcatggtctctgcacgattctgtttgtt 4393897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 6296291 - 6296243
Alignment:
Q  1 ctttcgtttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    ||||||||||||||||||||||||||||||||| |||||| || |||||    
T  6296291 ctttcgtttgtttttgtgatttcgtcgtctctgaacgactttgcttgtt 6296243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 6303101 - 6303053
Alignment:
Q  1 ctttcgtttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    ||||||||||||||||||||||||||||||||| |||||| || |||||    
T  6303101 ctttcgtttgtttttgtgatttcgtcgtctctgaacgactttgcttgtt 6303053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 12481412 - 12481364
Alignment:
Q  1 ctttcgtttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    ||||||||||||||||||||||||||||||||  |||||| ||||||||    
T  12481412 ctttcgtttgtttttgtgatttcgtcgtctctaaacgactttgtttgtt 12481364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 5 - 49
Target Start/End: Original strand, 31705248 - 31705292
Alignment:
Q  5 cgtttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    |||||| |||||||||||||||||||||| |||||||||||||||    
T  31705248 cgtttgcttttgtgatttcgtcgtctctgaacgactctgtttgtt 31705292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 49
Target Start/End: Original strand, 27135193 - 27135240
Alignment:
Q  2 tttcgtttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    |||| |||||||||||||||||||||||||| ||||||||| ||||||    
T  27135193 tttcctttgtttttgtgatttcgtcgtctctacacgactctatttgtt 27135240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 7 - 49
Target Start/End: Original strand, 29284837 - 29284879
Alignment:
Q  7 tttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    |||||||||||||||||||||||| ||||||||| ||||||||    
T  29284837 tttgtttttgtgatttcgtcgtctttgcacgactttgtttgtt 29284879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 14783213 - 14783165
Alignment:
Q  1 ctttcgtttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    ||||| ||| ||||||||||||||||||||||| || ||||||||||||    
T  14783213 ctttcatttctttttgtgatttcgtcgtctctgaacaactctgtttgtt 14783165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 21507850 - 21507802
Alignment:
Q  1 ctttcgtttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    |||||||||||||||||||||| |||||||||  |||||| ||||||||    
T  21507850 ctttcgtttgtttttgtgattttgtcgtctctaaacgactttgtttgtt 21507802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 29927136 - 29927092
Alignment:
Q  1 ctttcgtttgtttttgtgatttcgtcgtctctgcacgactctgtt 45  Q
    |||||||||||||||||||||| |||||||||  |||||||||||    
T  29927136 ctttcgtttgtttttgtgattttgtcgtctctaaacgactctgtt 29927092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 86 - 125
Target Start/End: Complemental strand, 5527358 - 5527319
Alignment:
Q  86 atttatattgtatcgatgcactctatcaattcgaatgaat 125  Q
    ||||||||||||| |||| |||||||||||||||||||||    
T  5527358 atttatattgtattgatgtactctatcaattcgaatgaat 5527319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 86 - 125
Target Start/End: Complemental strand, 15589835 - 15589796
Alignment:
Q  86 atttatattgtatcgatgcactctatcaattcgaatgaat 125  Q
    |||||||||||||||||| |||||||||||| ||||||||    
T  15589835 atttatattgtatcgatgtactctatcaatttgaatgaat 15589796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 6419900 - 6419862
Alignment:
Q  1 ctttcgtttgtttttgtgatttcgtcgtctctgcacgac 39  Q
    ||||| ||||||||||||||||||||||||||| |||||    
T  6419900 ctttcatttgtttttgtgatttcgtcgtctctgaacgac 6419862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 35
Target Start/End: Complemental strand, 20028739 - 20028706
Alignment:
Q  2 tttcgtttgtttttgtgatttcgtcgtctctgca 35  Q
    ||||||||||||||||||||||||||||| ||||    
T  20028739 tttcgtttgtttttgtgatttcgtcgtctttgca 20028706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 2488218 - 2488265
Alignment:
Q  1 ctttcgtttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    |||||||||||||| || ||||||| |||||||||||||| ||||||||    
T  2488218 ctttcgtttgtttt-gtaatttcgttgtctctgcacgactatgtttgtt 2488265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 126
Target Start/End: Original strand, 2488533 - 2488573
Alignment:
Q  86 atttatattgtatcgatgcactctatcaattcgaatgaata 126  Q
    |||| ||||||||||||| |||||||||||| |||||||||    
T  2488533 atttgtattgtatcgatgtactctatcaatttgaatgaata 2488573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 126
Target Start/End: Complemental strand, 8693381 - 8693341
Alignment:
Q  86 atttatattgtatcgatgcactctatcaattcgaatgaata 126  Q
    |||| ||||||||||||| |||||||||||| |||||||||    
T  8693381 atttgtattgtatcgatgtactctatcaatttgaatgaata 8693341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 8693699 - 8693651
Alignment:
Q  1 ctttcgtttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    ||||||||||||||||| |||| |||||||||| ||||||  |||||||    
T  8693699 ctttcgtttgtttttgtcattttgtcgtctctgaacgacttcgtttgtt 8693651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 23638160 - 23638112
Alignment:
Q  1 ctttcgtttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    ||||||||||| ||||| ||||||||||||||| |  ||||||||||||    
T  23638160 ctttcgtttgtgtttgtaatttcgtcgtctctgaagaactctgtttgtt 23638112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 9e-17; HSPs: 42)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 2147806 - 2147854
Alignment:
Q  1 ctttcgtttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||    
T  2147806 ctttcatttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 2147854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 35174783 - 35174831
Alignment:
Q  1 ctttcgtttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||    
T  35174783 ctttcgtttgtttttgtgatttcgtcgtctctgaacgactctgtttgtt 35174831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 39429549 - 39429501
Alignment:
Q  1 ctttcgtttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||    
T  39429549 ctttcgtttgtttttttgatttcgtcgtctctgcacgactctgtttgtt 39429501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 106085 - 106040
Alignment:
Q  1 ctttcgtttgtttttgtgatttcgtcgtctctgcacgactctgttt 46  Q
    |||||||||||||||||||||| |||||||||||||||||||||||    
T  106085 ctttcgtttgtttttgtgattttgtcgtctctgcacgactctgttt 106040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 11819162 - 11819210
Alignment:
Q  1 ctttcgtttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    ||||| ||||||||||||||||||||||||||| |||||||||||||||    
T  11819162 ctttcatttgtttttgtgatttcgtcgtctctgaacgactctgtttgtt 11819210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 31270405 - 31270453
Alignment:
Q  1 ctttcgtttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    ||||||||||||||||| ||||||||||||||| |||||||||||||||    
T  31270405 ctttcgtttgtttttgtaatttcgtcgtctctgaacgactctgtttgtt 31270453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 31462796 - 31462748
Alignment:
Q  1 ctttcgtttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    |||| |||||||||||||||||||||||||||| |||||||||||||||    
T  31462796 cttttgtttgtttttgtgatttcgtcgtctctgaacgactctgtttgtt 31462748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 32080804 - 32080756
Alignment:
Q  1 ctttcgtttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    |||||||||||||||||||||| |||||||||| |||||||||||||||    
T  32080804 ctttcgtttgtttttgtgattttgtcgtctctgaacgactctgtttgtt 32080756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 36691849 - 36691801
Alignment:
Q  1 ctttcgtttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    ||||||||||||||||||||||||||||||||| |||||| ||||||||    
T  36691849 ctttcgtttgtttttgtgatttcgtcgtctctgaacgactatgtttgtt 36691801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 2 - 49
Target Start/End: Complemental strand, 19861328 - 19861281
Alignment:
Q  2 tttcgtttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    |||||||||||||||||||||||||||||||  |||||||||||||||    
T  19861328 tttcgtttgtttttgtgatttcgtcgtctcttaacgactctgtttgtt 19861281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 14585541 - 14585589
Alignment:
Q  1 ctttcgtttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    |||| |||||||||||||||||| ||||||||| |||||||||||||||    
T  14585541 cttttgtttgtttttgtgatttcctcgtctctgaacgactctgtttgtt 14585589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 22485044 - 22485092
Alignment:
Q  1 ctttcgtttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    |||||||||||||||||||||||||| ||| || |||||||||||||||    
T  22485044 ctttcgtttgtttttgtgatttcgtcatctttgaacgactctgtttgtt 22485092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 36624744 - 36624700
Alignment:
Q  1 ctttcgtttgtttttgtgatttcgtcgtctctgcacgactctgtt 45  Q
    |||| |||||||||||||||||||||||||||| |||||||||||    
T  36624744 cttttgtttgtttttgtgatttcgtcgtctctgaacgactctgtt 36624700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 38527342 - 38527390
Alignment:
Q  1 ctttcgtttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    ||||||||||||||| ||||||||||||||||| | |||||||||||||    
T  38527342 ctttcgtttgtttttatgatttcgtcgtctctgaatgactctgtttgtt 38527390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 40013322 - 40013274
Alignment:
Q  1 ctttcgtttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    ||||||||||||||||||||||||||||||||| || |||| |||||||    
T  40013322 ctttcgtttgtttttgtgatttcgtcgtctctgaacaactccgtttgtt 40013274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 48652490 - 48652442
Alignment:
Q  1 ctttcgtttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    ||||||||||||||||||||||||||||||||  |||||| ||||||||    
T  48652490 ctttcgtttgtttttgtgatttcgtcgtctctaaacgactttgtttgtt 48652442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 53402700 - 53402748
Alignment:
Q  1 ctttcgtttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    ||||||||||||||||||||||| ||||||||| |||||| ||||||||    
T  53402700 ctttcgtttgtttttgtgatttcatcgtctctgaacgactttgtttgtt 53402748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 55454945 - 55454993
Alignment:
Q  1 ctttcgtttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    |||||||||||||||||||| |||||||||||  |||||||||||||||    
T  55454945 ctttcgtttgtttttgtgatatcgtcgtctctaaacgactctgtttgtt 55454993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 49
Target Start/End: Original strand, 19645301 - 19645348
Alignment:
Q  2 tttcgtttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    |||| ||||||||||||||| ||||||||||| |||||||||||||||    
T  19645301 tttcctttgtttttgtgattacgtcgtctctgaacgactctgtttgtt 19645348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 7 - 49
Target Start/End: Complemental strand, 24483722 - 24483680
Alignment:
Q  7 tttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    |||||||||||||||| |||||||||| |||||||||||||||    
T  24483722 tttgtttttgtgattttgtcgtctctgaacgactctgtttgtt 24483680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 40883918 - 40883877
Alignment:
Q  1 ctttcgtttgtttttgtgatttcgtcgtctctgcacgactct 42  Q
    |||||||||||||||||||||||||||| |||| ||||||||    
T  40883918 ctttcgtttgtttttgtgatttcgtcgtttctgaacgactct 40883877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 33637482 - 33637530
Alignment:
Q  1 ctttcgtttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    ||||||||| ||||||||||||||||||||||  |||||| ||||||||    
T  33637482 ctttcgtttatttttgtgatttcgtcgtctctaaacgactttgtttgtt 33637530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 34103767 - 34103719
Alignment:
Q  1 ctttcgtttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    |||||||||||||||||||||||||||||  || | |||||||||||||    
T  34103767 ctttcgtttgtttttgtgatttcgtcgtccttgaatgactctgtttgtt 34103719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 39610291 - 39610339
Alignment:
Q  1 ctttcgtttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    |||||||||||||||||||||| ||||||| || | |||||||||||||    
T  39610291 ctttcgtttgtttttgtgattttgtcgtctttgaatgactctgtttgtt 39610339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 41868344 - 41868296
Alignment:
Q  1 ctttcgtttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    |||||||||| |||||||||||||||||||||  |||||||| ||||||    
T  41868344 ctttcgtttgcttttgtgatttcgtcgtctctaaacgactctatttgtt 41868296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 53155480 - 53155432
Alignment:
Q  1 ctttcgtttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    ||||||||||||||||| |||||||||| | || |||||||||||||||    
T  53155480 ctttcgtttgtttttgtaatttcgtcgtatttgaacgactctgtttgtt 53155432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 54239068 - 54239020
Alignment:
Q  1 ctttcgtttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    |||||||||||||||||||||||||||||  || |||||| ||||||||    
T  54239068 ctttcgtttgtttttgtgatttcgtcgtcgatgaacgactttgtttgtt 54239020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 55090633 - 55090585
Alignment:
Q  1 ctttcgtttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    ||||| ||||||||||||||| ||||||||||| |||||| ||||||||    
T  55090633 ctttcatttgtttttgtgattccgtcgtctctgaacgactttgtttgtt 55090585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 4206561 - 4206522
Alignment:
Q  1 ctttcgtttgtttttgtgatttcgtcgtctctgcacgact 40  Q
    |||| |||||||||||||||||||||||||||| ||||||    
T  4206561 cttttgtttgtttttgtgatttcgtcgtctctgaacgact 4206522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 48400978 - 48401009
Alignment:
Q  1 ctttcgtttgtttttgtgatttcgtcgtctct 32  Q
    ||||||||||||||||||||||||||||||||    
T  48400978 ctttcgtttgtttttgtgatttcgtcgtctct 48401009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 86 - 125
Target Start/End: Original strand, 48401503 - 48401542
Alignment:
Q  86 atttatattgtatcgatgcactctatcaattcgaatgaat 125  Q
    |||||||||||||||||| |||||||||||| ||||||||    
T  48401503 atttatattgtatcgatgtactctatcaatttgaatgaat 48401542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 86 - 125
Target Start/End: Complemental strand, 49627822 - 49627783
Alignment:
Q  86 atttatattgtatcgatgcactctatcaattcgaatgaat 125  Q
    |||||||||||||||||| |||||||||||| ||||||||    
T  49627822 atttatattgtatcgatgtactctatcaatttgaatgaat 49627783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 49628137 - 49628106
Alignment:
Q  1 ctttcgtttgtttttgtgatttcgtcgtctct 32  Q
    ||||||||||||||||||||||||||||||||    
T  49628137 ctttcgtttgtttttgtgatttcgtcgtctct 49628106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 1074944 - 1074899
Alignment:
Q  1 ctttcgtttgtttttgtgatttcgtcgtctctgcacgactctgttt 46  Q
    |||||||||||||| ||||||| |||||||||  ||||||||||||    
T  1074944 ctttcgtttgttttcgtgattttgtcgtctcttaacgactctgttt 1074899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 3312522 - 3312567
Alignment:
Q  1 ctttcgtttgtttttgtgatttcgtcgtctctgcacgactctgttt 46  Q
    ||||||||||||||||| ||||| || |||||||||||||| ||||    
T  3312522 ctttcgtttgtttttgttatttcatcatctctgcacgactcagttt 3312567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 3457022 - 3457063
Alignment:
Q  1 ctttcgtttgtttttgtgatttcgtcgtctctgcacgactct 42  Q
    ||||| ||||||||||||||||||||||||||  ||||||||    
T  3457022 ctttcctttgtttttgtgatttcgtcgtctctaaacgactct 3457063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 92 - 125
Target Start/End: Original strand, 4019994 - 4020027
Alignment:
Q  92 attgtatcgatgcactctatcaattcgaatgaat 125  Q
    ||||||||||||||||||||||||| ||||||||    
T  4019994 attgtatcgatgcactctatcaatttgaatgaat 4020027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 92 - 125
Target Start/End: Original strand, 22844448 - 22844481
Alignment:
Q  92 attgtatcgatgcactctatcaattcgaatgaat 125  Q
    |||||||||||| |||||||||||||||||||||    
T  22844448 attgtatcgatgtactctatcaattcgaatgaat 22844481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 24520716 - 24520757
Alignment:
Q  1 ctttcgtttgtttttgtgatttcgtcgtctctgcacgactct 42  Q
    ||||||||| |||||||||||||||||||| || ||||||||    
T  24520716 ctttcgtttatttttgtgatttcgtcgtctttggacgactct 24520757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 13702022 - 13701974
Alignment:
Q  1 ctttcgtttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    ||||| |||||||||||||||||||||||  || || ||||||||||||    
T  13702022 ctttcatttgtttttgtgatttcgtcgtcattgaacaactctgtttgtt 13701974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 42
Target Start/End: Original strand, 40716270 - 40716310
Alignment:
Q  2 tttcgtttgtttttgtgatttcgtcgtctctgcacgactct 42  Q
    |||| |||||||||| ||||||||||||| |||||||||||    
T  40716270 tttcctttgtttttgcgatttcgtcgtctttgcacgactct 40716310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 42
Target Start/End: Complemental strand, 50637988 - 50637948
Alignment:
Q  2 tttcgtttgtttttgtgatttcgtcgtctctgcacgactct 42  Q
    |||| ||||||||||| |||||||||||| |||||||||||    
T  50637988 tttcatttgtttttgtaatttcgtcgtctttgcacgactct 50637948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 9e-17; HSPs: 33)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 12871700 - 12871748
Alignment:
Q  1 ctttcgtttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||    
T  12871700 ctttcgtttgtttttgtgatttcgtcgtctttgcacgactctgtttgtt 12871748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 42490972 - 42491020
Alignment:
Q  1 ctttcgtttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||    
T  42490972 ctttcgtttgtttttgtgatttcgtcgtctctgtacgactctgtttgtt 42491020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 44517226 - 44517274
Alignment:
Q  1 ctttcgtttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||    
T  44517226 ctttcgtttgtttttgtgatttcgtcgtctctgaacgactctgtttgtt 44517274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 424333 - 424285
Alignment:
Q  1 ctttcgtttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    ||||||||||||||||||||||||||||||||| |||||| ||||||||    
T  424333 ctttcgtttgtttttgtgatttcgtcgtctctgaacgactatgtttgtt 424285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 3232867 - 3232915
Alignment:
Q  1 ctttcgtttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    |||||||||||||||||||||||||||| |||| |||||||||||||||    
T  3232867 ctttcgtttgtttttgtgatttcgtcgtttctgaacgactctgtttgtt 3232915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 10627079 - 10627127
Alignment:
Q  1 ctttcgtttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    ||||||||||||||||||||||||||||||||| | |||||||||||||    
T  10627079 ctttcgtttgtttttgtgatttcgtcgtctctgaatgactctgtttgtt 10627127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 13488578 - 13488530
Alignment:
Q  1 ctttcgtttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    |||||||||||||||||||||||| |||||||| |||||||||||||||    
T  13488578 ctttcgtttgtttttgtgatttcgccgtctctgaacgactctgtttgtt 13488530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 15791317 - 15791269
Alignment:
Q  1 ctttcgtttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    ||||||||||||||||||||||| ||||||||| |||||||||||||||    
T  15791317 ctttcgtttgtttttgtgatttcatcgtctctgaacgactctgtttgtt 15791269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 29205364 - 29205412
Alignment:
Q  1 ctttcgtttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    |||| |||||||||||||||||||||||||||| |||||||||||||||    
T  29205364 cttttgtttgtttttgtgatttcgtcgtctctgaacgactctgtttgtt 29205412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 29726638 - 29726590
Alignment:
Q  1 ctttcgtttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    ||||||||||||||||||||||||||||||| ||||||||| |||||||    
T  29726638 ctttcgtttgtttttgtgatttcgtcgtctccgcacgactcggtttgtt 29726590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 33487072 - 33487024
Alignment:
Q  1 ctttcgtttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    |||||||||||||||||||||||||||||| || |||||||||||||||    
T  33487072 ctttcgtttgtttttgtgatttcgtcgtctttgaacgactctgtttgtt 33487024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 33939055 - 33939007
Alignment:
Q  1 ctttcgtttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    |||||||||||||||||||||||||| |||||| |||||||||||||||    
T  33939055 ctttcgtttgtttttgtgatttcgtcatctctgaacgactctgtttgtt 33939007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 2 - 42
Target Start/End: Original strand, 47551177 - 47551217
Alignment:
Q  2 tttcgtttgtttttgtgatttcgtcgtctctgcacgactct 42  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  47551177 tttcgtttgtttttgtgatttcgtcgtctctgcacgactct 47551217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 51418092 - 51418140
Alignment:
Q  1 ctttcgtttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    ||||||||||||||||| ||||||||||||||| |||||||||||||||    
T  51418092 ctttcgtttgtttttgtaatttcgtcgtctctgaacgactctgtttgtt 51418140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 7 - 49
Target Start/End: Original strand, 17347682 - 17347724
Alignment:
Q  7 tttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    |||||||||||||||||||||||||||||||||||| ||||||    
T  17347682 tttgtttttgtgatttcgtcgtctctgcacgactctctttgtt 17347724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 9 - 49
Target Start/End: Original strand, 14265371 - 14265411
Alignment:
Q  9 tgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    ||||||||||||||||||||||||| |||||||||||||||    
T  14265371 tgtttttgtgatttcgtcgtctctgaacgactctgtttgtt 14265411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 15391294 - 15391246
Alignment:
Q  1 ctttcgtttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    ||||||||||||||||||||||||||||||||| ||||||  |||||||    
T  15391294 ctttcgtttgtttttgtgatttcgtcgtctctggacgacttcgtttgtt 15391246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 28678172 - 28678124
Alignment:
Q  1 ctttcgtttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    |||||||||||||||||||||||||||| | || |||||||||||||||    
T  28678172 ctttcgtttgtttttgtgatttcgtcgtatttgaacgactctgtttgtt 28678124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 37822387 - 37822339
Alignment:
Q  1 ctttcgtttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    ||||| ||||||||||||||||||||||||||| |||||| ||||||||    
T  37822387 ctttcatttgtttttgtgatttcgtcgtctctgaacgactttgtttgtt 37822339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 45750557 - 45750605
Alignment:
Q  1 ctttcgtttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    |||||||||||||||||||||||||||||| || |||||| ||||||||    
T  45750557 ctttcgtttgtttttgtgatttcgtcgtctttgaacgactttgtttgtt 45750605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 27534778 - 27534817
Alignment:
Q  1 ctttcgtttgtttttgtgatttcgtcgtctctgcacgact 40  Q
    ||||||||||||||||||||||||||||||||| ||||||    
T  27534778 ctttcgtttgtttttgtgatttcgtcgtctctgaacgact 27534817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 49
Target Start/End: Complemental strand, 29069883 - 29069836
Alignment:
Q  2 tttcgtttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    |||||||||||||| |||||||||||||| | ||||||||||||||||    
T  29069883 tttcgtttgtttttatgatttcgtcgtctttacacgactctgtttgtt 29069836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 7 - 49
Target Start/End: Complemental strand, 33125841 - 33125799
Alignment:
Q  7 tttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    ||||||||||||||||||| |||||||||| ||||||||||||    
T  33125841 tttgtttttgtgatttcgttgtctctgcacaactctgtttgtt 33125799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 32784187 - 32784232
Alignment:
Q  1 ctttcgtttgtttttgtgatttcgtcgtctctgcacgactctgttt 46  Q
    |||| |||||||||||||||||||||||||||| |||||| |||||    
T  32784187 cttttgtttgtttttgtgatttcgtcgtctctgaacgactatgttt 32784232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 45425514 - 45425469
Alignment:
Q  1 ctttcgtttgtttttgtgatttcgtcgtctctgcacgactctgttt 46  Q
    |||||||| |||||||||||||||||||||  ||||||||||||||    
T  45425514 ctttcgttagtttttgtgatttcgtcgtcttagcacgactctgttt 45425469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 4882401 - 4882353
Alignment:
Q  1 ctttcgtttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    ||||||||||||||||||||||||||||||||  ||||||  |||||||    
T  4882401 ctttcgtttgtttttgtgatttcgtcgtctcttaacgacttcgtttgtt 4882353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 18343693 - 18343740
Alignment:
Q  1 ctttcgtttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    ||||||||||||||||||||||||| |||| || |||||||||||||||    
T  18343693 ctttcgtttgtttttgtgatttcgt-gtctttgaacgactctgtttgtt 18343740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 20411652 - 20411700
Alignment:
Q  1 ctttcgtttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    |||||||||||||||| |||||| ||||||||  |||||||||||||||    
T  20411652 ctttcgtttgtttttgggatttcatcgtctctaaacgactctgtttgtt 20411700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 25689885 - 25689837
Alignment:
Q  1 ctttcgtttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    |||||||||||||||||||| | ||||||| |||| |||||||||||||    
T  25689885 ctttcgtttgtttttgtgatgttgtcgtctttgcatgactctgtttgtt 25689837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 86 - 125
Target Start/End: Original strand, 42491280 - 42491319
Alignment:
Q  86 atttatattgtatcgatgcactctatcaattcgaatgaat 125  Q
    |||||||||||||||||| |||||||||||| ||||||||    
T  42491280 atttatattgtatcgatgtactctatcaatttgaatgaat 42491319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 140
Target Start/End: Original strand, 27535108 - 27535161
Alignment:
Q  86 atttatattgtatcgatgcactctatcaattcgaatgaatattgttatatttttg 140  Q
    |||| ||||||||||||| |||||||||||| |||||||||| ||| ||||||||    
T  27535108 atttgtattgtatcgatgtactctatcaatttgaatgaatatcgtt-tatttttg 27535161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 50107956 - 50107926
Alignment:
Q  1 ctttcgtttgtttttgtgatttcgtcgtctc 31  Q
    |||||||||||||||||||||||||||||||    
T  50107956 ctttcgtttgtttttgtgatttcgtcgtctc 50107926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 49
Target Start/End: Original strand, 42276446 - 42276482
Alignment:
Q  13 tttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    ||||||||| ||||||||||| |||||||||||||||    
T  42276446 tttgtgattacgtcgtctctgaacgactctgtttgtt 42276482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0312 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0312
Description:

Target: scaffold0312; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 6216 - 6264
Alignment:
Q  1 ctttcgtttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    ||||||||||||||||||||||||||||||||| |||||| ||||||||    
T  6216 ctttcgtttgtttttgtgatttcgtcgtctctgaacgactatgtttgtt 6264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0121 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 13287 - 13239
Alignment:
Q  1 ctttcgtttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    |||| |||||||||||||||||||||||||||| |||||||||||||||    
T  13287 cttttgtttgtttttgtgatttcgtcgtctctgaacgactctgtttgtt 13239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1350 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold1350
Description:

Target: scaffold1350; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 1653 - 1701
Alignment:
Q  1 ctttcgtttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    ||||||||||||||||||||||||||||||||| | |||| ||||||||    
T  1653 ctttcgtttgtttttgtgatttcgtcgtctctgaaagactttgtttgtt 1701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0294 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 4109 - 4061
Alignment:
Q  1 ctttcgtttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    |||||||||||||||||||||||||||||| || |||||| ||||||||    
T  4109 ctttcgtttgtttttgtgatttcgtcgtctttgaacgactttgtttgtt 4061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0536 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: scaffold0536
Description:

Target: scaffold0536; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 2981 - 3029
Alignment:
Q  1 ctttcgtttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    |||||||||||||||||||||| ||||||| || | |||||||||||||    
T  2981 ctttcgtttgtttttgtgattttgtcgtctatgaatgactctgtttgtt 3029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0536; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 86 - 125
Target Start/End: Original strand, 3306 - 3345
Alignment:
Q  86 atttatattgtatcgatgcactctatcaattcgaatgaat 125  Q
    |||||||||||||||||| |||||||||||| ||||||||    
T  3306 atttatattgtatcgatgtactctatcaatttgaatgaat 3345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0321 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0321
Description:

Target: scaffold0321; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 7166 - 7118
Alignment:
Q  1 ctttcgtttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    |||||||||||||||||||||||||||||| |  ||||||| |||||||    
T  7166 ctttcgtttgtttttgtgatttcgtcgtctataaacgactcggtttgtt 7118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 49
Target Start/End: Complemental strand, 404296 - 404252
Alignment:
Q  5 cgtttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    ||||||||||||||||||||||||||||   ||||||||||||||    
T  404296 cgtttgtttttgtgatttcgtcgtctctaatcgactctgtttgtt 404252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0056 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0056
Description:

Target: scaffold0056; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 74243 - 74291
Alignment:
Q  1 ctttcgtttgtttttgtgatttcgtcgtctctgcacgactctgtttgtt 49  Q
    ||||||||||||||||||||||  |||||| || |||||| ||||||||    
T  74243 ctttcgtttgtttttgtgattttttcgtctttgaacgactttgtttgtt 74291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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