View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2588_high_7 (Length: 227)
Name: NF2588_high_7
Description: NF2588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2588_high_7 |
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Alignment Details
Target: chr1 (Bit Score: 184; Significance: 1e-99; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 8 - 223
Target Start/End: Complemental strand, 26074596 - 26074381
Alignment:
| Q |
8 |
ttgactcctctggcagagctggatttgctagctagagatcagttggagaggggtcatctttcgaaccattcttaagcctttcgtaatcatcatgagtcgg |
107 |
Q |
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| T |
26074596 |
ttgactcctctggcagagctggatttgctagctagagatcagttggagaggggtcatttttcgaaccattcttaagcctttcgtaatcatcacgagtcgg |
26074497 |
T |
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| Q |
108 |
tcttcattgttggccacagcccttcaaaatgggaaagcacagtgtccagtggatcttgtaatgacagatgttgtcatgaaccaggaattgaaatccttag |
207 |
Q |
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| T |
26074496 |
tcttcattgttggccacagcccttcaaaatgggaaagcatagagtccagtggatcttgtaataacagatgttgtcatgaaccaggatatgaaatccttag |
26074397 |
T |
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| Q |
208 |
acagagactaccttcc |
223 |
Q |
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||||| |||||||||| |
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| T |
26074396 |
acagaaactaccttcc |
26074381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 134 - 227
Target Start/End: Complemental strand, 26105543 - 26105450
Alignment:
| Q |
134 |
aaatgggaaagcacagtgtccagtggatcttgtaatgacagatgttgtcatgaaccaggaattgaaatccttagacagagactaccttcccaca |
227 |
Q |
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| T |
26105543 |
aaatgggaaagcacaaagtccagtggatcttgtaatgacagatattgtcatgaaccaggaattgaaatccttagacagaaactaccttcccaca |
26105450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 134 - 223
Target Start/End: Complemental strand, 26094111 - 26094022
Alignment:
| Q |
134 |
aaatgggaaagcacagtgtccagtggatcttgtaatgacagatgttgtcatgaaccaggaattgaaatccttagacagagactaccttcc |
223 |
Q |
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| T |
26094111 |
aaatgggaaagcacagagtccagtggatcttgcaatgacaaatattgttgtgaacaatgtattgaaatccttagacagaaactaccttcc |
26094022 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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